Rmu_sc0009295.1_g000012

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009295.1
OG0000631
Physical Location & Seq
Reverse (-)
50264 .. 51468
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009295.1_g000012.1.cds

Sequence Viewer

Length: 663 bp
atggcacacttttcgttccaaagaggcgaccaggtcgaagtttgcaacaaacttgaaggctttctgggctcgtactacgaggccaccgtcgtcgcaaacatgggcaccaactatgtgatccagatcgatgcttacgatcttgatgggtggtgggtcggtacgatttcgtcggaggaaaatggttctgggcatcagtctgtgtttttcgagactactgggcaagagcttgattacccagttttgaagctgagggttttcgagacaacaagcttctccacagtctgtgttcatcaagattggcgcaatggaaaccgaaatcgggtctcaaacagaaggcaaaatgcaaatcccaactctgttgcaggtgtaacaagtgcaattgaggtcaactttgaaactcaccgtccactgattgggattggggttttcaaggccgtcggggctcagattgggattagggcggtaactgtcatcggggcgaagctcgagttcgaggccgaaattggaatccattttggggtgggtggttggtggctagtggctgttgatatcgtcagtgcacaagctgaacgaccacttgtcctacccaccacggtccaaattgctcaaggtttgctgctagcctttaatcagagcaaacctcaacagccagtggaaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

220

Amino Acids

24.19

Weight (kDa)

5.2

Isoelectric Point (pI)

26.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 353
AccB1I GGYRCC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 413
AciI CCGC 1 cut(s) 461
AclWI GGATC 1 cut(s) 112
AfaI GTAC 2 cut(s) 74, 160
AfiI CCNNNNNNNGG 3 cut(s) 319, 413, 517
AgsI TTSAA 4 cut(s) 56, 244, 395, 430
AhdI GACNNNNNGTC 1 cut(s) 578
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 5 cut(s) 226, 247, 270, 484, 566
AluI AGCT 5 cut(s) 226, 247, 270, 484, 566
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 3 cut(s) 203, 254, 328
Alw44I GTGCAC 1 cut(s) 558
AlwI GGATC 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 485
AoxI GGCC 3 cut(s) 81, 432, 495
ApaLI GTGCAC 1 cut(s) 558
ApeKI GCWGC 1 cut(s) 616
Asp700I GAANNNNTTC 1 cut(s) 60
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 595
AsuHPI GGTGA 1 cut(s) 392
AsuNHI GCTAGC 1 cut(s) 619
AvaI CYCGRG 1 cut(s) 485
AvaII GGWCC 1 cut(s) 595
BaeGI GKGCMC 2 cut(s) 107, 562
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 2 cut(s) 71, 445
Bbv12I GWGCWC 1 cut(s) 562
BbvCI CCTCAGC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 603
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 419
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 3 cut(s) 203, 254, 328
BfaI CTAG 2 cut(s) 536, 620
BfuAI ACCTGC 1 cut(s) 353
BglI GCCNNNNNGGC 1 cut(s) 440
BisI GCNGC 1 cut(s) 617
BlsI GCNGC 1 cut(s) 618
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 595
BmeRI GACNNNNNGTC 1 cut(s) 578
BmeT110I CYCGRG 1 cut(s) 485
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 32
BmrI ACTGGG 2 cut(s) 225, 230
BmsI GCATC 2 cut(s) 118, 199
BmtI GCTAGC 1 cut(s) 623
BmuI ACTGGG 2 cut(s) 225, 230
BplI GAGNNNNNCTC 2 cut(s) 625, 657
Bpu10I CCTNAGC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 591
Bsa29I ATCGAT 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 591
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 413, 517
Bse1I ACTGG 3 cut(s) 220, 236, 650
Bse3DI GCAATG 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 32
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 591
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 3 cut(s) 319, 413, 517
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 239, 458
BseNI ACTGG 3 cut(s) 220, 236, 650
BseSI GKGCMC 2 cut(s) 107, 562
BseXI GCAGC 1 cut(s) 603
BshFI GGCC 3 cut(s) 83, 434, 497
BshNI GGYRCC 1 cut(s) 104
BshVI ATCGAT 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 562
BsiHKCI CYCGRG 1 cut(s) 485
BslI CCNNNNNNNGG 3 cut(s) 319, 413, 517
BsmAI GTCTC 3 cut(s) 203, 254, 328
BsnI GGCC 3 cut(s) 83, 434, 497
Bso31I GGTCTC 1 cut(s) 328
BsoBI CYCGRG 1 cut(s) 485
Bsp1286I GDGCHC 4 cut(s) 71, 107, 445, 562
Bsp143I GATC 3 cut(s) 117, 123, 136
BspACI CCGC 1 cut(s) 461
BspANI GGCC 3 cut(s) 83, 434, 497
BspCNI CTCAG 2 cut(s) 240, 457
BspDI ATCGAT 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 353
BspOI GCTAGC 1 cut(s) 623
BspPI GGATC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 3 cut(s) 220, 236, 650
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 3 cut(s) 117, 123, 136
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 5 cut(s) 88, 280, 404, 469, 595
BstC8I GCNNGC 1 cut(s) 621
BstDEI CTNAG 2 cut(s) 248, 444
BstDSI CCRYGG 1 cut(s) 591
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 3 cut(s) 120, 126, 139
BstMAI GTCTC 3 cut(s) 203, 254, 328
BstMBI GATC 3 cut(s) 117, 123, 136
BstMWI GCNNNNNNNGC 2 cut(s) 66, 440
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 30
BstSLI GKGCMC 2 cut(s) 107, 562
BstV1I GCAGC 1 cut(s) 603
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 3 cut(s) 83, 434, 497
BsuTUI ATCGAT 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 591
BtsIMutI CAGTG 3 cut(s) 407, 562, 657
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 1 cut(s) 621
CfoI GCGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 595
ClaI ATCGAT 1 cut(s) 126
CsiI ACCWGGT 1 cut(s) 30
Csp6I GTAC 2 cut(s) 73, 159
CviAII CATG 1 cut(s) 100
CviQI GTAC 2 cut(s) 73, 159
DdeI CTNAG 2 cut(s) 248, 444
DpnI GATC 3 cut(s) 119, 125, 138
DpnII GATC 3 cut(s) 117, 123, 136
DriI GACNNNNNGTC 1 cut(s) 578
Eam1105I GACNNNNNGTC 1 cut(s) 578
Eco24I GRGCYC 2 cut(s) 71, 445
Eco31I GGTCTC 1 cut(s) 328
Eco32I GATATC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 595
Eco88I CYCGRG 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 30
EcoRV GATATC 1 cut(s) 550
EcoT38I GRGCYC 2 cut(s) 71, 445
FaeI CATG 1 cut(s) 103
FaiI YATR 2 cut(s) 101, 114
FatI CATG 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 617
FriOI GRGCYC 2 cut(s) 71, 445
Fsp4HI GCNGC 1 cut(s) 617
FspBI CTAG 2 cut(s) 536, 620
GlaI GCGC 1 cut(s) 302
GluI GCNGC 1 cut(s) 617
HaeIII GGCC 3 cut(s) 83, 434, 497
HhaI GCGC 1 cut(s) 303
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 1 cut(s) 507
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 3 cut(s) 388, 407, 560
Hpy188I TCNGA 4 cut(s) 172, 447, 633, 662
Hpy188III TCNNGA 5 cut(s) 121, 140, 208, 259, 293
Hpy8I GTNNAC 3 cut(s) 388, 407, 560
Hpy99I CGWCG 4 cut(s) 92, 95, 172, 440
HpyAV CCTTC 2 cut(s) 50, 327
HpyCH4III ACNGT 5 cut(s) 88, 280, 404, 469, 595
HpyCH4V TGCA 5 cut(s) 45, 344, 362, 377, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 440
HpyF3I CTNAG 2 cut(s) 248, 444
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 3 cut(s) 117, 123, 136
LpnPI CCDG 8 cut(s) 17, 44, 50, 134, 171, 201, 249, 348
Lsp1109I GCAGC 1 cut(s) 603
LweI GCATC 2 cut(s) 118, 199
MabI ACCWGGT 1 cut(s) 30
MaeI CTAG 2 cut(s) 536, 620
MaeIII GTNAC 2 cut(s) 367, 463
MalI GATC 3 cut(s) 119, 125, 138
MboI GATC 3 cut(s) 117, 123, 136
MfeI CAATTG 1 cut(s) 378
MhlI GDGCHC 4 cut(s) 71, 107, 445, 562
MluCI AATT 3 cut(s) 378, 501, 600
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 7 cut(s) 17, 73, 166, 243, 376, 487, 651
MroXI GAANNNNTTC 1 cut(s) 60
MseI TTAA 1 cut(s) 627
MspR9I CCNGG 1 cut(s) 32
MunI CAATTG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 66, 440
NdeII GATC 3 cut(s) 117, 123, 136
NheI GCTAGC 1 cut(s) 619
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 485
PaqCI CACCTGC 1 cut(s) 353
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 132
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 507
PflFI GACNNNGTC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 595
PspXI VCTCGAGB 1 cut(s) 485
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 2 cut(s) 74, 160
RsaNI GTAC 2 cut(s) 73, 159
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 1 cut(s) 617
Sau3AI GATC 3 cut(s) 117, 123, 136
Sau96I GGNCC 1 cut(s) 595
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 4 cut(s) 71, 107, 445, 562
SexAI ACCWGGT 1 cut(s) 30
SfaNI GCATC 2 cut(s) 118, 199
Sfr274I CTCGAG 1 cut(s) 485
SinI GGWCC 1 cut(s) 595
SlaI CTCGAG 1 cut(s) 485
SmlI CTYRAG 2 cut(s) 485, 606
SmoI CTYRAG 2 cut(s) 485, 606
Sse9I AATT 3 cut(s) 378, 501, 600
SsiI CCGC 1 cut(s) 461
SspMI CTAG 2 cut(s) 536, 620
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 5 cut(s) 88, 280, 404, 469, 595
TaqI TCGA 6 cut(s) 36, 126, 207, 258, 486, 492
TasI AATT 3 cut(s) 378, 501, 600
TfiI GAWTC 1 cut(s) 507
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 3 cut(s) 414, 562, 657
TseI GCWGC 1 cut(s) 616
TspDTI ATGAA 1 cut(s) 278
TspRI CASTG 3 cut(s) 414, 562, 657
Tth111I GACNNNGTC 1 cut(s) 32
Van91I CCANNNNNTGG 1 cut(s) 413
VneI GTGCAC 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 595
XhoI CTCGAG 1 cut(s) 485
XmnI GAANNNNTTC 1 cut(s) 60
XspI CTAG 2 cut(s) 536, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.