RLG00000024490

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000631
Physical Location & Seq
Reverse (-)
36379058 .. 36379504
447 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024490

Sequence Viewer

Length: 447 bp
ATGGCACACTTTTCGTTCCAAAGAGGCGACCAGGTCGAAGTCTGCAGCAAACTCGAAGGCTTTCTGGGTTCGTACTACGAGGCCACCATCGTCGCAAACATGGGCACCAACTATGTGATCCAGTACAACAACCTGGTCGAGGAGTTCAACGACTCTGTGCCGCTGAAAGAGACCGTCAAGGCGGCGGAGGTCCGGCCACTGCCACCGGAAATCAGGGAGGCTAATGCTGTGTTTCATGTGGGTGATAGGATCGATGCTTACGATCTTGATGGGTGGTGGGTCGGTACAATTTCGTCGGAGGAAAATGGATCTGGGCATCAGTCTGTGTTTTTCGAGACTACAGGGCAAGAGCTTGATTACCCAGTTTCGAAGCTGAGGGTTCATCAAGATTGGCGCAATGGGAAATGGGTGTCGTCCAAGAAGACCAAGAGGAGTGCTGTGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

149

Amino Acids

16.8

Weight (kDa)

5.36

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 9 - 69 6.1e-16 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AciI CCGC 3 cut(s) 161, 182, 185
AclWI GGATC 3 cut(s) 112, 257, 316
AcoI YGGCCR 1 cut(s) 194
AfaI GTAC 3 cut(s) 74, 125, 286
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 2 cut(s) 30, 132
AluBI AGCT 2 cut(s) 352, 373
AluI AGCT 2 cut(s) 352, 373
Alw26I GTCTC 2 cut(s) 164, 329
AlwI GGATC 3 cut(s) 112, 257, 316
AoxI GGCC 2 cut(s) 81, 194
ApeKI GCWGC 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 60
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 254
AsuII TTCGAA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 428
BbvCI CCTCAGC 1 cut(s) 374
BbvI GCAGC 1 cut(s) 57
BccI CCATC 2 cut(s) 95, 263
BcgI CGANNNNNNTGC 3 cut(s) 28, 34, 68
BciT130I CCWGG 2 cut(s) 32, 134
BcoDI GTCTC 2 cut(s) 164, 329
BfmI CTRYAG 2 cut(s) 43, 339
BisI GCNGC 3 cut(s) 46, 161, 183
BlsI GCNGC 3 cut(s) 47, 162, 184
Bme1390I CCNGG 2 cut(s) 32, 134
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 2 cut(s) 32, 134
BmrI ACTGGG 1 cut(s) 356
BmsI GCATC 2 cut(s) 244, 325
BmuI ACTGGG 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 428
Bpu10I CCTNAGC 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 368
Bsa29I ATCGAT 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 2 cut(s) 121, 362
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 2 cut(s) 32, 134
BseCI ATCGAT 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 365
BseNI ACTGG 2 cut(s) 121, 362
BseRI GAGGAG 2 cut(s) 155, 445
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 1 cut(s) 57
BshFI GGCC 2 cut(s) 83, 196
BshNI GGYRCC 1 cut(s) 104
BshVI ATCGAT 1 cut(s) 252
BsiSI CCGG 2 cut(s) 193, 206
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 164, 329
BsnI GGCC 2 cut(s) 83, 196
Bso31I GGTCTC 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 4 cut(s) 117, 249, 262, 308
BspACI CCGC 3 cut(s) 161, 182, 185
BspANI GGCC 2 cut(s) 83, 196
BspCNI CTCAG 1 cut(s) 366
BspDI ATCGAT 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 47
BspPI GGATC 3 cut(s) 112, 257, 316
BspT104I TTCGAA 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 403
BsrI ACTGG 2 cut(s) 121, 362
BssMI GATC 4 cut(s) 117, 249, 262, 308
Bst2UI CCWGG 2 cut(s) 32, 134
Bst4CI ACNGT 1 cut(s) 175
BstBI TTCGAA 1 cut(s) 368
BstDEI CTNAG 1 cut(s) 374
BstENI CCTNNNNNAGG 1 cut(s) 137
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 4 cut(s) 120, 252, 265, 311
BstMAI GTCTC 2 cut(s) 164, 329
BstMBI GATC 4 cut(s) 117, 249, 262, 308
BstNI CCWGG 2 cut(s) 32, 134
BstSCI CCNGG 2 cut(s) 30, 132
BstSFI CTRYAG 2 cut(s) 43, 339
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
Bsu15I ATCGAT 1 cut(s) 252
BsuRI GGCC 2 cut(s) 83, 196
BsuTUI ATCGAT 1 cut(s) 252
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 197
CfoI GCGC 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 190
ClaI ATCGAT 1 cut(s) 252
CsiI ACCWGGT 2 cut(s) 30, 132
Csp6I GTAC 3 cut(s) 73, 124, 285
CviAII CATG 2 cut(s) 100, 236
CviJI RGCY 6 cut(s) 60, 83, 196, 221, 352, 373
CviKI_1 RGCY 6 cut(s) 60, 83, 196, 221, 352, 373
CviQI GTAC 3 cut(s) 73, 124, 285
DdeI CTNAG 1 cut(s) 374
DpnI GATC 4 cut(s) 119, 251, 264, 310
DpnII GATC 4 cut(s) 117, 249, 262, 308
EaeI YGGCCR 1 cut(s) 194
EciI GGCGGA 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 190
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 30, 132
FaeI CATG 2 cut(s) 103, 239
FaiI YATR 3 cut(s) 101, 114, 237
FatI CATG 2 cut(s) 99, 235
Fnu4HI GCNGC 3 cut(s) 46, 161, 183
Fsp4HI GCNGC 3 cut(s) 46, 161, 183
GlaI GCGC 1 cut(s) 395
GluI GCNGC 3 cut(s) 46, 161, 183
HaeIII GGCC 2 cut(s) 83, 196
HapII CCGG 2 cut(s) 193, 206
HhaI GCGC 1 cut(s) 396
Hin1II CATG 2 cut(s) 103, 239
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HinfI GANTC 1 cut(s) 152
HpaII CCGG 2 cut(s) 193, 206
HphI GGTGA 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 3 cut(s) 266, 334, 386
Hpy99I CGWCG 2 cut(s) 95, 298
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 45
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 2 cut(s) 103, 239
HspAI GCGC 1 cut(s) 394
Kzo9I GATC 4 cut(s) 117, 249, 262, 308
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 2 cut(s) 244, 325
MabI ACCWGGT 2 cut(s) 30, 132
MalI GATC 4 cut(s) 119, 251, 264, 310
MboI GATC 4 cut(s) 117, 249, 262, 308
MboII GAAGA 1 cut(s) 433
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 1 cut(s) 288
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 8 cut(s) 17, 73, 133, 181, 211, 292, 369, 423
MroXI GAANNNNTTC 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 2 cut(s) 193, 206
MspR9I CCNGG 2 cut(s) 32, 134
MvaI CCWGG 2 cut(s) 32, 134
NdeII GATC 4 cut(s) 117, 249, 262, 308
NlaIII CATG 2 cut(s) 103, 239
NlaIV GGNNCC 1 cut(s) 106
NspV TTCGAA 1 cut(s) 368
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 60
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 3 cut(s) 47, 162, 184
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp6I CCWGG 2 cut(s) 30, 132
PspGI CCWGG 2 cut(s) 30, 132
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 190
PstI CTGCAG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 308
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 3 cut(s) 74, 125, 286
RsaNI GTAC 3 cut(s) 73, 124, 285
RseI CAYNNNNRTG 1 cut(s) 240
SatI GCNGC 3 cut(s) 46, 161, 183
Sau3AI GATC 4 cut(s) 117, 249, 262, 308
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 32, 134
SduI GDGCHC 1 cut(s) 107
SetI ASST 5 cut(s) 36, 135, 192, 354, 375
SexAI ACCWGGT 2 cut(s) 30, 132
SfaNI GCATC 2 cut(s) 244, 325
SfcI CTRYAG 2 cut(s) 43, 339
SfuI TTCGAA 1 cut(s) 368
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 240
Sse9I AATT 1 cut(s) 288
SsiI CCGC 3 cut(s) 161, 182, 185
StyD4I CCNGG 2 cut(s) 30, 132
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 6 cut(s) 36, 54, 138, 252, 333, 368
TasI AATT 1 cut(s) 288
TatI WGTACW 1 cut(s) 123
TauI GCSGC 2 cut(s) 163, 185
TscAI CASTG 1 cut(s) 204
TseI GCWGC 1 cut(s) 45
TspDTI ATGAA 2 cut(s) 224, 371
TspRI CASTG 1 cut(s) 204
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 190
XagI CCTNNNNNAGG 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.