Rh6DG324100

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000631
Physical Location & Seq
Reverse (-)
52866185 .. 52866953
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG324100.1

Sequence Viewer

Length: 570 bp
ATGAATGTTTGCTCCAAATGTACCCTTCAAATAGGGGATGAAGTGGAAGTGTGCTGCAATTCGGAAGGATTTCTTGGCTCATATTGGAAAGCAATCATAGTCGCAAATATGGGTACGAACTACTTGGTTGAGTACAAGGATTTTGTGGACGAAGATAATGAATCTACACCTTTACAAGAGATTGTCATAGCGAAAGATGTCCGGCCTATACCACCTGTCATTGTGCCATCTAAATATTCTAGTCTTAAAGGGTATAGGGTCGATGCATTGATCAATGACGGTTGGTGGGTTGGAACTATTTCTAGGAGGAAAGACCCCGACCACTACTTCGTTTTCTTTGAAACCACTGGAATAGAGACTCTTTACCCGCTTTCAAAGTTGAGGTTTCATATGGAGTGGCTCAATGGGGTCTGGGTTCCTCCCAACAAAAGGTGCATCCCAATTTCTTCGAAAAAGGGGTTCGCACCAACTTCTTCAAAGAAACCGAAGAAAATGGGTGCACCAGCTTTTTCAAAGAAGGAGTTCACACCAGTTTCTTTTGAGGAGAGGAGCGAACTCATGGAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

189

Amino Acids

21.51

Weight (kDa)

6.74

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 12 - 72 4.4e-19 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 368
AfaI GTAC 3 cut(s) 22, 115, 134
AfiI CCNNNNNNNGG 1 cut(s) 429
AgsI TTSAA 5 cut(s) 29, 341, 375, 477, 513
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AluBI AGCT 1 cut(s) 506
AluI AGCT 1 cut(s) 506
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 1 cut(s) 350
Alw44I GTGCAC 1 cut(s) 498
AoxI GGCC 1 cut(s) 203
ApaLI GTGCAC 1 cut(s) 498
ApeKI GCWGC 1 cut(s) 54
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
Asp700I GAANNNNTTC 3 cut(s) 69, 298, 521
AsuII TTCGAA 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 502
Bbv12I GWGCWC 1 cut(s) 502
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 235
BclI TGATCA 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 2 cut(s) 240, 303
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 417
BmsI GCATC 2 cut(s) 253, 444
Bpu14I TTCGAA 1 cut(s) 449
Bsc4I CCNNNNNNNGG 1 cut(s) 429
Bse1I ACTGG 2 cut(s) 352, 530
BseGI GGATG 2 cut(s) 43, 435
BseLI CCNNNNNNNGG 1 cut(s) 429
BseNI ACTGG 2 cut(s) 352, 530
BseRI GAGGAG 2 cut(s) 557, 562
BseSI GKGCMC 1 cut(s) 502
BseXI GCAGC 1 cut(s) 41
BshFI GGCC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 502
BsiSI CCGG 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 429
BsmAI GTCTC 1 cut(s) 350
BsnI GGCC 1 cut(s) 205
Bsp119I TTCGAA 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 502
Bsp143I GATC 1 cut(s) 270
BspACI CCGC 1 cut(s) 368
BspANI GGCC 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 417
BspT104I TTCGAA 1 cut(s) 449
BsrI ACTGG 2 cut(s) 352, 530
BssMI GATC 1 cut(s) 270
Bst4CI ACNGT 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 449
BstF5I GGATG 2 cut(s) 43, 435
BstKTI GATC 1 cut(s) 273
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 502
BstV1I GCAGC 1 cut(s) 41
BsuRI GGCC 1 cut(s) 205
BtsCI GGATG 2 cut(s) 43, 435
BtsIMutI CAGTG 1 cut(s) 345
Csp6I GTAC 3 cut(s) 21, 114, 133
CviAII CATG 1 cut(s) 559
CviJI RGCY 4 cut(s) 78, 205, 400, 506
CviKI_1 RGCY 4 cut(s) 78, 205, 400, 506
CviQI GTAC 3 cut(s) 21, 114, 133
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
EcoT22I ATGCAT 1 cut(s) 268
FaeI CATG 1 cut(s) 562
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 1 cut(s) 558
FauI CCCGC 1 cut(s) 375
FauNDI CATATG 1 cut(s) 390
FbaI TGATCA 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 2 cut(s) 50, 422
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 2 cut(s) 240, 303
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 205
HapII CCGG 1 cut(s) 202
Hin1II CATG 1 cut(s) 562
HinfI GANTC 2 cut(s) 161, 358
HpaII CCGG 1 cut(s) 202
Hpy166II GTNNAC 3 cut(s) 148, 500, 525
Hpy188I TCNGA 1 cut(s) 64
Hpy8I GTNNAC 3 cut(s) 148, 500, 525
HpyAV CCTTC 3 cut(s) 35, 59, 511
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 4 cut(s) 57, 266, 435, 500
Hsp92II CATG 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 1 cut(s) 270
LmnI GCTCC 2 cut(s) 17, 549
LpnPI CCDG 6 cut(s) 215, 228, 333, 397, 516, 543
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 2 cut(s) 253, 444
MaeI CTAG 2 cut(s) 240, 303
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 4 cut(s) 164, 438, 465, 499
MhlI GDGCHC 1 cut(s) 502
MluCI AATT 3 cut(s) 58, 441, 563
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 5 cut(s) 300, 375, 429, 535, 540
Mph1103I ATGCAT 1 cut(s) 268
MroXI GAANNNNTTC 3 cut(s) 69, 298, 521
MseI TTAA 1 cut(s) 246
MspI CCGG 1 cut(s) 202
NdeI CATATG 1 cut(s) 390
NdeII GATC 1 cut(s) 270
NlaIII CATG 1 cut(s) 562
NlaIV GGNNCC 1 cut(s) 417
NsiI ATGCAT 1 cut(s) 268
NspV TTCGAA 1 cut(s) 449
PdmI GAANNNNTTC 3 cut(s) 69, 298, 521
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 417
RsaI GTAC 3 cut(s) 22, 115, 134
RsaNI GTAC 3 cut(s) 21, 114, 133
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 270
SchI GAGTC 1 cut(s) 352
SduI GDGCHC 1 cut(s) 502
SetI ASST 5 cut(s) 172, 217, 386, 434, 508
SfaNI GCATC 2 cut(s) 253, 444
SfuI TTCGAA 1 cut(s) 449
Sse9I AATT 3 cut(s) 58, 441, 563
SsiI CCGC 1 cut(s) 368
SspI AATATT 1 cut(s) 236
SspMI CTAG 2 cut(s) 240, 303
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 2 cut(s) 261, 449
TasI AATT 3 cut(s) 58, 441, 563
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 352
TseI GCWGC 1 cut(s) 54
TspDTI ATGAA 4 cut(s) 17, 54, 174, 377
TspRI CASTG 1 cut(s) 352
VneI GTGCAC 1 cut(s) 498
XmnI GAANNNNTTC 3 cut(s) 69, 298, 521
XspI CTAG 2 cut(s) 240, 303
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.