RchiOBHm_Chr7g0235761

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000631
Physical Location & Seq
Reverse (-)
60695366 .. 60695811
446 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21127

Sequence Viewer

Length: 351 bp
ATGGGATACTTTTCATTCCAAAAAGGCAACCAATTCGAAGTCTGCAGCAAACTCGATGGATTTCTGGGCTCGTACTATAAGGCCACTGTCGTAGCAAACATGGGCACCAACTATGTGATCCAGTACAAAAACCTTGTGGAGGAGTTCAACGACTCTGTGTCGCTCAAAGAGACCATTAAGGCGCCGAGTACGATTTCGTCGGAGGAAAATGGGTCTGGGCATCAGTCTGTGTTTTTCGAGACTACTGGGCAAGAGCTTGATTACCCAGTTTTGAAGCTGATGGTTCATCAAGATTGGCGTAATGGAAAATGGGTGTCGTCCAAGAAGACCAAGAGGAATGCTGTGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

116

Amino Acids

13.19

Weight (kDa)

8.65

Isoelectric Point (pI)

26.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 9 - 61 2.3e-08 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 104, 181
AclWI GGATC 1 cut(s) 112
AcyI GRCGYC 1 cut(s) 182
AfaI GTAC 3 cut(s) 74, 125, 190
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 2 cut(s) 148, 274
AhdI GACNNNNNGTC 1 cut(s) 157
AluBI AGCT 2 cut(s) 256, 277
AluI AGCT 2 cut(s) 256, 277
Alw26I GTCTC 2 cut(s) 164, 233
AlwI GGATC 1 cut(s) 112
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 45
AspLEI GCGC 1 cut(s) 184
AsuII TTCGAA 1 cut(s) 36
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 2 cut(s) 104, 181
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 332
BbvI GCAGC 1 cut(s) 57
BccI CCATC 2 cut(s) 50, 274
BcgI CGANNNNNNTGC 4 cut(s) 16, 34, 50, 68
BcoDI GTCTC 2 cut(s) 164, 233
BfmI CTRYAG 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 185
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BmeRI GACNNNNNGTC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 106, 183
BmrI ACTGGG 2 cut(s) 255, 260
BmsI GCATC 1 cut(s) 229
BmuI ACTGGG 2 cut(s) 255, 260
BpiI GAAGAC 1 cut(s) 332
Bpu14I TTCGAA 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 3 cut(s) 121, 250, 266
BseLI CCNNNNNNNGG 1 cut(s) 139
BseNI ACTGG 3 cut(s) 121, 250, 266
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 1 cut(s) 57
BshFI GGCC 1 cut(s) 83
BshNI GGYRCC 2 cut(s) 104, 181
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 164, 233
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 71, 107
Bsp143I GATC 1 cut(s) 117
BspANI GGCC 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 106, 183
BspMAI CTGCAG 1 cut(s) 47
BspPI GGATC 1 cut(s) 112
BspT104I TTCGAA 1 cut(s) 36
BspT107I GGYRCC 2 cut(s) 104, 181
BspTNI GGTCTC 1 cut(s) 164
BsrI ACTGG 3 cut(s) 121, 250, 266
BssMI GATC 1 cut(s) 117
BssNI GRCGYC 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 182
BstBI TTCGAA 1 cut(s) 36
BstENI CCTNNNNNAGG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 1 cut(s) 120
BstMAI GTCTC 2 cut(s) 164, 233
BstMBI GATC 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 332
BsuRI GGCC 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 84
CfoI GCGC 1 cut(s) 184
Csp6I GTAC 3 cut(s) 73, 124, 189
CviAII CATG 1 cut(s) 100
CviJI RGCY 4 cut(s) 69, 83, 256, 277
CviKI_1 RGCY 4 cut(s) 69, 83, 256, 277
CviQI GTAC 3 cut(s) 73, 124, 189
DinI GGCGCC 1 cut(s) 183
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
DriI GACNNNNNGTC 1 cut(s) 157
Eam1105I GACNNNNNGTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 71
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
FaeI CATG 1 cut(s) 103
FaiI YATR 3 cut(s) 78, 101, 114
FatI CATG 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 46
GlaI GCGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 83
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HinfI GANTC 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 238, 290
Hpy99I CGWCG 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 1 cut(s) 182
KasI GGCGCC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 117
LpnPI CCDG 5 cut(s) 50, 134, 201, 231, 279
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 1 cut(s) 229
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 71, 107
MluCI AATT 1 cut(s) 32
Mly113I GGCGCC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 3 cut(s) 133, 196, 327
MseI TTAA 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 343
NarI GGCGCC 1 cut(s) 182
NdeII GATC 1 cut(s) 117
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 2 cut(s) 106, 183
NmeAIII GCCGAG 1 cut(s) 210
NspV TTCGAA 1 cut(s) 36
PctI GAATGC 1 cut(s) 343
PkrI GCNGC 1 cut(s) 47
PleI GAGTC 1 cut(s) 146
PluTI GGCGCC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 106, 183
PstI CTGCAG 1 cut(s) 47
RsaI GTAC 3 cut(s) 74, 125, 190
RsaNI GTAC 3 cut(s) 73, 124, 189
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 1 cut(s) 117
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 2 cut(s) 71, 107
SetI ASST 3 cut(s) 135, 258, 279
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 43
SfoI GGCGCC 1 cut(s) 183
SfuI TTCGAA 1 cut(s) 36
Sse9I AATT 1 cut(s) 32
SspDI GGCGCC 1 cut(s) 181
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 3 cut(s) 36, 54, 237
TasI AATT 1 cut(s) 32
TatI WGTACW 1 cut(s) 123
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 91
TseI GCWGC 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 275
TspRI CASTG 1 cut(s) 91
XagI CCTNNNNNAGG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.