FvH4_6g05270

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000631
Physical Location & Seq
Forward (+)
2969478 .. 2970201
724 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05270.t1

Sequence Viewer

Length: 459 bp
ATGACGTTCCACTCAGAGATTTCGTTCCAAAGAGGCGATGAGGTTGAAGTCTGCAGCAAAGTTCCAGGGTTCCTAGGCTCTTACTTTGAAGCAACCATAGTAGCAAAAAAGGGCAGCAACTATATGGTTCAGTACAAGAACCTGGTGGAGGAATATGACGAGTCTGTACCTTTGAAAGAGACTGTTATGGCAGATGAGGTAAGGCCTATGCCGCCGGAAGTTACCGAGGCTAGTGAGTTTCATATTGGCAACAGGGTTGATGCTAACGACCTCGATGGGTGGTGGGTTGGTACAATTTCTACTGAGAAAAATGTGTATGGTTTTCACTATGTGTTTTTCGAAACCACCGGGGAAGAGACTGCTTATCCACTCTGGAAGCTGAGAGTTCATCAAGCGTGGCGCAATGGAAAGTGGGAAGTGTCTTCCAAGAAGAGGAAGAGGCTTGCTTTGCTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

153

Amino Acids

17.61

Weight (kDa)

5.42

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 12 - 72 8.2e-19 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AdeI CACNNNGTG 1 cut(s) 331
AfaI GTAC 3 cut(s) 134, 168, 292
AfiI CCNNNNNNNGG 2 cut(s) 148, 432
AgsI TTSAA 3 cut(s) 47, 89, 175
AjnI CCWGG 2 cut(s) 64, 141
AluBI AGCT 1 cut(s) 379
AluI AGCT 1 cut(s) 379
Alw26I GTCTC 2 cut(s) 173, 350
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 2 cut(s) 54, 114
AspA2I CCTAGG 1 cut(s) 73
AspLEI GCGC 1 cut(s) 402
AsuC2I CCSGG 1 cut(s) 349
AsuII TTCGAA 1 cut(s) 339
AvrII CCTAGG 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 66, 126
BccI CCATC 1 cut(s) 269
BciT130I CCWGG 2 cut(s) 66, 143
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 173, 350
BfaI CTAG 2 cut(s) 74, 231
BfmI CTRYAG 1 cut(s) 52
BisI GCNGC 3 cut(s) 55, 115, 212
BlnI CCTAGG 1 cut(s) 73
BlsI GCNGC 3 cut(s) 56, 116, 213
Bme1390I CCNGG 3 cut(s) 66, 143, 349
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 3 cut(s) 66, 143, 349
BmsI GCATC 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 414
Bpu14I TTCGAA 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 349
BsaJI CCNNGG 4 cut(s) 65, 73, 225, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 432
Bse3DI GCAATG 1 cut(s) 409
BseBI CCWGG 2 cut(s) 66, 143
BseDI CCNNGG 4 cut(s) 65, 73, 225, 348
BseLI CCNNNNNNNGG 2 cut(s) 148, 432
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 3 cut(s) 27, 294, 371
BseXI GCAGC 2 cut(s) 66, 126
BshFI GGCC 1 cut(s) 205
BsiSI CCGG 2 cut(s) 215, 348
BslI CCNNNNNNNGG 2 cut(s) 148, 432
BsmAI GTCTC 2 cut(s) 173, 350
BsnI GGCC 1 cut(s) 205
Bsp119I TTCGAA 1 cut(s) 339
BspACI CCGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 3 cut(s) 26, 295, 372
BspLI GGNNCC 1 cut(s) 71
BspMAI CTGCAG 1 cut(s) 56
BspT104I TTCGAA 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 409
BssECI CCNNGG 4 cut(s) 65, 73, 225, 348
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 2 cut(s) 66, 143
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 3 cut(s) 348, 425, 431
BstBI TTCGAA 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 3 cut(s) 13, 303, 380
BstENI CCTNNNNNAGG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 402
BstMAI GTCTC 2 cut(s) 173, 350
BstMWI GCNNNNNNNGC 2 cut(s) 211, 448
BstNI CCWGG 2 cut(s) 66, 143
BstSCI CCNGG 3 cut(s) 64, 141, 347
BstSFI CTRYAG 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 66, 126
BstV2I GAAGAC 1 cut(s) 414
BsuRI GGCC 1 cut(s) 205
BtgZI GCGATG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 444
CfoI GCGC 1 cut(s) 402
CsiI ACCWGGT 1 cut(s) 141
Csp6I GTAC 3 cut(s) 133, 167, 291
CviJI RGCY 5 cut(s) 78, 205, 230, 379, 442
CviKI_1 RGCY 5 cut(s) 78, 205, 230, 379, 442
CviQI GTAC 3 cut(s) 133, 167, 291
DdeI CTNAG 3 cut(s) 13, 303, 380
DraIII CACNNNGTG 1 cut(s) 331
Eam1104I CTCTTC 3 cut(s) 348, 425, 431
EarI CTCTTC 3 cut(s) 348, 425, 431
Eco130I CCWWGG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 64, 141
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaiI YATR 9 cut(s) 98, 123, 125, 156, 188, 209, 243, 318, 330
Fnu4HI GCNGC 3 cut(s) 55, 115, 212
Fsp4HI GCNGC 3 cut(s) 55, 115, 212
FspBI CTAG 2 cut(s) 74, 231
GlaI GCGC 1 cut(s) 401
GluI GCNGC 3 cut(s) 55, 115, 212
HaeIII GGCC 1 cut(s) 205
HapII CCGG 2 cut(s) 215, 348
HhaI GCGC 1 cut(s) 402
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HinfI GANTC 1 cut(s) 161
HpaII CCGG 2 cut(s) 215, 348
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 373
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 5
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 448
HpyF3I CTNAG 3 cut(s) 13, 303, 380
HpySE526I ACGT 1 cut(s) 5
HspAI GCGC 1 cut(s) 400
LpnPI CCDG 8 cut(s) 51, 78, 128, 155, 228, 238, 358, 361
Lsp1109I GCAGC 2 cut(s) 66, 126
LweI GCATC 1 cut(s) 250
MabI ACCWGGT 1 cut(s) 141
MaeI CTAG 2 cut(s) 74, 231
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 4 cut(s) 365, 414, 442, 448
MluCI AATT 1 cut(s) 294
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 8 cut(s) 26, 34, 142, 190, 220, 281, 426, 432
MspI CCGG 2 cut(s) 215, 348
MspR9I CCNGG 3 cut(s) 66, 143, 349
MvaI CCWGG 2 cut(s) 66, 143
MwoI GCNNNNNNNGC 2 cut(s) 211, 448
NciI CCSGG 1 cut(s) 349
NlaIV GGNNCC 1 cut(s) 71
NspV TTCGAA 1 cut(s) 339
PceI AGGCCT 1 cut(s) 205
PkrI GCNGC 3 cut(s) 56, 116, 213
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Psp6I CCWGG 2 cut(s) 64, 141
PspGI CCWGG 2 cut(s) 64, 141
PspN4I GGNNCC 1 cut(s) 71
PstI CTGCAG 1 cut(s) 56
RsaI GTAC 3 cut(s) 134, 168, 292
RsaNI GTAC 3 cut(s) 133, 167, 291
SatI GCNGC 3 cut(s) 55, 115, 212
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 3 cut(s) 66, 143, 349
SetI ASST 7 cut(s) 8, 45, 144, 172, 201, 273, 381
SexAI ACCWGGT 1 cut(s) 141
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 52
SfuI TTCGAA 1 cut(s) 339
Sse9I AATT 1 cut(s) 294
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 1 cut(s) 212
SspMI CTAG 2 cut(s) 74, 231
StuI AGGCCT 1 cut(s) 205
StyD4I CCNGG 3 cut(s) 64, 141, 347
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 273, 339
TasI AATT 1 cut(s) 294
TatI WGTACW 1 cut(s) 132
TauI GCSGC 1 cut(s) 214
TseI GCWGC 2 cut(s) 54, 114
TspDTI ATGAA 2 cut(s) 230, 377
XagI CCTNNNNNAGG 1 cut(s) 146
XmaJI CCTAGG 1 cut(s) 73
XspI CTAG 2 cut(s) 74, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.