Rw7G037160

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000631
Physical Location & Seq
Reverse (-)
56480413 .. 56480858
446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037160.1

Sequence Viewer

Length: 390 bp
ATGGGATACTTTTCGTTCCAAAAAGGCAACCAATTCCAAGTCTGCAGCAAACTCGATGGATTTCTGGGCTTGTACTATGAGGCCACTGTCGTCACAAACATGGGCACCAACTATGTGTTCCAGTACAAAAACCTCATGGAGGAGTTCAACGACTCTGTGTCGCTCAAAGAGACCATTAAGGCGCCGAGGTCCAGCCACTGCCGCAGGAAATCAGGGAGGCTAATGCTTAAGATTTCGTCTGAGGAAAATGGGTCTGGGCATCAGTCTGTGTTTTTCGAGACTACTGGGCAAGAGCTTGATTACCCAGTTTTGAAGTTGATGGTTCATCAAGATTGGCGCAATGGAAAATGGGTGTCGTCCAAGAAGACCAAGAGGAATGCTGTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

129

Amino Acids

14.89

Weight (kDa)

9.39

Isoelectric Point (pI)

27.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 104, 181
AciI CCGC 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 182
AfaI GTAC 2 cut(s) 74, 125
AfiI CCNNNNNNNGG 1 cut(s) 139
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 2 cut(s) 148, 313
AhdI GACNNNNNGTC 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 2 cut(s) 164, 272
AlwNI CAGNNNCTG 1 cut(s) 198
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 45
AspLEI GCGC 2 cut(s) 184, 339
AspS9I GGNCC 1 cut(s) 189
AvaII GGWCC 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 2 cut(s) 104, 181
BbsI GAAGAC 1 cut(s) 371
BbvI GCAGC 1 cut(s) 57
BccI CCATC 2 cut(s) 50, 313
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BcoDI GTCTC 2 cut(s) 164, 272
BfmI CTRYAG 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 185
BfrI CTTAAG 1 cut(s) 227
BisI GCNGC 2 cut(s) 46, 202
BlsI GCNGC 2 cut(s) 47, 203
Bme18I GGWCC 1 cut(s) 189
BmeRI GACNNNNNGTC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 106, 183
BmrI ACTGGG 2 cut(s) 294, 299
BmsI GCATC 1 cut(s) 268
BmuI ACTGGG 2 cut(s) 294, 299
BpiI GAAGAC 1 cut(s) 371
BsaHI GRCGYC 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 3 cut(s) 121, 289, 305
Bse3DI GCAATG 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 3 cut(s) 121, 289, 305
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 1 cut(s) 57
BshFI GGCC 1 cut(s) 83
BshNI GGYRCC 2 cut(s) 104, 181
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 164, 272
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 107
BspACI CCGC 1 cut(s) 202
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 106, 183
BspMAI CTGCAG 1 cut(s) 47
BspT107I GGYRCC 2 cut(s) 104, 181
BspTI CTTAAG 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 3 cut(s) 121, 289, 305
BssECI CCNNGG 1 cut(s) 185
BssNI GRCGYC 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 182
BstAFI CTTAAG 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 240
BstENI CCTNNNNNAGG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 2 cut(s) 184, 339
BstMAI GTCTC 2 cut(s) 164, 272
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 371
BsuRI GGCC 1 cut(s) 83
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 84, 196
CaiI CAGNNNCTG 1 cut(s) 198
CfoI GCGC 2 cut(s) 184, 339
Cfr13I GGNCC 1 cut(s) 189
Csp6I GTAC 2 cut(s) 73, 124
CviAII CATG 2 cut(s) 100, 136
CviJI RGCY 5 cut(s) 69, 83, 195, 220, 295
CviKI_1 RGCY 5 cut(s) 69, 83, 195, 220, 295
CviQI GTAC 2 cut(s) 73, 124
DdeI CTNAG 1 cut(s) 240
DinI GGCGCC 1 cut(s) 183
DriI GACNNNNNGTC 1 cut(s) 157
Eam1105I GACNNNNNGTC 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 189
EcoNI CCTNNNNNAGG 1 cut(s) 137
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
FaeI CATG 2 cut(s) 103, 139
FaiI YATR 4 cut(s) 78, 101, 114, 137
FatI CATG 2 cut(s) 99, 135
Fnu4HI GCNGC 2 cut(s) 46, 202
Fsp4HI GCNGC 2 cut(s) 46, 202
GlaI GCGC 2 cut(s) 183, 338
GluI GCNGC 2 cut(s) 46, 202
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 83
HhaI GCGC 2 cut(s) 184, 339
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 2 cut(s) 103, 139
Hin6I GCGC 2 cut(s) 182, 337
HinP1I GCGC 2 cut(s) 182, 337
HinfI GANTC 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 2 cut(s) 277, 329
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 45, 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 240
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 2 cut(s) 103, 139
HspAI GCGC 2 cut(s) 182, 337
KasI GGCGCC 1 cut(s) 181
LpnPI CCDG 8 cut(s) 50, 134, 190, 198, 205, 240, 270, 318
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 1 cut(s) 268
MaeIII GTNAC 1 cut(s) 91
MboII GAAGA 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 1 cut(s) 32
Mly113I GGCGCC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 7 cut(s) 73, 133, 143, 180, 210, 235, 366
MseI TTAA 2 cut(s) 177, 228
MslI CAYNNNNRTG 1 cut(s) 98
MspCI CTTAAG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 382
MwoI GCNNNNNNNGC 1 cut(s) 201
NarI GGCGCC 1 cut(s) 182
NlaIII CATG 2 cut(s) 103, 139
NlaIV GGNNCC 2 cut(s) 106, 183
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 91
PctI GAATGC 1 cut(s) 382
PkrI GCNGC 2 cut(s) 47, 203
PleI GAGTC 1 cut(s) 146
PluTI GGCGCC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 106, 183
PspPI GGNCC 1 cut(s) 189
PstI CTGCAG 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 198
RsaI GTAC 2 cut(s) 74, 125
RsaNI GTAC 2 cut(s) 73, 124
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 2 cut(s) 177, 228
SatI GCNGC 2 cut(s) 46, 202
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 107
SetI ASST 3 cut(s) 135, 191, 297
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 43
SfoI GGCGCC 1 cut(s) 183
SinI GGWCC 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 32
SsiI CCGC 1 cut(s) 202
SspDI GGCGCC 1 cut(s) 181
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 2 cut(s) 54, 276
TasI AATT 1 cut(s) 32
TatI WGTACW 2 cut(s) 72, 123
TauI GCSGC 1 cut(s) 204
Tru1I TTAA 2 cut(s) 177, 228
Tru9I TTAA 2 cut(s) 177, 228
TscAI CASTG 2 cut(s) 91, 203
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 2 cut(s) 91, 203
Vha464I CTTAAG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 189
XagI CCTNNNNNAGG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.