Prupe.6G295700_v2.0.a1

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000631
Physical Location & Seq
Reverse (-)
27064120 .. 27064636
517 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G295700.1

Sequence Viewer

Length: 390 bp
ATGGCTTTCACCACAAGAAAAGTTTTTCAAGTAGGCGATGAGGTAGAAGTATGCAGCAAGCAAGACGGGTTTCACGGTTCGTATTATGAAGCGACTGTAATTGAAAACTTGGGGGACAAGGTTGATGCGTTGGCCAACGACGGTTGGTGGGCAGGCATCATTACTAGGAAGAGTGGAGACGACTGGTTTGTCTACTTTCCAAGCACTTTTGAGCATATAGCTTACCCTAAGAAGCACATCAGGCTTCATCTGGAGAGCCGCCGCAACGGGGGGGTTTCTCGCGATGGACGGGTCTTCTCTTGCGAGGGAAAGCCCCTGTCATGCAAGAAGAAAATGCGCATTGTGATGGGAGAATCATCATGGAGATCTGTTAAAGCTCGACTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

130

Amino Acids

14.71

Weight (kDa)

9.22

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
Acc16I TGCGCA 1 cut(s) 338
AccI GTMKAC 1 cut(s) 192
AccII CGCG 1 cut(s) 282
AciI CCGC 2 cut(s) 259, 262
AcoI YGGCCR 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 2 cut(s) 29, 104
AluBI AGCT 2 cut(s) 221, 377
AluI AGCT 2 cut(s) 221, 377
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 54
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspLEI GCGC 1 cut(s) 339
BalI TGGCCA 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 66
BccI CCATC 2 cut(s) 278, 340
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 1 cut(s) 165
BglII AGATCT 1 cut(s) 365
BisI GCNGC 3 cut(s) 55, 259, 262
BlsI GCNGC 3 cut(s) 56, 260, 263
BmsI GCATC 2 cut(s) 115, 165
BpiI GAAGAC 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 1 cut(s) 134
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 171
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 365
Bsp68I TCGCGA 1 cut(s) 282
BspACI CCGC 2 cut(s) 259, 262
BspANI GGCC 1 cut(s) 134
BspFNI CGCG 1 cut(s) 282
BsrI ACTGG 1 cut(s) 188
BssMI GATC 1 cut(s) 365
Bst4CI ACNGT 3 cut(s) 77, 97, 143
Bst6I CTCTTC 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 59, 154
BstDEI CTNAG 1 cut(s) 228
BstFNI CGCG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 1 cut(s) 368
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 1 cut(s) 365
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuRI GGCC 1 cut(s) 134
BtgZI GCGATG 2 cut(s) 51, 297
BtuMI TCGCGA 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 59, 154
CfoI GCGC 1 cut(s) 339
CviAII CATG 2 cut(s) 321, 360
CviJI RGCY 7 cut(s) 5, 134, 221, 244, 258, 313, 377
CviKI_1 RGCY 7 cut(s) 5, 134, 221, 244, 258, 313, 377
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 367
DpnII GATC 1 cut(s) 365
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 2 cut(s) 324, 363
FaiI YATR 6 cut(s) 52, 87, 216, 218, 322, 361
FalI AAGNNNNNCTT 1 cut(s) 366
FaqI GGGAC 1 cut(s) 128
FatI CATG 2 cut(s) 320, 359
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 55, 259, 262
Fsp4HI GCNGC 3 cut(s) 55, 259, 262
FspAI RTGCGCAY 1 cut(s) 338
FspBI CTAG 1 cut(s) 165
FspI TGCGCA 1 cut(s) 338
GlaI GCGC 1 cut(s) 338
GluI GCNGC 3 cut(s) 55, 259, 262
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 1 cut(s) 134
HhaI GCGC 1 cut(s) 339
Hin1II CATG 2 cut(s) 324, 363
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HinfI GANTC 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 251, 281
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 3 cut(s) 77, 97, 143
HpyCH4V TGCA 2 cut(s) 54, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 228
Hsp92II CATG 2 cut(s) 324, 363
HspAI GCGC 1 cut(s) 337
Kzo9I GATC 1 cut(s) 365
LpnPI CCDG 5 cut(s) 138, 169, 226, 236, 329
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 2 cut(s) 115, 165
MaeI CTAG 1 cut(s) 165
MalI GATC 1 cut(s) 367
MboI GATC 1 cut(s) 365
MboII GAAGA 3 cut(s) 181, 286, 340
MflI RGATCY 1 cut(s) 365
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 1 cut(s) 99
MluNI TGGCCA 1 cut(s) 134
MnlI CCTC 2 cut(s) 34, 298
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 1 cut(s) 134
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeII GATC 1 cut(s) 365
NlaIII CATG 2 cut(s) 324, 363
NruI TCGCGA 1 cut(s) 282
NsbI TGCGCA 1 cut(s) 338
PfeI GAWTC 1 cut(s) 353
PkrI GCNGC 3 cut(s) 56, 260, 263
PsuI RGATCY 1 cut(s) 365
RruI TCGCGA 1 cut(s) 282
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 3 cut(s) 55, 259, 262
Sau3AI GATC 1 cut(s) 365
SetI ASST 4 cut(s) 45, 123, 223, 379
SfaNI GCATC 2 cut(s) 115, 165
SmiMI CAYNNNNRTG 1 cut(s) 344
Sse9I AATT 1 cut(s) 99
SsiI CCGC 2 cut(s) 259, 262
SspMI CTAG 1 cut(s) 165
TaaI ACNGT 3 cut(s) 77, 97, 143
TaqI TCGA 1 cut(s) 379
TasI AATT 1 cut(s) 99
TauI GCSGC 2 cut(s) 261, 264
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseI GCWGC 1 cut(s) 54
TspDTI ATGAA 2 cut(s) 102, 236
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.