FvH4_2g23230

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000631
Physical Location & Seq
Reverse (-)
19023792 .. 19024395
604 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23230.t1

Sequence Viewer

Length: 528 bp
ATGGCTTCTCAATCAAAACGCACATTTCAAGTGGGAGATGCAGTCGAAGTGTGCTGCAACGAGGAAGGGTTTCTTGGCTCATATTGGGAAGCAACCATTATCGCAACGATCCGTAGCATCTGCTTGGTTGAGTACAAGCATTTTGTGGAGGAACATGATGAATCTACACCTCTGAGGGAGACTGTCAAGAGGAAAGACTTGCGGCCGCTGCCGCCTAATATTGTGCCTTCTAGGTATTCTAGTCTTCAAGGGCACAGAGTCGATGCTTTTCTCAAAGACGTCTGGTGGGTTGGAACGATTTCCAGGAAGGTAGACGCTGATCATTACGTTGTGTTCTTTGAGAACACTGGGGAAGAGATTGCTTGCCCCCTTTCAAAGTTGAGGTTTCATATGGACTGGTTCAATGGGGAGTGGGTTCCTTCCAAGAAACGACGTGCCCCGGTTACTCTAGAACTGTCAAGACCTGCCCCAGTTCCTTTGAAGAAGAAAGAAGAGGTTCGACGACGGACCTACTCCATGCCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

176

Amino Acids

20.34

Weight (kDa)

8.67

Isoelectric Point (pI)

66.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 12 - 72 8.1e-20 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
Acc36I ACCTGC 1 cut(s) 472
AccI GTMKAC 1 cut(s) 312
AciI CCGC 3 cut(s) 202, 206, 212
AclWI GGATC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 1 cut(s) 134
AgsI TTSAA 5 cut(s) 29, 248, 375, 403, 481
AjiI CACGTC 1 cut(s) 434
AjnI CCWGG 1 cut(s) 302
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 103
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 2 cut(s) 54, 208
Asp700I GAANNNNTTC 3 cut(s) 69, 298, 495
AspS9I GGNCC 1 cut(s) 507
AsuC2I CCSGG 1 cut(s) 440
AvaII GGWCC 1 cut(s) 507
BaeGI GKGCMC 2 cut(s) 255, 439
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 2 cut(s) 41, 195
BciT130I CCWGG 1 cut(s) 304
BclI TGATCA 1 cut(s) 319
BcnI CCSGG 1 cut(s) 440
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 3 cut(s) 231, 240, 449
BfuAI ACCTGC 1 cut(s) 472
BisI GCNGC 5 cut(s) 55, 203, 206, 209, 212
BlsI GCNGC 5 cut(s) 56, 204, 207, 210, 213
Bme1390I CCNGG 2 cut(s) 304, 440
Bme18I GGWCC 1 cut(s) 507
BmgBI CACGTC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 2 cut(s) 304, 440
BmrI ACTGGG 2 cut(s) 357, 464
BmsI GCATC 3 cut(s) 28, 126, 253
BmuI ACTGGG 2 cut(s) 357, 464
BpiI GAAGAC 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 438
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bse1I ACTGG 3 cut(s) 352, 401, 470
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 3 cut(s) 352, 401, 470
BseSI GKGCMC 2 cut(s) 255, 439
BseX3I CGGCCG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 41, 195
Bsh1285I CGRYCG 1 cut(s) 206
BshFI GGCC 1 cut(s) 205
BsiEI CGRYCG 1 cut(s) 206
BsiSI CCGG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 205
Bsp1286I GDGCHC 2 cut(s) 255, 439
Bsp143I GATC 2 cut(s) 108, 319
BspACI CCGC 3 cut(s) 202, 206, 212
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 417
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 1 cut(s) 103
BsrI ACTGG 3 cut(s) 352, 401, 470
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 2 cut(s) 108, 319
BssNI GRCGYC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 2 cut(s) 184, 456
Bst6I CTCTTC 2 cut(s) 348, 486
BstACI GRCGYC 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 173
BstKTI GATC 2 cut(s) 111, 322
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 108, 319
BstMCI CGRYCG 1 cut(s) 206
BstMWI GCNNNNNNNGC 2 cut(s) 208, 211
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 2 cut(s) 302, 438
BstSLI GKGCMC 2 cut(s) 255, 439
BstV1I GCAGC 2 cut(s) 41, 195
BstV2I GAAGAC 1 cut(s) 236
BstZI CGGCCG 1 cut(s) 203
BsuRI GGCC 1 cut(s) 205
BtrI CACGTC 1 cut(s) 434
BtsIMutI CAGTG 1 cut(s) 345
BveI ACCTGC 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 364
CciNI GCGGCCGC 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 507
CseI GACGC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 133
CviAII CATG 2 cut(s) 155, 517
CviJI RGCY 3 cut(s) 5, 78, 205
CviKI_1 RGCY 3 cut(s) 5, 78, 205
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 173
DpnI GATC 2 cut(s) 110, 321
DpnII GATC 2 cut(s) 108, 319
EaeI YGGCCR 1 cut(s) 203
EagI CGGCCG 1 cut(s) 203
Eam1104I CTCTTC 2 cut(s) 348, 486
EarI CTCTTC 2 cut(s) 348, 486
EclXI CGGCCG 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 507
Eco52I CGGCCG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 302
FaeI CATG 2 cut(s) 158, 520
FaiI YATR 5 cut(s) 82, 156, 390, 392, 518
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 2 cut(s) 154, 516
FauNDI CATATG 1 cut(s) 390
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 5 cut(s) 55, 203, 206, 209, 212
Fsp4HI GCNGC 5 cut(s) 55, 203, 206, 209, 212
FspBI CTAG 3 cut(s) 231, 240, 449
GluI GCNGC 5 cut(s) 55, 203, 206, 209, 212
HaeIII GGCC 1 cut(s) 205
HapII CCGG 1 cut(s) 440
HgaI GACGC 1 cut(s) 323
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 2 cut(s) 158, 520
HinfI GANTC 2 cut(s) 161, 258
HpaII CCGG 1 cut(s) 440
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 3 cut(s) 187, 449, 459
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 3 cut(s) 435, 504, 507
HpyAV CCTTC 4 cut(s) 59, 237, 301, 429
HpyCH4III ACNGT 2 cut(s) 184, 456
HpyCH4IV ACGT 3 cut(s) 279, 327, 433
HpyCH4V TGCA 2 cut(s) 41, 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 211
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 3 cut(s) 279, 327, 433
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 2 cut(s) 158, 520
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 2 cut(s) 108, 319
LpnPI CCDG 8 cut(s) 268, 289, 316, 333, 382, 453, 477, 483
Lsp1109I GCAGC 2 cut(s) 41, 195
LweI GCATC 3 cut(s) 28, 126, 253
MaeI CTAG 3 cut(s) 231, 240, 449
MaeII ACGT 3 cut(s) 279, 327, 433
MaeIII GTNAC 1 cut(s) 442
MalI GATC 2 cut(s) 110, 321
MboI GATC 2 cut(s) 108, 319
MboII GAAGA 5 cut(s) 236, 365, 493, 496, 503
MhlI GDGCHC 2 cut(s) 255, 439
MluCI AATT 1 cut(s) 523
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 7 cut(s) 55, 142, 168, 180, 183, 375, 487
MroXI GAANNNNTTC 3 cut(s) 69, 298, 495
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 2 cut(s) 304, 440
MvaI CCWGG 1 cut(s) 304
MwoI GCNNNNNNNGC 2 cut(s) 208, 211
NciI CCSGG 1 cut(s) 440
NdeI CATATG 1 cut(s) 390
NdeII GATC 2 cut(s) 108, 319
NlaIII CATG 2 cut(s) 158, 520
NlaIV GGNNCC 1 cut(s) 417
NotI GCGGCCGC 1 cut(s) 203
PdmI GAANNNNTTC 3 cut(s) 69, 298, 495
PfeI GAWTC 1 cut(s) 161
PfoI TCCNGGA 1 cut(s) 302
PkrI GCNGC 5 cut(s) 56, 204, 207, 210, 213
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 1 cut(s) 507
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SatI GCNGC 5 cut(s) 55, 203, 206, 209, 212
Sau3AI GATC 2 cut(s) 108, 319
Sau96I GGNCC 1 cut(s) 507
SchI GAGTC 1 cut(s) 267
ScrFI CCNGG 2 cut(s) 304, 440
SduI GDGCHC 2 cut(s) 255, 439
SfaNI GCATC 3 cut(s) 28, 126, 253
SinI GGWCC 1 cut(s) 507
Sse9I AATT 1 cut(s) 523
SsiI CCGC 3 cut(s) 202, 206, 212
SspI AATATT 1 cut(s) 220
SspMI CTAG 3 cut(s) 231, 240, 449
StyD4I CCNGG 2 cut(s) 302, 438
TaaI ACNGT 2 cut(s) 184, 456
TaiI ACGT 3 cut(s) 282, 330, 436
TaqI TCGA 3 cut(s) 45, 261, 499
TasI AATT 1 cut(s) 523
TatI WGTACW 1 cut(s) 132
TauI GCSGC 3 cut(s) 205, 208, 214
TfiI GAWTC 1 cut(s) 161
TscAI CASTG 1 cut(s) 352
TseI GCWGC 2 cut(s) 54, 208
TspDTI ATGAA 2 cut(s) 174, 377
TspGWI ACGGA 2 cut(s) 101, 520
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 507
XbaI TCTAGA 1 cut(s) 448
XmiI GTMKAC 1 cut(s) 312
XmnI GAANNNNTTC 3 cut(s) 69, 298, 495
XspI CTAG 3 cut(s) 231, 240, 449
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.