Rh6DG323900

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000631
Physical Location & Seq
Reverse (-)
52861381 .. 52862180
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG323900.1

Sequence Viewer

Length: 507 bp
ATGGCTTTTCAATCAAAATGCACATTTCAAATCGGAGATGCAGTCGAAGTGTGCTGCAACTCGGAAGGGTTTCTTGGCTCATATTGGGAAGCAACCATAGTCGCAAATATGGGTACCAACTACTTGGTTGAGTACAAGCATTTTGTGGAGGAGCACGATGAATCTACACCTCTGAGAGAGACTGTCAAGGTGAAAGAAGTGCGGCCTCTACCACCTAATATCGTGCCTTCTAGGTATTCTAGTCTTAAAGGGCAGAGGGTCGATGCTTTTCTCAACGACGTTTGGTGGGTTGGAACTATTTCCAGGAAGATAGACTCTGATTATTACGTTGTTTTCTTTGAAAACACTGGGGAAGAGATTGCTTGCCCACTTTCAAAGTTGAGGTTTCATATGAACTGGGTCAATGAGCAGTGGGTTCCCTCCATGAAAAAGCGTGCCCCAGTTTCTTCGAAGAGGTTCGCACCGTATTCTTTGAAGGGGAGGCGTGAACAACTCGCGGCACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

168

Amino Acids

19.36

Weight (kDa)

7.65

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 12 - 72 2.2e-19 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 113
AccII CGCG 1 cut(s) 497
AciI CCGC 2 cut(s) 202, 497
AfaI GTAC 2 cut(s) 115, 134
AgsI TTSAA 5 cut(s) 11, 29, 341, 375, 475
AjnI CCWGG 1 cut(s) 302
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 173
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 54
Asp700I GAANNNNTTC 3 cut(s) 69, 298, 455
Asp718I GGTACC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 202
AsuII TTCGAA 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 439
BanI GGYRCC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 2 cut(s) 231, 240
BisI GCNGC 3 cut(s) 55, 203, 498
BlsI GCNGC 3 cut(s) 56, 204, 499
Bme1390I CCNGG 1 cut(s) 304
BmiI GGNNCC 2 cut(s) 115, 417
BmrFI CCNGG 1 cut(s) 304
BmrI ACTGGG 3 cut(s) 357, 406, 434
BmsI GCATC 2 cut(s) 28, 253
BmuI ACTGGG 3 cut(s) 357, 406, 434
Bpu14I TTCGAA 1 cut(s) 449
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bse1I ACTGG 3 cut(s) 352, 401, 440
BseBI CCWGG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 3 cut(s) 352, 401, 440
BseRI GAGGAG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 497
BshFI GGCC 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 205
Bsp119I TTCGAA 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 156, 439
BspACI CCGC 2 cut(s) 202, 497
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 1 cut(s) 497
BspLI GGNNCC 2 cut(s) 115, 417
BspT104I TTCGAA 1 cut(s) 449
BspT107I GGYRCC 1 cut(s) 113
BsrI ACTGG 3 cut(s) 352, 401, 440
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 2 cut(s) 184, 465
Bst6I CTCTTC 2 cut(s) 348, 446
BstBI TTCGAA 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 364, 435
BstDEI CTNAG 1 cut(s) 173
BstFNI CGCG 1 cut(s) 497
BstMAI GTCTC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 302
BstSLI GKGCMC 1 cut(s) 439
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 1 cut(s) 41
BstXI CCANNNNNNTGG 1 cut(s) 124
BsuRI GGCC 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 416
BtsIMutI CAGTG 2 cut(s) 345, 416
Cac8I GCNNGC 2 cut(s) 364, 435
Csp6I GTAC 2 cut(s) 114, 133
CviAII CATG 1 cut(s) 424
CviJI RGCY 3 cut(s) 5, 78, 205
CviKI_1 RGCY 3 cut(s) 5, 78, 205
CviQI GTAC 2 cut(s) 114, 133
DdeI CTNAG 1 cut(s) 173
Eam1104I CTCTTC 2 cut(s) 348, 446
EarI CTCTTC 2 cut(s) 348, 446
EcoRII CCWGG 1 cut(s) 302
FaeI CATG 1 cut(s) 427
FaiI YATR 6 cut(s) 82, 98, 110, 390, 392, 425
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 1 cut(s) 423
FauNDI CATATG 1 cut(s) 390
Fnu4HI GCNGC 3 cut(s) 55, 203, 498
Fsp4HI GCNGC 3 cut(s) 55, 203, 498
FspBI CTAG 2 cut(s) 231, 240
GluI GCNGC 3 cut(s) 55, 203, 498
HaeIII GGCC 1 cut(s) 205
Hin1II CATG 1 cut(s) 427
HinfI GANTC 2 cut(s) 161, 314
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 488
Hpy188I TCNGA 4 cut(s) 35, 64, 174, 319
Hpy8I GTNNAC 1 cut(s) 488
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 3 cut(s) 59, 237, 469
HpyCH4III ACNGT 2 cut(s) 184, 465
HpyCH4IV ACGT 2 cut(s) 279, 327
HpyCH4V TGCA 3 cut(s) 21, 41, 57
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 2 cut(s) 279, 327
Hsp92II CATG 1 cut(s) 427
KpnI GGTACC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 5 cut(s) 289, 316, 333, 382, 453
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 2 cut(s) 28, 253
MaeI CTAG 2 cut(s) 231, 240
MaeII ACGT 2 cut(s) 279, 327
MboII GAAGA 4 cut(s) 319, 365, 438, 463
MhlI GDGCHC 2 cut(s) 156, 439
MlyI GAGTC 1 cut(s) 308
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 8 cut(s) 142, 180, 216, 249, 375, 430, 447, 474
MroXI GAANNNNTTC 3 cut(s) 69, 298, 455
MseI TTAA 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 304
MvaI CCWGG 1 cut(s) 304
MvnI CGCG 1 cut(s) 497
NdeI CATATG 1 cut(s) 390
NlaIII CATG 1 cut(s) 427
NlaIV GGNNCC 2 cut(s) 115, 417
NspV TTCGAA 1 cut(s) 449
PdmI GAANNNNTTC 3 cut(s) 69, 298, 455
PfeI GAWTC 1 cut(s) 161
PfoI TCCNGGA 1 cut(s) 302
PkrI GCNGC 3 cut(s) 56, 204, 499
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 2 cut(s) 115, 417
RsaI GTAC 2 cut(s) 115, 134
RsaNI GTAC 2 cut(s) 114, 133
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 3 cut(s) 55, 203, 498
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 304
SduI GDGCHC 2 cut(s) 156, 439
SetI ASST 8 cut(s) 172, 192, 217, 236, 282, 330, 386, 458
SfaNI GCATC 2 cut(s) 28, 253
SfuI TTCGAA 1 cut(s) 449
SsiI CCGC 2 cut(s) 202, 497
SspMI CTAG 2 cut(s) 231, 240
StyD4I CCNGG 1 cut(s) 302
TaaI ACNGT 2 cut(s) 184, 465
TaiI ACGT 2 cut(s) 282, 330
TaqI TCGA 3 cut(s) 45, 261, 449
TatI WGTACW 1 cut(s) 132
TauI GCSGC 2 cut(s) 205, 500
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 2 cut(s) 352, 416
TseI GCWGC 1 cut(s) 54
TspDTI ATGAA 4 cut(s) 174, 377, 407, 440
TspRI CASTG 2 cut(s) 352, 416
XmnI GAANNNNTTC 3 cut(s) 69, 298, 455
XspI CTAG 2 cut(s) 231, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.