RLG00000035862

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000631
Physical Location & Seq
Reverse (-)
72742673 .. 72743018
346 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035862

Sequence Viewer

Length: 312 bp
ATGGGCACCAACTATGTGATCCAGTACAACAACCTGGTCGAGGAGTTCAATGACTCTATGCGGCTGAAAGAGACCGTCAAGGCAGCGGAGGTCCGGCTGAGCCGCCGGAAATCGATCAATGCTTACGATCTTGATGGGTGGTGGGTCGGTACGATTTTGTTAGAGAAAAATAGGTCTGGGCATCAGTCCGTGTTTTTCGAGACTACTGGGCAAGAGCTTGATTACCCAGTTTTGAAGCTGAGGGTTCATCAAGATTGGCGCAATGGGAAATGGGTGTCGTCCAAGAAGAGCAAGAGGAATGCTGTACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

104

Amino Acids

12.13

Weight (kDa)

9.79

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AciI CCGC 3 cut(s) 61, 86, 103
AclWI GGATC 1 cut(s) 13
AfaI GTAC 3 cut(s) 26, 151, 306
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 2 cut(s) 49, 235
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 2 cut(s) 217, 238
AluI AGCT 2 cut(s) 217, 238
Alw26I GTCTC 2 cut(s) 65, 194
AlwI GGATC 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 91
AvaII GGWCC 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 35
BcoDI GTCTC 2 cut(s) 65, 194
BisI GCNGC 3 cut(s) 62, 84, 103
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 3 cut(s) 63, 85, 104
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 35
BmrI ACTGGG 2 cut(s) 216, 221
BmsI GCATC 1 cut(s) 190
BmuI ACTGGG 2 cut(s) 216, 221
Bpu10I CCTNAGC 1 cut(s) 239
Bpu1102I GCTNAGC 1 cut(s) 98
Bsa29I ATCGAT 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 3 cut(s) 22, 211, 227
Bse3DI GCAATG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 35
BseCI ATCGAT 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 2 cut(s) 89, 230
BseNI ACTGG 3 cut(s) 22, 211, 227
BseRI GAGGAG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 113
BsiSI CCGG 2 cut(s) 94, 106
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 65, 194
BsmI GAATGC 1 cut(s) 304
Bso31I GGTCTC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 18, 114, 127
Bsp1720I GCTNAGC 1 cut(s) 98
BspACI CCGC 3 cut(s) 61, 86, 103
BspCNI CTCAG 2 cut(s) 90, 231
BspDI ATCGAT 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 268
BsrI ACTGG 3 cut(s) 22, 211, 227
BssMI GATC 3 cut(s) 18, 114, 127
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 98, 239
BstENI CCTNNNNNAGG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 3 cut(s) 21, 117, 130
BstMAI GTCTC 2 cut(s) 65, 194
BstMBI GATC 3 cut(s) 18, 114, 127
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 95
Bsu15I ATCGAT 1 cut(s) 113
BsuTUI ATCGAT 1 cut(s) 113
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 113
CsiI ACCWGGT 1 cut(s) 33
Csp6I GTAC 3 cut(s) 25, 150, 305
CviJI RGCY 5 cut(s) 64, 97, 102, 217, 238
CviKI_1 RGCY 5 cut(s) 64, 97, 102, 217, 238
CviQI GTAC 3 cut(s) 25, 150, 305
DdeI CTNAG 2 cut(s) 98, 239
DpnI GATC 3 cut(s) 20, 116, 129
DpnII GATC 3 cut(s) 18, 114, 127
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 33
FaiI YATR 2 cut(s) 15, 59
Fnu4HI GCNGC 3 cut(s) 62, 84, 103
Fsp4HI GCNGC 3 cut(s) 62, 84, 103
GlaI GCGC 1 cut(s) 260
GluI GCNGC 3 cut(s) 62, 84, 103
HapII CCGG 2 cut(s) 94, 106
HhaI GCGC 1 cut(s) 261
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HinfI GANTC 1 cut(s) 53
HpaII CCGG 2 cut(s) 94, 106
Hpy188III TCNNGA 3 cut(s) 131, 199, 251
HpyCH4III ACNGT 1 cut(s) 76
HpyF3I CTNAG 2 cut(s) 98, 239
HspAI GCGC 1 cut(s) 259
Kzo9I GATC 3 cut(s) 18, 114, 127
LguI GCTCTTC 1 cut(s) 281
LpnPI CCDG 8 cut(s) 20, 35, 47, 107, 119, 162, 192, 240
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 1 cut(s) 190
MabI ACCWGGT 1 cut(s) 33
MalI GATC 3 cut(s) 20, 116, 129
MboI GATC 3 cut(s) 18, 114, 127
MboII GAAGA 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 4 cut(s) 34, 82, 234, 288
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 2 cut(s) 94, 106
MspR9I CCNGG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 1 cut(s) 35
NdeII GATC 3 cut(s) 18, 114, 127
NlaIV GGNNCC 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 281
PctI GAATGC 1 cut(s) 304
PkrI GCNGC 3 cut(s) 63, 85, 104
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 91
RsaI GTAC 3 cut(s) 26, 151, 306
RsaNI GTAC 3 cut(s) 25, 150, 305
SapI GCTCTTC 1 cut(s) 281
SatI GCNGC 3 cut(s) 62, 84, 103
Sau3AI GATC 3 cut(s) 18, 114, 127
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 36, 93, 176, 219, 240
SexAI ACCWGGT 1 cut(s) 33
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 1 cut(s) 91
SsiI CCGC 3 cut(s) 61, 86, 103
StyD4I CCNGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 3 cut(s) 39, 113, 198
TatI WGTACW 1 cut(s) 24
TauI GCSGC 2 cut(s) 64, 105
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 236
TspGWI ACGGA 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 91
XagI CCTNNNNNAGG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.