Rh6BG413200

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000631
Physical Location & Seq
Forward (+)
63824732 .. 63827023
2292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG413200.1

Sequence Viewer

Length: 504 bp
ATGAAATATGTTGAACTGTCAATTCTGTCCTCCTTCTTTTCTAAAAATTACATCTGCAAATTCGTTCTCCTCCACTCCTTCCTCCAAAAATTACATCTACAAATTCGTTCTCCTCTATCTGTAAATTCTCAGGCGTTTTCTGCGAATGCCCAGATTTTGGTGTCGTACTACGAGGCCACCGTCGTCGCAAACATGGGCACCAACTATGTGATCCAGTACAACAAGGAGTTCAACGACTCTGTGCCGCTCAAAGAGATTGTCAAGGCGGCGGAGGTCCGGTCGCGGCCGCCGGAAATCATGGAGGCTAATGCTGTGTTTCATGTGGGTAATAGGATCGATGCTTACGATCTTGATGAGTGGTGGGTCGGTACGATTTTGTCCAACGAAAATGGGTCTGGGCATCAGTCCGTGTTTTTCGAGCAGTGTCGTCATAAAGTTGATAGAGCAGTGTCGTCTCCCAGCAGCATCGAGCATCGTCTCCAGATTCTAAAGGTAAAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

167

Amino Acids

19.05

Weight (kDa)

7.81

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 48 - 97 6.8e-06 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 157
AccBSI CCGCTC 1 cut(s) 247
AccII CGCG 1 cut(s) 283
AciI CCGC 5 cut(s) 245, 266, 269, 283, 287
AclWI GGATC 2 cut(s) 205, 341
AcoI YGGCCR 1 cut(s) 284
AcsI RAATTY 3 cut(s) 59, 102, 124
AfaI GTAC 3 cut(s) 167, 218, 370
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 2 cut(s) 14, 232
Alw26I GTCTC 2 cut(s) 459, 482
AlwI GGATC 2 cut(s) 205, 341
AoxI GGCC 2 cut(s) 174, 284
ApeKI GCWGC 1 cut(s) 462
ApoI RAATTY 3 cut(s) 59, 102, 124
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
AspS9I GGNCC 1 cut(s) 274
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 200
BanI GGYRCC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 474
BcoDI GTCTC 2 cut(s) 459, 482
BisI GCNGC 5 cut(s) 245, 267, 284, 287, 463
BlsI GCNGC 5 cut(s) 246, 268, 285, 288, 464
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 4 cut(s) 328, 409, 474, 481
BpmI CTGGAG 1 cut(s) 464
Bsa29I ATCGAT 1 cut(s) 336
BsaWI WCCGGW 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 214
BseCI ATCGAT 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 2 cut(s) 59, 102
BseSI GKGCMC 1 cut(s) 200
BseX3I CGGCCG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 474
BseYI CCCAGC 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 283
Bsh1285I CGRYCG 2 cut(s) 281, 287
BshFI GGCC 2 cut(s) 176, 286
BshNI GGYRCC 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 336
BsiEI CGRYCG 2 cut(s) 281, 287
BsiSI CCGG 2 cut(s) 277, 290
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 2 cut(s) 459, 482
BsmBI CGTCTC 2 cut(s) 459, 482
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 2 cut(s) 176, 286
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 3 cut(s) 210, 333, 346
BspACI CCGC 5 cut(s) 245, 266, 269, 283, 287
BspANI GGCC 2 cut(s) 176, 286
BspCNI CTCAG 1 cut(s) 142
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 2 cut(s) 205, 341
BspT107I GGYRCC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 247
BsrI ACTGG 1 cut(s) 214
BssMI GATC 3 cut(s) 210, 333, 346
Bst4CI ACNGT 2 cut(s) 18, 181
BstDEI CTNAG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 283
BstKTI GATC 3 cut(s) 213, 336, 349
BstMAI GTCTC 2 cut(s) 459, 482
BstMBI GATC 3 cut(s) 210, 333, 346
BstMCI CGRYCG 2 cut(s) 281, 287
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 200
BstUI CGCG 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 474
BstZI CGGCCG 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 2 cut(s) 176, 286
BsuTUI ATCGAT 1 cut(s) 336
BtsI GCAGTG 2 cut(s) 428, 453
BtsIMutI CAGTG 2 cut(s) 428, 453
CciNI GCGGCCGC 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 274
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 3 cut(s) 166, 217, 369
CviAII CATG 3 cut(s) 193, 298, 320
CviJI RGCY 3 cut(s) 176, 286, 305
CviKI_1 RGCY 3 cut(s) 176, 286, 305
CviQI GTAC 3 cut(s) 166, 217, 369
DdeI CTNAG 1 cut(s) 129
DpnI GATC 3 cut(s) 212, 335, 348
DpnII GATC 3 cut(s) 210, 333, 346
EaeI YGGCCR 1 cut(s) 284
EagI CGGCCG 1 cut(s) 284
EciI GGCGGA 1 cut(s) 284
EclXI CGGCCG 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 274
Eco52I CGGCCG 1 cut(s) 284
Esp3I CGTCTC 2 cut(s) 459, 482
FaeI CATG 3 cut(s) 196, 301, 323
FaiI YATR 6 cut(s) 9, 194, 207, 299, 321, 432
FatI CATG 3 cut(s) 192, 297, 319
Fnu4HI GCNGC 5 cut(s) 245, 267, 284, 287, 463
Fsp4HI GCNGC 5 cut(s) 245, 267, 284, 287, 463
GluI GCNGC 5 cut(s) 245, 267, 284, 287, 463
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 2 cut(s) 176, 286
HapII CCGG 2 cut(s) 277, 290
Hin1II CATG 3 cut(s) 196, 301, 323
HinfI GANTC 2 cut(s) 236, 484
HpaII CCGG 2 cut(s) 277, 290
Hpy188III TCNNGA 2 cut(s) 350, 481
Hpy99I CGWCG 2 cut(s) 185, 188
HpyAV CCTTC 2 cut(s) 43, 88
HpyCH4III ACNGT 2 cut(s) 18, 181
HpyCH4V TGCA 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 3 cut(s) 196, 301, 323
Kzo9I GATC 3 cut(s) 210, 333, 346
LpnPI CCDG 8 cut(s) 116, 164, 227, 290, 303, 381, 472, 494
Lsp1109I GCAGC 1 cut(s) 474
LweI GCATC 4 cut(s) 328, 409, 474, 481
MalI GATC 3 cut(s) 212, 335, 348
MbiI CCGCTC 1 cut(s) 247
MboI GATC 3 cut(s) 210, 333, 346
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 6 cut(s) 21, 46, 59, 89, 102, 124
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 7 cut(s) 40, 80, 92, 123, 166, 265, 295
MseI TTAA 1 cut(s) 502
MspI CCGG 2 cut(s) 277, 290
Mva1269I GAATGC 1 cut(s) 151
MvnI CGCG 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 3 cut(s) 210, 333, 346
NlaIII CATG 3 cut(s) 196, 301, 323
NlaIV GGNNCC 1 cut(s) 199
NotI GCGGCCGC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 342
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 484
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 5 cut(s) 246, 268, 285, 288, 464
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PspFI CCCAGC 1 cut(s) 458
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 274
RsaI GTAC 3 cut(s) 167, 218, 370
RsaNI GTAC 3 cut(s) 166, 217, 369
SaqAI TTAA 1 cut(s) 502
SatI GCNGC 5 cut(s) 245, 267, 284, 287, 463
Sau3AI GATC 3 cut(s) 210, 333, 346
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 1 cut(s) 230
SduI GDGCHC 1 cut(s) 200
SetI ASST 3 cut(s) 276, 495, 502
SfaNI GCATC 4 cut(s) 328, 409, 474, 481
SinI GGWCC 1 cut(s) 274
Sse9I AATT 6 cut(s) 21, 46, 59, 89, 102, 124
SsiI CCGC 5 cut(s) 245, 266, 269, 283, 287
TaaI ACNGT 2 cut(s) 18, 181
TaqI TCGA 3 cut(s) 336, 417, 468
TasI AATT 6 cut(s) 21, 46, 59, 89, 102, 124
TatI WGTACW 1 cut(s) 216
TauI GCSGC 4 cut(s) 247, 269, 286, 289
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 1 cut(s) 502
Tru9I TTAA 1 cut(s) 502
TscAI CASTG 2 cut(s) 428, 453
TseI GCWGC 1 cut(s) 462
TspDTI ATGAA 2 cut(s) 17, 308
TspGWI ACGGA 1 cut(s) 397
TspRI CASTG 2 cut(s) 428, 453
Van91I CCANNNNNTGG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 274
XapI RAATTY 3 cut(s) 59, 102, 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.