Rh1AG103800

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000631
Physical Location & Seq
Reverse (-)
18130021 .. 18130912
892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG103800.1

Sequence Viewer

Length: 546 bp
ATGTTGGGCTACCAATTTTGTCCTCCTCCTTTTCTAAAAATTACATCTGCAAATTCGTTCTCTTCCTTGACTCCTTCCTCTTTGCCGTTAAAAATACAAGGAAACAAATCGAGAGGGTCGAAAACCCAAAATTCTCAGGCGTTTTCTGCGAATGCCCAGATTTTGGGTTCGTACTATGAGGCCACCGTCGTCGCAAACATGGGCACCAACTATGTGATCCAGTACAACAACCTGGTCGACGAGTTCAACGACTTTGTGTCGCTCAAAGAGACTGTCAAGGCGGTGGAGGTCCAGCCACACCCGCCGAAAATCATGGAGGCTAATGCTGTGTTTCATGTGGGTGATAGGATTGATGCTTACGATCTTGATGGGTGGTGGGTCGATACGAATTTGTCGGAGGAAAATGGGTCTAGGCATCAGTTCGTGTTTTTCAAGACTATTGGGCAAGAGCTTGATTACCCAGTTTTGAAGCTGAGAGTTCATCAAGATTGGCACAATGGGAAATGGGTGTCGTCCAAGAAGACCAAGAGGAATGTTGTGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

181

Amino Acids

20.52

Weight (kDa)

8.59

Isoelectric Point (pI)

26.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 163
AccI GTMKAC 1 cut(s) 237
AciI CCGC 2 cut(s) 281, 302
AclWI GGATC 1 cut(s) 211
AcsI RAATTY 3 cut(s) 52, 130, 388
AfaI GTAC 2 cut(s) 173, 224
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 3 cut(s) 247, 433, 469
AhdI GACNNNNNGTC 1 cut(s) 256
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 2 cut(s) 451, 472
AluI AGCT 2 cut(s) 451, 472
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 211
AoxI GGCC 1 cut(s) 180
ApoI RAATTY 3 cut(s) 52, 130, 388
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 353
AvaII GGWCC 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 206
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 527
BccI CCATC 1 cut(s) 362
BceAI ACGGC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 411
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 289
BmeRI GACNNNNNGTC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 233
BmrI ACTGGG 1 cut(s) 455
BmsI GCATC 2 cut(s) 343, 424
BmuI ACTGGG 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 527
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 220, 461
BseBI CCWGG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 2 cut(s) 149, 464
BseNI ACTGG 2 cut(s) 220, 461
BseRI GAGGAG 1 cut(s) 15
BseSI GKGCMC 1 cut(s) 206
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 263
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 2 cut(s) 216, 361
BspACI CCGC 2 cut(s) 281, 302
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 148, 465
BspLI GGNNCC 1 cut(s) 205
BspPI GGATC 1 cut(s) 211
BspT107I GGYRCC 1 cut(s) 203
BsrI ACTGG 2 cut(s) 220, 461
BssMI GATC 2 cut(s) 216, 361
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 2 cut(s) 187, 274
Bst6I CTCTTC 1 cut(s) 67
BstDEI CTNAG 2 cut(s) 135, 473
BstKTI GATC 2 cut(s) 219, 364
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 2 cut(s) 216, 361
BstMWI GCNNNNNNNGC 2 cut(s) 146, 301
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 527
BsuRI GGCC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 289
CsiI ACCWGGT 1 cut(s) 231
Csp6I GTAC 2 cut(s) 172, 223
CviAII CATG 3 cut(s) 199, 313, 335
CviJI RGCY 6 cut(s) 9, 182, 295, 320, 451, 472
CviKI_1 RGCY 6 cut(s) 9, 182, 295, 320, 451, 472
CviQI GTAC 2 cut(s) 172, 223
DdeI CTNAG 2 cut(s) 135, 473
DpnI GATC 2 cut(s) 218, 363
DpnII GATC 2 cut(s) 216, 361
DriI GACNNNNNGTC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 67
Eam1105I GACNNNNNGTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 231
FaeI CATG 3 cut(s) 202, 316, 338
FaiI YATR 5 cut(s) 177, 200, 213, 314, 336
FatI CATG 3 cut(s) 198, 312, 334
FauI CCCGC 1 cut(s) 309
FblI GTMKAC 1 cut(s) 237
FspBI CTAG 1 cut(s) 411
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 3 cut(s) 202, 316, 338
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 1 cut(s) 70
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 4 cut(s) 111, 365, 433, 485
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 3 cut(s) 191, 194, 242
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 2 cut(s) 187, 274
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 301
HpyF3I CTNAG 2 cut(s) 135, 473
Hsp92II CATG 3 cut(s) 202, 316, 338
Kzo9I GATC 2 cut(s) 216, 361
LpnPI CCDG 7 cut(s) 122, 170, 218, 233, 245, 305, 474
LweI GCATC 2 cut(s) 343, 424
MabI ACCWGGT 1 cut(s) 231
MaeI CTAG 1 cut(s) 411
MalI GATC 2 cut(s) 218, 363
MboI GATC 2 cut(s) 216, 361
MboII GAAGA 2 cut(s) 54, 532
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 5 cut(s) 14, 39, 52, 130, 388
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 9 cut(s) 33, 36, 88, 107, 172, 280, 310, 391, 522
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 146, 301
NdeII GATC 2 cut(s) 216, 361
NlaIII CATG 3 cut(s) 202, 316, 338
NlaIV GGNNCC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 2 cut(s) 116, 246
PctI GAATGC 1 cut(s) 157
PflMI CCANNNNNTGG 1 cut(s) 163
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 289
RsaI GTAC 2 cut(s) 173, 224
RsaNI GTAC 2 cut(s) 172, 223
RseI CAYNNNNRTG 1 cut(s) 339
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 89
Sau3AI GATC 2 cut(s) 216, 361
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 1 cut(s) 206
SetI ASST 4 cut(s) 234, 291, 453, 474
SexAI ACCWGGT 1 cut(s) 231
SfaNI GCATC 2 cut(s) 343, 424
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 339
Sse9I AATT 5 cut(s) 14, 39, 52, 130, 388
SsiI CCGC 2 cut(s) 281, 302
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 187, 274
TaqI TCGA 4 cut(s) 110, 119, 237, 381
TasI AATT 5 cut(s) 14, 39, 52, 130, 388
TatI WGTACW 1 cut(s) 222
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 323, 470
Van91I CCANNNNNTGG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 3 cut(s) 52, 130, 388
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.