Rroxscaffold_7G00176980

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000631
Physical Location & Seq
Forward (+)
16578983 .. 16579555
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176980.1

Sequence Viewer

Length: 573 bp
ATGAATGTAATTTGCTCCAAATGTACCTTTCAAATAGGGGATGAAGTGGAAGTGTGCTGCAATTCGGAAGGATTTCTTGGCTCATATTGGAAAGCAATCATAGTCGCAAATATGGGTACGAACTACTTGGTTGAGTACAAGGATTTTGTGGACGAAGATAATGAATCTACACCTTTACAAGAGATTGTCATAGCGAAAGATGTCCGGCCTATACCACCTGTCATTGTGCCATCTAAATATTCTAGTCTTAAAGGGTATAGGGTCGATGCATTGATCAATGACGGTTGGTGGGTTGGAACTATTTCTAGGAGGAAAGACCCCGACCACTACTTCGTTTTCTTTGAAACCACTGGAATAGAGACTCTTTACCCGCTTTCAAAGTTGAGATTTCATATGGAGTGGCTCAATGGGGTCTGGGTTCCTTCCAACAAAAGGTGCACCCCAATTTCTTCGAAAAAGGGGTTCGCACCAACTTCTTCGAAGAAACCGAATAAAATGGGTGCACCAGCTTTTTCAAAGAAGGAGTTCACACCAGTTTCTTTTGAGGAGAGGAGCGAACTCATGGAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

190

Amino Acids

21.62

Weight (kDa)

6.17

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 13 - 73 4.4e-19 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 371
AfaI GTAC 3 cut(s) 25, 118, 137
AfiI CCNNNNNNNGG 1 cut(s) 432
AgsI TTSAA 4 cut(s) 32, 344, 378, 516
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 1 cut(s) 509
AluI AGCT 1 cut(s) 509
Alw21I GWGCWC 2 cut(s) 440, 505
Alw26I GTCTC 1 cut(s) 353
Alw44I GTGCAC 2 cut(s) 436, 501
AoxI GGCC 1 cut(s) 206
ApaLI GTGCAC 2 cut(s) 436, 501
ApeKI GCWGC 1 cut(s) 57
ArsI GACNNNNNNTTYG 2 cut(s) 314, 346
Asp700I GAANNNNTTC 3 cut(s) 72, 301, 524
AsuII TTCGAA 2 cut(s) 452, 479
BaeGI GKGCMC 2 cut(s) 440, 505
Bbv12I GWGCWC 2 cut(s) 440, 505
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 238
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 2 cut(s) 243, 306
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 420
BmsI GCATC 1 cut(s) 256
Bpu14I TTCGAA 2 cut(s) 452, 479
Bsc4I CCNNNNNNNGG 1 cut(s) 432
Bse1I ACTGG 2 cut(s) 355, 533
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 432
BseNI ACTGG 2 cut(s) 355, 533
BseRI GAGGAG 2 cut(s) 560, 565
BseSI GKGCMC 2 cut(s) 440, 505
BseXI GCAGC 1 cut(s) 44
BshFI GGCC 1 cut(s) 208
BsiHKAI GWGCWC 2 cut(s) 440, 505
BsiSI CCGG 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 432
BsmAI GTCTC 1 cut(s) 353
BsnI GGCC 1 cut(s) 208
Bsp119I TTCGAA 2 cut(s) 452, 479
Bsp1286I GDGCHC 2 cut(s) 440, 505
Bsp143I GATC 1 cut(s) 273
BspACI CCGC 1 cut(s) 371
BspANI GGCC 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 420
BspT104I TTCGAA 2 cut(s) 452, 479
BsrI ACTGG 2 cut(s) 355, 533
BssMI GATC 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 284
BstBI TTCGAA 2 cut(s) 452, 479
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 1 cut(s) 276
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 1 cut(s) 273
BstSLI GKGCMC 2 cut(s) 440, 505
BstV1I GCAGC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 348
Csp6I GTAC 3 cut(s) 24, 117, 136
CviAII CATG 1 cut(s) 562
CviJI RGCY 4 cut(s) 81, 208, 403, 509
CviKI_1 RGCY 4 cut(s) 81, 208, 403, 509
CviQI GTAC 3 cut(s) 24, 117, 136
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
EcoT22I ATGCAT 1 cut(s) 271
FaeI CATG 1 cut(s) 565
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FatI CATG 1 cut(s) 561
FauI CCCGC 1 cut(s) 378
FauNDI CATATG 1 cut(s) 393
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 2 cut(s) 243, 306
GluI GCNGC 1 cut(s) 58
HaeIII GGCC 1 cut(s) 208
HapII CCGG 1 cut(s) 205
Hin1II CATG 1 cut(s) 565
HinfI GANTC 2 cut(s) 164, 361
HpaII CCGG 1 cut(s) 205
Hpy166II GTNNAC 4 cut(s) 151, 438, 503, 528
Hpy188I TCNGA 1 cut(s) 67
Hpy8I GTNNAC 4 cut(s) 151, 438, 503, 528
HpyAV CCTTC 3 cut(s) 62, 432, 514
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4V TGCA 4 cut(s) 60, 269, 438, 503
Hsp92II CATG 1 cut(s) 565
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 1 cut(s) 273
LmnI GCTCC 2 cut(s) 20, 552
LpnPI CCDG 6 cut(s) 218, 231, 336, 400, 519, 546
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 1 cut(s) 256
MaeI CTAG 2 cut(s) 243, 306
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 4 cut(s) 167, 441, 468, 493
MhlI GDGCHC 2 cut(s) 440, 505
MluCI AATT 4 cut(s) 9, 61, 444, 566
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 2 cut(s) 274, 450
MnlI CCTC 3 cut(s) 303, 538, 543
Mph1103I ATGCAT 1 cut(s) 271
MroXI GAANNNNTTC 3 cut(s) 72, 301, 524
MseI TTAA 1 cut(s) 249
MspI CCGG 1 cut(s) 205
NdeI CATATG 1 cut(s) 393
NdeII GATC 1 cut(s) 273
NlaIII CATG 1 cut(s) 565
NlaIV GGNNCC 1 cut(s) 420
NsiI ATGCAT 1 cut(s) 271
NspV TTCGAA 2 cut(s) 452, 479
PcsI WCGNNNNNNNCGW 1 cut(s) 485
PdmI GAANNNNTTC 3 cut(s) 72, 301, 524
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 59
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 420
RsaI GTAC 3 cut(s) 25, 118, 137
RsaNI GTAC 3 cut(s) 24, 117, 136
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 273
SchI GAGTC 1 cut(s) 355
SduI GDGCHC 2 cut(s) 440, 505
SetI ASST 5 cut(s) 29, 175, 220, 437, 511
SfaNI GCATC 1 cut(s) 256
SfuI TTCGAA 2 cut(s) 452, 479
Sse9I AATT 4 cut(s) 9, 61, 444, 566
SsiI CCGC 1 cut(s) 371
SspI AATATT 1 cut(s) 239
SspMI CTAG 2 cut(s) 243, 306
TaaI ACNGT 1 cut(s) 284
TaqI TCGA 3 cut(s) 264, 452, 479
TasI AATT 4 cut(s) 9, 61, 444, 566
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 355
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 4 cut(s) 17, 57, 177, 380
TspRI CASTG 1 cut(s) 355
VneI GTGCAC 2 cut(s) 436, 501
XmnI GAANNNNTTC 3 cut(s) 72, 301, 524
XspI CTAG 2 cut(s) 243, 306
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.