Rh2AG280500

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000631
Physical Location & Seq
Forward (+)
33995339 .. 33995647
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG280500.1

Sequence Viewer

Length: 309 bp
ATGTTGAGCTACCAATTTTGTCCTCCTGCTTTTCTAAAAATTACATCTGCAAATTCGTTCTCTTCCTTGACTCCTTCCTCTTTGCCATCAAAAATACATGGAAACAAATCGAGAGGGTCGAAAACCCAAAATTCTCAGGCGTTTTCTGCAAATGCCCAGATTTTGGGTTCGTACTACGAGGCCACCGTCGTCGCAAACATGGGCACCAACTATGTGATTCAGTACAACAACCTGGTCGAGGAGTTCAATTTACTCTGTGTCGCTCAAAGAGACTGTCAAGGAGGTGGAGGTCCGGCCGCGCCCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

102

Amino Acids

10.84

Weight (kDa)

8.52

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 163
AccII CGCG 1 cut(s) 299
AciI CCGC 2 cut(s) 297, 303
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 2 cut(s) 52, 130
AfaI GTAC 2 cut(s) 173, 224
AfiI CCNNNNNNNGG 2 cut(s) 163, 238
AgsI TTSAA 1 cut(s) 247
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 264
AoxI GGCC 2 cut(s) 180, 294
ApoI RAATTY 2 cut(s) 52, 130
ArsI GACNNNNNNTTYG 2 cut(s) 259, 291
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 290
AvaII GGWCC 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 206
BanI GGYRCC 1 cut(s) 203
BccI CCATC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 264
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 233
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 238
BseBI CCWGG 1 cut(s) 233
BseLI CCNNNNNNNGG 2 cut(s) 163, 238
BseMII CTCAG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 206
BseX3I CGGCCG 1 cut(s) 294
Bsh1236I CGCG 1 cut(s) 299
Bsh1285I CGRYCG 1 cut(s) 297
BshFI GGCC 2 cut(s) 182, 296
BshNI GGYRCC 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 297
BsiSI CCGG 1 cut(s) 293
BslI CCNNNNNNNGG 2 cut(s) 163, 238
BsmAI GTCTC 1 cut(s) 264
BsnI GGCC 2 cut(s) 182, 296
Bsp1286I GDGCHC 1 cut(s) 206
BspACI CCGC 2 cut(s) 297, 303
BspANI GGCC 2 cut(s) 182, 296
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 2 cut(s) 187, 275
Bst6I CTCTTC 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 236
BstFNI CGCG 1 cut(s) 299
BstHHI GCGC 1 cut(s) 301
BstMAI GTCTC 1 cut(s) 264
BstMCI CGRYCG 1 cut(s) 297
BstMWI GCNNNNNNNGC 2 cut(s) 146, 302
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 1 cut(s) 299
BstZI CGGCCG 1 cut(s) 294
BsuRI GGCC 2 cut(s) 182, 296
Cac8I GCNNGC 1 cut(s) 303
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 290
CsiI ACCWGGT 1 cut(s) 231
Csp6I GTAC 2 cut(s) 172, 223
CviAII CATG 2 cut(s) 98, 199
CviJI RGCY 3 cut(s) 9, 182, 296
CviKI_1 RGCY 3 cut(s) 9, 182, 296
CviQI GTAC 2 cut(s) 172, 223
DdeI CTNAG 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 294
EagI CGGCCG 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
EclXI CGGCCG 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 290
Eco52I CGGCCG 1 cut(s) 294
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 231
FaeI CATG 2 cut(s) 101, 202
FaiI YATR 3 cut(s) 99, 200, 213
FatI CATG 2 cut(s) 97, 198
Fnu4HI GCNGC 1 cut(s) 297
Fsp4HI GCNGC 1 cut(s) 297
GlaI GCGC 1 cut(s) 300
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 2 cut(s) 182, 296
HapII CCGG 1 cut(s) 293
HhaI GCGC 1 cut(s) 301
Hin1II CATG 2 cut(s) 101, 202
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HinfI GANTC 2 cut(s) 70, 217
HpaII CCGG 1 cut(s) 293
Hpy188III TCNNGA 1 cut(s) 111
Hpy99I CGWCG 2 cut(s) 191, 194
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 2 cut(s) 187, 275
HpyCH4V TGCA 2 cut(s) 50, 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 302
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 2 cut(s) 101, 202
HspAI GCGC 1 cut(s) 299
LpnPI CCDG 5 cut(s) 39, 122, 170, 218, 245
MabI ACCWGGT 1 cut(s) 231
MboII GAAGA 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 5 cut(s) 14, 39, 52, 130, 247
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 7 cut(s) 33, 88, 107, 172, 232, 275, 281
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 233
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 146, 302
NlaIII CATG 2 cut(s) 101, 202
NlaIV GGNNCC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 2 cut(s) 116, 183
PfeI GAWTC 1 cut(s) 217
PflMI CCANNNNNTGG 1 cut(s) 163
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 290
RsaI GTAC 2 cut(s) 173, 224
RsaNI GTAC 2 cut(s) 172, 223
SatI GCNGC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 290
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 1 cut(s) 206
SetI ASST 4 cut(s) 11, 234, 286, 292
SexAI ACCWGGT 1 cut(s) 231
SinI GGWCC 1 cut(s) 290
Sse9I AATT 5 cut(s) 14, 39, 52, 130, 247
SsiI CCGC 2 cut(s) 297, 303
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 2 cut(s) 187, 275
TaqI TCGA 3 cut(s) 110, 119, 237
TasI AATT 5 cut(s) 14, 39, 52, 130, 247
TatI WGTACW 1 cut(s) 222
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 290
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 2 cut(s) 52, 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.