Rmu_co8053086.1_g000001

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8053086.1
OG0000631
Physical Location & Seq
Reverse (-)
173 .. 529
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8053086.1_g000001.1.cds

Sequence Viewer

Length: 357 bp
atgggcagcaactatgtggttcagtacaagagcctagtggaggaatacgacgagtctgtacctttgaaagagaccgtaatggcggacgaggtccgccctatgccgccggaagttactgaggctcctgagtttcatattggtaacagggttgatgcgcacgacctcgacgggtggtgggttggtaccatttcttctgagaaaaatgtgtatggttttcacgctgtgtttttcgaaacaaccggggagaagatttcttacccactctggaatctgagagttcatcaagactggcgcggtggaaagtgggtcgtgtcttccaacaagaagaagaagaagagacttgctttgctcttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

118

Amino Acids

13.67

Weight (kDa)

6.07

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 156
Acc65I GGTACC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 182
AccII CGCG 1 cut(s) 294
AciI CCGC 4 cut(s) 83, 94, 104, 294
AdeI CACNNNGTG 1 cut(s) 223
AfaI GTAC 3 cut(s) 26, 60, 184
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 1 cut(s) 67
Alw26I GTCTC 2 cut(s) 65, 331
ApeKI GCWGC 1 cut(s) 6
Asp718I GGTACC 1 cut(s) 182
AspLEI GCGC 2 cut(s) 157, 294
AspS9I GGNCC 1 cut(s) 91
AsuC2I CCSGG 1 cut(s) 241
AsuII TTCGAA 1 cut(s) 231
AvaII GGWCC 1 cut(s) 91
BanI GGYRCC 1 cut(s) 182
BarI GAAGNNNNNNTAC 4 cut(s) 175, 207, 239, 271
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 18
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 2 cut(s) 65, 331
BfaI CTAG 1 cut(s) 35
BisI GCNGC 2 cut(s) 7, 104
BlsI GCNGC 2 cut(s) 8, 105
Bme1390I CCNGG 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 123, 184
BmrFI CCNGG 1 cut(s) 241
BmsI GCATC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 306
Bpu14I TTCGAA 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 4 cut(s) 108, 117, 186, 263
BseNI ACTGG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 18
Bsh1236I CGCG 1 cut(s) 294
BshNI GGYRCC 1 cut(s) 182
BsiSI CCGG 2 cut(s) 107, 240
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 65, 331
Bso31I GGTCTC 1 cut(s) 65
Bsp119I TTCGAA 1 cut(s) 231
BspACI CCGC 4 cut(s) 83, 94, 104, 294
BspCNI CTCAG 4 cut(s) 109, 118, 187, 264
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 123, 184
BspT104I TTCGAA 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 329
BstBI TTCGAA 1 cut(s) 231
BstDEI CTNAG 4 cut(s) 117, 126, 195, 272
BstENI CCTNNNNNAGG 1 cut(s) 38
BstFNI CGCG 1 cut(s) 294
BstHHI GCGC 2 cut(s) 157, 294
BstMAI GTCTC 2 cut(s) 65, 331
BstSCI CCNGG 1 cut(s) 239
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 306
CfoI GCGC 2 cut(s) 157, 294
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 3 cut(s) 25, 59, 183
CviJI RGCY 2 cut(s) 33, 122
CviKI_1 RGCY 2 cut(s) 33, 122
CviQI GTAC 3 cut(s) 25, 59, 183
DdeI CTNAG 4 cut(s) 117, 126, 195, 272
DraIII CACNNNGTG 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
EciI GGCGGA 2 cut(s) 83, 98
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 38
FaiI YATR 4 cut(s) 15, 101, 135, 210
Fnu4HI GCNGC 2 cut(s) 7, 104
Fsp4HI GCNGC 2 cut(s) 7, 104
FspAI RTGCGCAY 1 cut(s) 156
FspBI CTAG 1 cut(s) 35
FspI TGCGCA 1 cut(s) 156
GlaI GCGC 2 cut(s) 156, 293
GluI GCNGC 2 cut(s) 7, 104
HapII CCGG 2 cut(s) 107, 240
HhaI GCGC 2 cut(s) 157, 294
Hin6I GCGC 2 cut(s) 155, 292
HinP1I GCGC 2 cut(s) 155, 292
HinfI GANTC 2 cut(s) 53, 268
HpaII CCGG 2 cut(s) 107, 240
Hpy188I TCNGA 2 cut(s) 196, 273
Hpy188III TCNNGA 3 cut(s) 125, 265, 284
Hpy99I CGWCG 2 cut(s) 53, 170
HpyCH4III ACNGT 1 cut(s) 76
HpyF3I CTNAG 4 cut(s) 117, 126, 195, 272
HspAI GCGC 2 cut(s) 155, 292
KpnI GGTACC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 6 cut(s) 120, 130, 138, 250, 253, 274
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 112, 140
MboII GAAGA 7 cut(s) 183, 259, 306, 337, 340, 343, 346
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 4 cut(s) 34, 82, 112, 173
MspI CCGG 2 cut(s) 107, 240
MspR9I CCNGG 1 cut(s) 241
MvnI CGCG 1 cut(s) 294
NciI CCSGG 1 cut(s) 241
NlaIV GGNNCC 2 cut(s) 123, 184
NsbI TGCGCA 1 cut(s) 156
NspV TTCGAA 1 cut(s) 231
PfeI GAWTC 1 cut(s) 268
PflFI GACNNNGTC 1 cut(s) 89
PkrI GCNGC 2 cut(s) 8, 105
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 123, 184
PspPI GGNCC 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 89
RsaI GTAC 3 cut(s) 26, 60, 184
RsaNI GTAC 3 cut(s) 25, 59, 183
SatI GCNGC 2 cut(s) 7, 104
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 241
SetI ASST 3 cut(s) 64, 93, 165
SfaNI GCATC 1 cut(s) 142
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 1 cut(s) 91
SsiI CCGC 4 cut(s) 83, 94, 104, 294
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 76
TaqI TCGA 2 cut(s) 165, 231
TatI WGTACW 1 cut(s) 24
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 268
TseI GCWGC 1 cut(s) 6
TspDTI ATGAA 2 cut(s) 122, 269
Tth111I GACNNNGTC 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 91
XagI CCTNNNNNAGG 1 cut(s) 38
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.