Rmu_sc0001302.1_g000001

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001302.1
OG0000631
Physical Location & Seq
Forward (+)
3427 .. 3872
446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001302.1_g000001.1.cds

Sequence Viewer

Length: 387 bp
atgggatacttttcgttccaaaaaggcaaccaattcgaagtctgcagcaaactcgatggatttctgggcttgtactatgaggccactgtcatcgcaaacatgggcaccaactatgtattccagtacaaaaacctcatggatgagttcaacgactctgtgtcgctcaaagagaccattaaggcgccgaggattgatgcttacgatcttgatgggtggtgggtcagtaagatttcgtctgaggaaaatgggtctgggcatcagtctgtgttttttgagactactgggcaagagcttgattacccagttttgaagttgatggttcatcaagattggcgcaatggaaaatgggtgtcgtccaagaagaccaagaggaatgctgtgcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

128

Amino Acids

14.8

Weight (kDa)

6.1

Isoelectric Point (pI)

21.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 104, 181
AcyI GRCGYC 1 cut(s) 182
AfaI GTAC 2 cut(s) 74, 125
AgsI TTSAA 2 cut(s) 148, 310
AhdI GACNNNNNGTC 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw26I GTCTC 2 cut(s) 164, 269
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 45
AspLEI GCGC 2 cut(s) 184, 336
AsuII TTCGAA 1 cut(s) 36
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 2 cut(s) 104, 181
BbsI GAAGAC 1 cut(s) 368
BbvI GCAGC 1 cut(s) 57
BccI CCATC 3 cut(s) 50, 203, 310
BcgI CGANNNNNNTGC 4 cut(s) 16, 34, 50, 68
BcoDI GTCTC 2 cut(s) 164, 269
BfmI CTRYAG 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 185
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BmeRI GACNNNNNGTC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 106, 183
BmrI ACTGGG 2 cut(s) 291, 296
BmsI GCATC 2 cut(s) 184, 265
BmuI ACTGGG 2 cut(s) 291, 296
BpiI GAAGAC 1 cut(s) 368
Bpu14I TTCGAA 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 182
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 185
Bse1I ACTGG 3 cut(s) 121, 286, 302
Bse3DI GCAATG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 3 cut(s) 121, 286, 302
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 1 cut(s) 57
BshFI GGCC 1 cut(s) 83
BshNI GGYRCC 2 cut(s) 104, 181
BsmAI GTCTC 2 cut(s) 164, 269
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 202
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 106, 183
BspMAI CTGCAG 1 cut(s) 47
BspT104I TTCGAA 1 cut(s) 36
BspT107I GGYRCC 2 cut(s) 104, 181
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 3 cut(s) 121, 286, 302
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 1 cut(s) 202
BssNI GRCGYC 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 182
BstBI TTCGAA 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 145
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 2 cut(s) 184, 336
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 2 cut(s) 164, 269
BstMBI GATC 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 368
BsuRI GGCC 1 cut(s) 83
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 84
CfoI GCGC 2 cut(s) 184, 336
Csp6I GTAC 2 cut(s) 73, 124
CviAII CATG 2 cut(s) 100, 136
CviJI RGCY 3 cut(s) 69, 83, 292
CviKI_1 RGCY 3 cut(s) 69, 83, 292
CviQI GTAC 2 cut(s) 73, 124
DdeI CTNAG 1 cut(s) 237
DinI GGCGCC 1 cut(s) 183
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DriI GACNNNNNGTC 1 cut(s) 157
Eam1105I GACNNNNNGTC 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 164
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
FaeI CATG 2 cut(s) 103, 139
FaiI YATR 4 cut(s) 78, 101, 114, 137
FatI CATG 2 cut(s) 99, 135
Fnu4HI GCNGC 1 cut(s) 46
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 46
GlaI GCGC 2 cut(s) 183, 335
GluI GCNGC 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 83
HhaI GCGC 2 cut(s) 184, 336
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 2 cut(s) 103, 139
Hin6I GCGC 2 cut(s) 182, 334
HinP1I GCGC 2 cut(s) 182, 334
HinfI GANTC 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 206, 326
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 45
HpyF3I CTNAG 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 2 cut(s) 103, 139
HspAI GCGC 2 cut(s) 182, 334
KasI GGCGCC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 5 cut(s) 50, 134, 237, 267, 315
Lsp1109I GCAGC 1 cut(s) 57
LweI GCATC 2 cut(s) 184, 265
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 1 cut(s) 32
Mly113I GGCGCC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 5 cut(s) 73, 143, 180, 232, 363
MseI TTAA 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 379
NarI GGCGCC 1 cut(s) 182
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 103, 139
NlaIV GGNNCC 2 cut(s) 106, 183
NmeAIII GCCGAG 1 cut(s) 210
NspV TTCGAA 1 cut(s) 36
PctI GAATGC 1 cut(s) 379
PkrI GCNGC 1 cut(s) 47
PleI GAGTC 1 cut(s) 146
PluTI GGCGCC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 106, 183
PstI CTGCAG 1 cut(s) 47
RsaI GTAC 2 cut(s) 74, 125
RsaNI GTAC 2 cut(s) 73, 124
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 1 cut(s) 202
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 107
SetI ASST 2 cut(s) 135, 294
SfaNI GCATC 2 cut(s) 184, 265
SfcI CTRYAG 1 cut(s) 43
SfoI GGCGCC 1 cut(s) 183
SfuI TTCGAA 1 cut(s) 36
Sse9I AATT 1 cut(s) 32
SspDI GGCGCC 1 cut(s) 181
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 2 cut(s) 36, 54
TasI AATT 1 cut(s) 32
TatI WGTACW 2 cut(s) 72, 123
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 91
TseI GCWGC 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.