RLG00000001142

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000631
Physical Location & Seq
Forward (+)
10749207 .. 10749656
450 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001142

Sequence Viewer

Length: 366 bp
ATGGGACACTTTTCTTTCCAAAGAGGCAACCAAGTCGAAGTCTGTAGCAAACTCGATGGATTTTTGGGCTCATACTATGAGGCCACCGTCGTCGCAAACATGGGCACCAACTATGTGATCCAGTACAAAAACTTCGTGGAGGAGTTCAACGACTCTGTGCCACTCAAAAAGACCATTAAGACGGTGGAGGTCCGGCCACTGCCTACGATTTCGTTGAAGGAAAATGGGTCAGGGCATCAGTCTATGTTTTTCGAGACTACTGGGCAAGAGCTTGATTACCCAGTTTTGAAGCTGATGGTTCATCAAGATTGGCGCAATGGAAAATGGGTGTCGTCCAAGAAGACCAAGAGGAATACTGTGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

122

Amino Acids

13.91

Weight (kDa)

9.24

Isoelectric Point (pI)

18.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 9 - 68 5.3e-13 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AclWI GGATC 1 cut(s) 112
AcoI YGGCCR 1 cut(s) 194
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 3 cut(s) 148, 217, 289
AluBI AGCT 2 cut(s) 271, 292
AluI AGCT 2 cut(s) 271, 292
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 1 cut(s) 112
AoxI GGCC 2 cut(s) 81, 194
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 190
AvaII GGWCC 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 116, 148
BbsI GAAGAC 1 cut(s) 347
BccI CCATC 2 cut(s) 50, 289
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BcoDI GTCTC 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 106
BmrI ACTGGG 2 cut(s) 270, 275
BmsI GCATC 1 cut(s) 244
BmuI ACTGGG 2 cut(s) 270, 275
BpiI GAAGAC 1 cut(s) 347
Bse1I ACTGG 3 cut(s) 121, 265, 281
Bse3DI GCAATG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 322
BseNI ACTGG 3 cut(s) 121, 265, 281
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 107
BshFI GGCC 2 cut(s) 83, 196
BshNI GGYRCC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 193
BslFI GGGAC 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 83, 196
Bsp1286I GDGCHC 2 cut(s) 71, 107
Bsp143I GATC 1 cut(s) 117
BspANI GGCC 2 cut(s) 83, 196
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 3 cut(s) 121, 265, 281
BssMI GATC 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 88, 184, 358
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 1 cut(s) 120
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 347
BsuRI GGCC 2 cut(s) 83, 196
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 197
CfoI GCGC 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 100
CviJI RGCY 5 cut(s) 69, 83, 196, 271, 292
CviKI_1 RGCY 5 cut(s) 69, 83, 196, 271, 292
CviQI GTAC 1 cut(s) 124
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 71
FaeI CATG 1 cut(s) 103
FaiI YATR 5 cut(s) 73, 78, 101, 114, 245
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 71
GlaI GCGC 1 cut(s) 314
HaeIII GGCC 2 cut(s) 83, 196
HapII CCGG 1 cut(s) 193
HhaI GCGC 1 cut(s) 315
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 1 cut(s) 152
HpaII CCGG 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 253, 305
Hpy99I CGWCG 2 cut(s) 92, 95
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 3 cut(s) 88, 184, 358
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 1 cut(s) 313
Kzo9I GATC 1 cut(s) 117
LpnPI CCDG 5 cut(s) 134, 206, 216, 246, 294
LweI GCATC 1 cut(s) 244
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 1 cut(s) 352
MhlI GDGCHC 2 cut(s) 71, 107
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 5 cut(s) 17, 73, 133, 181, 342
MseI TTAA 1 cut(s) 177
MspI CCGG 1 cut(s) 193
NdeII GATC 1 cut(s) 117
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 106
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 190
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 177
Sau3AI GATC 1 cut(s) 117
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 2 cut(s) 71, 107
SetI ASST 3 cut(s) 192, 273, 294
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 43
SinI GGWCC 1 cut(s) 190
TaaI ACNGT 3 cut(s) 88, 184, 358
TaqI TCGA 3 cut(s) 36, 54, 252
TatI WGTACW 1 cut(s) 123
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 204
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.