Rmu_sc0002724.1_g000039

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002724.1
OG0000631
Physical Location & Seq
Reverse (-)
200253 .. 200486
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002724.1_g000039.1.cds

Sequence Viewer

Length: 234 bp
atggaggttaatgttgtgtttcatgcgggtgataggattgatgcttactatcttgatgggtggtgggtcgatacgattttgttggaggaaaatgggtctgggcctcagttcgtgtttttcgagactactaggcaagagcttgattacccagttttgaagctgaaggttcatcaagattggtgtaatgggaaatgggtgtcgtccaagaagaccaagaggaatgttgtgcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

77

Amino Acids

9.1

Weight (kDa)

6.05

Isoelectric Point (pI)

24.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 182
AgsI TTSAA 1 cut(s) 157
AluBI AGCT 2 cut(s) 139, 160
AluI AGCT 2 cut(s) 139, 160
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 215
BccI CCATC 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 149
BshFI GGCC 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 1 cut(s) 103
BspACI CCGC 1 cut(s) 26
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 118
BsrI ACTGG 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 101
CviAII CATG 1 cut(s) 23
CviJI RGCY 3 cut(s) 103, 139, 160
CviKI_1 RGCY 3 cut(s) 103, 139, 160
DdeI CTNAG 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 182
FaeI CATG 1 cut(s) 26
FaiI YATR 1 cut(s) 24
FatI CATG 1 cut(s) 22
FauI CCCGC 1 cut(s) 19
FspBI CTAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 103
Hin1II CATG 1 cut(s) 26
HphI GGTGA 1 cut(s) 41
Hpy188III TCNNGA 3 cut(s) 53, 121, 173
HpyAV CCTTC 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 1 cut(s) 26
LpnPI CCDG 2 cut(s) 84, 162
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 129
MboII GAAGA 1 cut(s) 220
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 3 cut(s) 79, 114, 210
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 27
NlaIII CATG 1 cut(s) 26
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PspPI GGNCC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 101
SetI ASST 4 cut(s) 9, 141, 162, 168
SfaNI GCATC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 27
SsiI CCGC 1 cut(s) 26
SspMI CTAG 1 cut(s) 129
TaqI TCGA 2 cut(s) 69, 120
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TspDTI ATGAA 2 cut(s) 11, 158
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.