RLG00000025490

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000631
Physical Location & Seq
Reverse (-)
46050668 .. 46054792
4125 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025490

Sequence Viewer

Length: 957 bp
ATGGCTTTAGACTCTAGCGGCTGGAGTTGGTGGGCTGGCGACCAGATCAGTGTTCCTTTTGGGGCGGCGGCGTGGTTTGTTAGAACTGGCGGTGGCTTTGGTGGTGCTTTTCATGACAGTTTGTGTGCCAGTTCTGGTTTTTGGAAGGTCGATGGTAGCTCCAGGGTTACCAAGTCAGCGTTGCATGGCGTTGAAAGGAAGTCTGGCGACGGCGCTGATGTCATGACGGCTGGGCTGCATGGCGACGGCTTTGTTGCAGGGCAAGATCTGTGCAGCATTGTTACGGGCTCGAGTCTGGAGCCTTCTACTGGGCCTTGGGTCTTAGTTTTTGGGCTCTGGATTTTACTGCCTTATGGTGAGAAGAAGCATGAGTGCTCATCGGATTGGCCTAGAGTCACCGTCTTGAGGGATTGTGCTACCACAGTGTTCATCACCAAGTTAAAGAGCCATTGGCAAATCCCTAGTGAAAATGATGATTGGGGTTGCTGCAAAATAATGGTGTTACACTCAGAGATTTCGTTCCGAAGAGGCGATAAGGTCGAAATATGTAGCAAAGTTCCGGGATATATTGGCTCTTACTTTGAGGCAACCGTAGTAGCAAACATGGGCAGTAACTATGTGGTTCAGTACAAGAACCTGGTCGAGGAATATGACGAGTCTGTACCTTTGAAAGAGACTGTAATGGCGGACGAGGTCCGCCCTGTGCCCCCGGAAGTTACTGAGGCTCCTGAGTTTCATATTGGTAACAGGGTCGATGCGTACGACCTCGATGGGTGGTGGGTTGGTACCATTTCTTCTGAGAAAAATGTGTATGGTTTTCACACTCTGTTTTTTGAAACAACCGGGGAGAAGATTTCTTACCCACTTTGGAATCTGAGAGTTCATCAAGACTGGCGCGGTGGAAAGTGGATCGTGTCTTCCAAGAAGAAGAAGAACAGACTTGCTTTGCCCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

319

Amino Acids

35.27

Weight (kDa)

5.74

Isoelectric Point (pI)

32.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 177 - 237 6.7e-16 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 785
AccB1I GGYRCC 1 cut(s) 785
AccII CGCG 1 cut(s) 897
AciI CCGC 7 cut(s) 18, 65, 68, 90, 686, 697, 897
AclWI GGATC 1 cut(s) 917
AfaI GTAC 4 cut(s) 629, 663, 761, 787
AfiI CCNNNNNNNGG 3 cut(s) 308, 405, 643
AgsI TTSAA 3 cut(s) 194, 670, 836
AjnI CCWGG 2 cut(s) 161, 636
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 1 cut(s) 668
AlwI GGATC 1 cut(s) 917
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 2 cut(s) 311, 386
ApeKI GCWGC 3 cut(s) 235, 273, 486
Asp718I GGTACC 1 cut(s) 785
AspLEI GCGC 2 cut(s) 215, 897
AspS9I GGNCC 2 cut(s) 311, 694
AsuC2I CCSGG 3 cut(s) 561, 710, 844
AsuHPI GGTGA 3 cut(s) 368, 388, 424
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 1 cut(s) 694
BaeGI GKGCMC 1 cut(s) 708
BanI GGYRCC 1 cut(s) 785
BanII GRGCYC 2 cut(s) 290, 336
BarI GAAGNNNNNNTAC 4 cut(s) 778, 810, 842, 874
BbsI GAAGAC 1 cut(s) 909
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 3 cut(s) 222, 285, 473
BccI CCATC 2 cut(s) 146, 764
BceAI ACGGC 3 cut(s) 226, 243, 262
BciT130I CCWGG 2 cut(s) 163, 638
BcnI CCSGG 3 cut(s) 561, 710, 844
BcoDI GTCTC 1 cut(s) 668
BfaI CTAG 3 cut(s) 15, 390, 462
BfoI RGCGCY 1 cut(s) 216
BglII AGATCT 1 cut(s) 265
BisI GCNGC 6 cut(s) 19, 66, 69, 236, 274, 487
BlsI GCNGC 6 cut(s) 20, 67, 70, 237, 275, 488
Bme1390I CCNGG 5 cut(s) 163, 561, 638, 710, 844
Bme18I GGWCC 1 cut(s) 694
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 311, 694
BmiI GGNNCC 3 cut(s) 300, 726, 787
BmrFI CCNGG 5 cut(s) 163, 561, 638, 710, 844
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 745
BmuI ACTGGG 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 909
BpmI CTGGAG 3 cut(s) 43, 145, 317
BpuEI CTTGAG 1 cut(s) 424
BpuMI CCSGG 3 cut(s) 561, 710, 844
BsaJI CCNNGG 4 cut(s) 162, 314, 708, 843
BsaXI ACNNNNNCTCC 2 cut(s) 709, 739
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 405, 643
Bse1I ACTGG 4 cut(s) 91, 129, 313, 896
BseBI CCWGG 2 cut(s) 163, 638
BseDI CCNNGG 4 cut(s) 162, 314, 708, 843
BseLI CCNNNNNNNGG 3 cut(s) 308, 405, 643
BseMII CTCAG 5 cut(s) 522, 711, 720, 789, 866
BseNI ACTGG 4 cut(s) 91, 129, 313, 896
BseSI GKGCMC 1 cut(s) 708
BseXI GCAGC 3 cut(s) 222, 285, 473
BseYI CCCAGC 1 cut(s) 230
BsgI GTGCAG 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 897
BshFI GGCC 2 cut(s) 313, 388
BshNI GGYRCC 1 cut(s) 785
BsiHKAI GWGCWC 1 cut(s) 377
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 3 cut(s) 560, 710, 843
BsiWI CGTACG 1 cut(s) 759
BslI CCNNNNNNNGG 3 cut(s) 308, 405, 643
BsmAI GTCTC 1 cut(s) 668
BsnI GGCC 2 cut(s) 313, 388
BsoBI CYCGRG 1 cut(s) 289
Bsp1286I GDGCHC 4 cut(s) 290, 336, 377, 708
Bsp143I GATC 3 cut(s) 45, 265, 909
BspACI CCGC 7 cut(s) 18, 65, 68, 90, 686, 697, 897
BspANI GGCC 2 cut(s) 313, 388
BspCNI CTCAG 5 cut(s) 521, 712, 721, 790, 867
BspFNI CGCG 1 cut(s) 897
BspHI TCATGA 2 cut(s) 112, 222
BspLI GGNNCC 3 cut(s) 300, 726, 787
BspPI GGATC 1 cut(s) 917
BspT107I GGYRCC 1 cut(s) 785
BsrI ACTGG 4 cut(s) 91, 129, 313, 896
BssECI CCNNGG 4 cut(s) 162, 314, 708, 843
BssMI GATC 3 cut(s) 45, 265, 909
BssT1I CCWWGG 1 cut(s) 314
Bst2UI CCWGG 2 cut(s) 163, 638
Bst4CI ACNGT 5 cut(s) 119, 400, 424, 592, 679
Bst6I CTCTTC 1 cut(s) 520
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 6 cut(s) 322, 508, 720, 729, 798, 875
BstEII GGTNACC 1 cut(s) 166
BstENI CCTNNNNNAGG 1 cut(s) 641
BstFNI CGCG 1 cut(s) 897
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 2 cut(s) 215, 897
BstKTI GATC 3 cut(s) 48, 268, 912
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 3 cut(s) 45, 265, 909
BstNI CCWGG 2 cut(s) 163, 638
BstPI GGTNACC 1 cut(s) 166
BstSCI CCNGG 5 cut(s) 161, 559, 636, 708, 842
BstSLI GKGCMC 1 cut(s) 708
BstUI CGCG 1 cut(s) 897
BstV1I GCAGC 3 cut(s) 222, 285, 473
BstV2I GAAGAC 1 cut(s) 909
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 2 cut(s) 313, 388
BtsIMutI CAGTG 2 cut(s) 55, 429
Cac8I GCNNGC 1 cut(s) 37
CciI TCATGA 2 cut(s) 112, 222
CfoI GCGC 2 cut(s) 215, 897
Cfr13I GGNCC 2 cut(s) 311, 694
CsiI ACCWGGT 1 cut(s) 636
Csp6I GTAC 4 cut(s) 628, 662, 760, 786
CviAII CATG 6 cut(s) 113, 185, 223, 239, 368, 604
CviQI GTAC 4 cut(s) 628, 662, 760, 786
DdeI CTNAG 6 cut(s) 322, 508, 720, 729, 798, 875
DpnI GATC 3 cut(s) 47, 267, 911
DpnII GATC 3 cut(s) 45, 265, 909
Eam1104I CTCTTC 1 cut(s) 520
EarI CTCTTC 1 cut(s) 520
EciI GGCGGA 2 cut(s) 686, 701
Eco130I CCWWGG 1 cut(s) 314
Eco24I GRGCYC 2 cut(s) 290, 336
Eco47I GGWCC 1 cut(s) 694
Eco88I CYCGRG 1 cut(s) 289
Eco91I GGTNACC 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 641
EcoO65I GGTNACC 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 161, 636
EcoT14I CCWWGG 1 cut(s) 314
EcoT38I GRGCYC 2 cut(s) 290, 336
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 6 cut(s) 116, 188, 226, 242, 371, 607
FatI CATG 6 cut(s) 112, 184, 222, 238, 367, 603
Fnu4HI GCNGC 6 cut(s) 19, 66, 69, 236, 274, 487
FriOI GRGCYC 2 cut(s) 290, 336
Fsp4HI GCNGC 6 cut(s) 19, 66, 69, 236, 274, 487
FspBI CTAG 3 cut(s) 15, 390, 462
GlaI GCGC 2 cut(s) 214, 896
GluI GCNGC 6 cut(s) 19, 66, 69, 236, 274, 487
GsaI CCCAGC 1 cut(s) 234
GsuI CTGGAG 3 cut(s) 43, 145, 317
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 313, 388
HapII CCGG 3 cut(s) 560, 710, 843
HhaI GCGC 2 cut(s) 215, 897
Hin1II CATG 6 cut(s) 116, 188, 226, 242, 371, 607
Hin6I GCGC 2 cut(s) 213, 895
HinP1I GCGC 2 cut(s) 213, 895
HinfI GANTC 5 cut(s) 11, 292, 393, 656, 871
HpaII CCGG 3 cut(s) 560, 710, 843
HphI GGTGA 3 cut(s) 368, 388, 424
Hpy188I TCNGA 5 cut(s) 382, 511, 524, 799, 876
Hpy188III TCNNGA 7 cut(s) 113, 223, 296, 337, 403, 728, 887
Hpy99I CGWCG 2 cut(s) 212, 248
HpyAV CCTTC 2 cut(s) 139, 312
HpyCH4III ACNGT 5 cut(s) 119, 400, 424, 592, 679
HpyCH4V TGCA 5 cut(s) 184, 238, 257, 273, 489
HpyF3I CTNAG 6 cut(s) 322, 508, 720, 729, 798, 875
Hsp92II CATG 6 cut(s) 116, 188, 226, 242, 371, 607
HspAI GCGC 2 cut(s) 213, 895
KpnI GGTACC 1 cut(s) 789
Kzo9I GATC 3 cut(s) 45, 265, 909
LmnI GCTCC 3 cut(s) 164, 298, 730
Lsp1109I GCAGC 3 cut(s) 222, 285, 473
LweI GCATC 1 cut(s) 745
MabI ACCWGGT 1 cut(s) 636
MaeI CTAG 3 cut(s) 15, 390, 462
MaeIII GTNAC 7 cut(s) 166, 280, 394, 501, 611, 715, 743
MalI GATC 3 cut(s) 47, 267, 911
MboI GATC 3 cut(s) 45, 265, 909
MboII GAAGA 8 cut(s) 373, 537, 786, 862, 909, 937, 940, 943
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 4 cut(s) 290, 336, 377, 708
MlyI GAGTC 4 cut(s) 5, 301, 402, 665
MnlI CCTC 7 cut(s) 399, 521, 577, 637, 685, 715, 776
MseI TTAA 1 cut(s) 440
MspI CCGG 3 cut(s) 560, 710, 843
MspR9I CCNGG 5 cut(s) 163, 561, 638, 710, 844
MvaI CCWGG 2 cut(s) 163, 638
MvnI CGCG 1 cut(s) 897
NciI CCSGG 3 cut(s) 561, 710, 844
NdeII GATC 3 cut(s) 45, 265, 909
NlaIII CATG 6 cut(s) 116, 188, 226, 242, 371, 607
NlaIV GGNNCC 3 cut(s) 300, 726, 787
NmuCI GTSAC 1 cut(s) 394
PaeR7I CTCGAG 1 cut(s) 289
PagI TCATGA 2 cut(s) 112, 222
PcsI WCGNNNNNNNCGW 1 cut(s) 759
PfeI GAWTC 1 cut(s) 871
Pfl23II CGTACG 1 cut(s) 759
PflFI GACNNNGTC 1 cut(s) 692
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 6 cut(s) 20, 67, 70, 237, 275, 488
PleI GAGTC 4 cut(s) 5, 300, 401, 664
PpsI GAGTC 4 cut(s) 5, 300, 401, 664
Psp6I CCWGG 2 cut(s) 161, 636
PspEI GGTNACC 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 230
PspGI CCWGG 2 cut(s) 161, 636
PspLI CGTACG 1 cut(s) 759
PspN4I GGNNCC 3 cut(s) 300, 726, 787
PspPI GGNCC 2 cut(s) 311, 694
PspXI VCTCGAGB 1 cut(s) 289
PsuI RGATCY 1 cut(s) 265
PsyI GACNNNGTC 1 cut(s) 692
RsaI GTAC 4 cut(s) 629, 663, 761, 787
RsaNI GTAC 4 cut(s) 628, 662, 760, 786
SaqAI TTAA 1 cut(s) 440
SatI GCNGC 6 cut(s) 19, 66, 69, 236, 274, 487
Sau3AI GATC 3 cut(s) 45, 265, 909
Sau96I GGNCC 2 cut(s) 311, 694
SchI GAGTC 4 cut(s) 5, 301, 402, 665
ScrFI CCNGG 5 cut(s) 163, 561, 638, 710, 844
SduI GDGCHC 4 cut(s) 290, 336, 377, 708
SetI ASST 7 cut(s) 150, 161, 540, 639, 667, 696, 768
SexAI ACCWGGT 1 cut(s) 636
SfaNI GCATC 1 cut(s) 745
Sfr274I CTCGAG 1 cut(s) 289
SinI GGWCC 1 cut(s) 694
SlaI CTCGAG 1 cut(s) 289
SmlI CTYRAG 2 cut(s) 289, 403
SmoI CTYRAG 2 cut(s) 289, 403
SsiI CCGC 7 cut(s) 18, 65, 68, 90, 686, 697, 897
SspMI CTAG 3 cut(s) 15, 390, 462
StyD4I CCNGG 5 cut(s) 161, 559, 636, 708, 842
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 5 cut(s) 119, 400, 424, 592, 679
TaqI TCGA 6 cut(s) 150, 290, 540, 642, 753, 768
TatI WGTACW 1 cut(s) 627
TauI GCSGC 3 cut(s) 21, 68, 71
TfiI GAWTC 1 cut(s) 871
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TscAI CASTG 2 cut(s) 55, 429
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 3 cut(s) 235, 273, 486
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 4 cut(s) 101, 418, 725, 872
TspRI CASTG 2 cut(s) 55, 429
Tth111I GACNNNGTC 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 694
XagI CCTNNNNNAGG 1 cut(s) 641
XhoI CTCGAG 1 cut(s) 289
XspI CTAG 3 cut(s) 15, 390, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.