MD04G1194500.v1.1

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000631
Physical Location & Seq
Reverse (-)
28373829 .. 28374128
300 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1194500.v1.1.491

Sequence Viewer

Length: 300 bp
ATGGATTTAACCCCAACACGAAAGGATTTCCAAAAAGGTGATCGAGTGGAAGTGAGCAGCAGAGATTATGGGTTTATTGGCGCGTATTATGAAGCAACTGTAGTTGAAGACTTGGGGGGCAAGTATAAGGTGGAGTACTTGAGTTTGGTGGATGAGAAGGACGAGTCCCGACAACTCCAAGGGGATGTTGACGCAGATGAGCTCCGCCCTCTGCCACCTTCACCTTCAGAGCAAGAGAAAATGAAAAGTTTGATGTCCTTGATAGGGTTGATGTGCATGACCTGGACGCTTGGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

100

Amino Acids

11.16

Weight (kDa)

4.5

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 13 - 73 7.6e-17 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 83
AciI CCGC 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 1 cut(s) 107
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw21I GWGCWC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 57
AspLEI GCGC 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 50, 213
BanII GRGCYC 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 283
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 283
BmrFI CCNGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 2 cut(s) 157, 190
BseLI CCNNNNNNNGG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 204
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 1 cut(s) 205
BspFNI CGCG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 100
BstF5I GGATG 2 cut(s) 157, 190
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 69
BstV2I GAAGAC 1 cut(s) 114
BtsCI GGATG 2 cut(s) 157, 190
CfoI GCGC 1 cut(s) 83
CseI GACGC 2 cut(s) 200, 295
Csp6I GTAC 1 cut(s) 136
CviAII CATG 1 cut(s) 277
CviJI RGCY 1 cut(s) 202
CviKI_1 RGCY 1 cut(s) 202
CviQI GTAC 1 cut(s) 136
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EciI GGCGGA 1 cut(s) 194
Ecl136II GAGCTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 210
EcoICRI GAGCTC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 1 cut(s) 280
FaiI YATR 4 cut(s) 69, 90, 126, 278
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 2 cut(s) 164, 197
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 58
GlaI GCGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 58
HgaI GACGC 2 cut(s) 200, 295
HhaI GCGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 1 cut(s) 164
HphI GGTGA 2 cut(s) 50, 213
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 168
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 151, 228, 234
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 276
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 1 cut(s) 81
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 2 cut(s) 268, 295
Lsp1109I GCAGC 1 cut(s) 69
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 204
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 1 cut(s) 219
MseI TTAA 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 1 cut(s) 83
NdeII GATC 1 cut(s) 40
NlaIII CATG 1 cut(s) 280
PkrI GCNGC 1 cut(s) 59
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SacI GAGCTC 1 cut(s) 204
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 40
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 283
SduI GDGCHC 1 cut(s) 204
SetI ASST 6 cut(s) 40, 132, 204, 220, 226, 284
SfcI CTRYAG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
SsiI CCGC 1 cut(s) 205
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 281
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 43
TatI WGTACW 1 cut(s) 135
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 2 cut(s) 105, 257
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.