Rh6BG331100

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000631
Physical Location & Seq
Reverse (-)
56360480 .. 56361049
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG331100.1

Sequence Viewer

Length: 459 bp
ATGGCTTTTCACTCAAAACGTTCTTTCCAAAGAGGAGATCAAGTGGAAGTGTCTAGCAATATGGAAGGGTTTCTTGGCTCATTTTGGCGAGCAACCATAGTTGCAAATATGGGTACAAACTACGTGGTTGAGTACAAAGATCTCGTGGAGGAACATGATGAATCTACACTTCTGAGAGAGACTGTCATGGCGAACCAGGTCCGGCCTCTGCCACCTAGAATTGCAGCTTCTCGGTTTTCCGATAATAACAAGGTTGACGCGTTTGACAGGGACGGTTGGTGGGTCGGAAAGATTTCTGGGAGGGAAGGGTCTGATAAGTACTATGTTTTCTTTGAAACCACCGGGGAAGAGATTGCTTACCCGATTTCGCAGTTGAGGTTTCATCTAGACTGGCGCAATGGCAAGTGGATTTCTCACAAGAATCCTTCCAAAAAGAGGCGCAAGATGGATGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

152

Amino Acids

17.77

Weight (kDa)

6.92

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 12 - 72 7.6e-18 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 260
AclI AACGTT 1 cut(s) 19
AfaI GTAC 3 cut(s) 115, 134, 320
AfiI CCNNNNNNNGG 1 cut(s) 435
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 1 cut(s) 335
AjnI CCWGG 1 cut(s) 195
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 173
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 224
Asp700I GAANNNNTTC 2 cut(s) 69, 292
AspLEI GCGC 2 cut(s) 396, 441
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 343
AvaII GGWCC 1 cut(s) 199
BauI CACGAG 1 cut(s) 143
BbvI GCAGC 1 cut(s) 236
BccI CCATC 1 cut(s) 439
BciT130I CCWGG 1 cut(s) 197
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 3 cut(s) 54, 216, 386
BglII AGATCT 1 cut(s) 139
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmcAI AGTACT 1 cut(s) 320
Bme1390I CCNGG 2 cut(s) 197, 343
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 197, 343
BpuMI CCSGG 1 cut(s) 343
BsaAI YACGTR 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 342
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 435
Bse1I ACTGG 1 cut(s) 395
Bse3DI GCAATG 1 cut(s) 403
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 435
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 395
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 1 cut(s) 205
BsiSI CCGG 2 cut(s) 202, 342
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 205
Bsp143I GATC 2 cut(s) 37, 139
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 403
BsrI ACTGG 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 2 cut(s) 37, 139
BssSI CACGAG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 184, 275
Bst6I CTCTTC 1 cut(s) 342
BstBAI YACGTR 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 454
BstFNI CGCG 1 cut(s) 260
BstHHI GCGC 2 cut(s) 396, 441
BstKTI GATC 2 cut(s) 40, 142
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 37, 139
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 195, 341
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 2 cut(s) 396, 441
Cfr13I GGNCC 1 cut(s) 199
CseI GACGC 1 cut(s) 266
CsiI ACCWGGT 1 cut(s) 195
Csp6I GTAC 3 cut(s) 114, 133, 319
CspCI CAANNNNNGTGG 2 cut(s) 105, 140
CviAII CATG 2 cut(s) 155, 187
CviJI RGCY 4 cut(s) 5, 78, 205, 227
CviKI_1 RGCY 4 cut(s) 5, 78, 205, 227
CviQI GTAC 3 cut(s) 114, 133, 319
DdeI CTNAG 1 cut(s) 173
DpnI GATC 2 cut(s) 39, 141
DpnII GATC 2 cut(s) 37, 139
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 158, 190
FaiI YATR 6 cut(s) 62, 98, 110, 156, 188, 324
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FaqI GGGAC 1 cut(s) 284
FatI CATG 2 cut(s) 154, 186
Fnu4HI GCNGC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 3 cut(s) 54, 216, 386
GlaI GCGC 2 cut(s) 395, 440
GluI GCNGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 205
HapII CCGG 2 cut(s) 202, 342
HgaI GACGC 1 cut(s) 266
HhaI GCGC 2 cut(s) 396, 441
Hin1II CATG 2 cut(s) 158, 190
Hin6I GCGC 2 cut(s) 394, 439
HinP1I GCGC 2 cut(s) 394, 439
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 2 cut(s) 161, 421
HpaII CCGG 2 cut(s) 202, 342
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 4 cut(s) 174, 241, 287, 313
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 3 cut(s) 59, 299, 435
HpyCH4III ACNGT 2 cut(s) 184, 275
HpyCH4IV ACGT 2 cut(s) 19, 123
HpyCH4V TGCA 2 cut(s) 104, 224
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 2 cut(s) 19, 123
Hsp92II CATG 2 cut(s) 158, 190
HspAI GCGC 2 cut(s) 394, 439
Kzo9I GATC 2 cut(s) 37, 139
LpnPI CCDG 7 cut(s) 182, 209, 215, 253, 282, 355, 376
Lsp1109I GCAGC 1 cut(s) 236
MabI ACCWGGT 1 cut(s) 195
MaeI CTAG 3 cut(s) 54, 216, 386
MaeII ACGT 2 cut(s) 19, 123
MalI GATC 2 cut(s) 39, 141
MboI GATC 2 cut(s) 37, 139
MboII GAAGA 1 cut(s) 359
MflI RGATCY 1 cut(s) 139
MluCI AATT 1 cut(s) 219
MluI ACGCGT 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 6 cut(s) 26, 142, 216, 294, 369, 429
MroXI GAANNNNTTC 2 cut(s) 69, 292
MspI CCGG 2 cut(s) 202, 342
MspR9I CCNGG 2 cut(s) 197, 343
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 260
NciI CCSGG 1 cut(s) 343
NdeII GATC 2 cut(s) 37, 139
NlaIII CATG 2 cut(s) 158, 190
PdmI GAANNNNTTC 2 cut(s) 69, 292
PfeI GAWTC 2 cut(s) 161, 421
PkrI GCNGC 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 124
Psp1406I AACGTT 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspPI GGNCC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 3 cut(s) 115, 134, 320
RsaNI GTAC 3 cut(s) 114, 133, 319
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 2 cut(s) 37, 139
Sau96I GGNCC 1 cut(s) 199
ScaI AGTACT 1 cut(s) 320
ScrFI CCNGG 2 cut(s) 197, 343
SetI ASST 7 cut(s) 22, 126, 201, 217, 229, 255, 380
SexAI ACCWGGT 1 cut(s) 195
SinI GGWCC 1 cut(s) 199
Sse9I AATT 1 cut(s) 219
SspMI CTAG 3 cut(s) 54, 216, 386
StyD4I CCNGG 2 cut(s) 195, 341
TaaI ACNGT 2 cut(s) 184, 275
TaiI ACGT 2 cut(s) 22, 126
TasI AATT 1 cut(s) 219
TatI WGTACW 2 cut(s) 132, 318
TfiI GAWTC 2 cut(s) 161, 421
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 174, 371
VpaK11BI GGWCC 1 cut(s) 199
XbaI TCTAGA 1 cut(s) 385
XmnI GAANNNNTTC 2 cut(s) 69, 292
XspI CTAG 3 cut(s) 54, 216, 386
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.