Rroxscaffold_4G00326260

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000631
Physical Location & Seq
Forward (+)
58283599 .. 58283847
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00326260.1

Sequence Viewer

Length: 249 bp
ATGGCACACTTTTCGTTCCAAAGAGGCGACCAGGTCGAAGTCTACAGCAAACTCGAAGGCTTTCTTGGCTCGTACTACGAGGCCACCGTCGTCGCAAACATGGGCACCAACTATGTGATCCGGTACAACAACCTCATGGAGGAGTTCAATGACTCTATGCCGCTCAAAGAGACCGTCAAGGCGGCGGAGGTTCGACCATTGCCGTTGGAAATCGGGGAGGCTAATGCTATATATGCTTCATGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

82

Amino Acids

9.19

Weight (kDa)

4.63

Isoelectric Point (pI)

25.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 9 - 68 2.1e-15 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 163
AccI GTMKAC 1 cut(s) 42
AciI CCGC 3 cut(s) 161, 182, 185
AclWI GGATC 1 cut(s) 112
AfaI GTAC 2 cut(s) 74, 125
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 30
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 1 cut(s) 112
AoxI GGCC 1 cut(s) 81
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
Asp700I GAANNNNTTC 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 187
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 43
BisI GCNGC 2 cut(s) 161, 183
BlsI GCNGC 2 cut(s) 162, 184
Bme1390I CCNGG 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 107
BshFI GGCC 1 cut(s) 83
BshNI GGYRCC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 3 cut(s) 161, 182, 185
BspANI GGCC 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 164
BsrBI CCGCTC 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 197
BssMI GATC 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 2 cut(s) 88, 175
BstENI CCTNNNNNAGG 1 cut(s) 137
BstKTI GATC 1 cut(s) 120
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 117
BstMWI GCNNNNNNNGC 2 cut(s) 66, 233
BstNI CCWGG 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 107
BsuRI GGCC 1 cut(s) 83
CsiI ACCWGGT 1 cut(s) 30
Csp6I GTAC 2 cut(s) 73, 124
CviAII CATG 3 cut(s) 100, 136, 240
CviJI RGCY 4 cut(s) 60, 69, 83, 221
CviKI_1 RGCY 4 cut(s) 60, 69, 83, 221
CviQI GTAC 2 cut(s) 73, 124
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
EciI GGCGGA 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 30
FaeI CATG 3 cut(s) 103, 139, 243
FaiI YATR 8 cut(s) 101, 114, 137, 158, 230, 232, 234, 241
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FatI CATG 3 cut(s) 99, 135, 239
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 161, 183
Fsp4HI GCNGC 2 cut(s) 161, 183
GluI GCNGC 2 cut(s) 161, 183
HaeIII GGCC 1 cut(s) 83
HapII CCGG 1 cut(s) 121
Hin1II CATG 3 cut(s) 103, 139, 243
HinfI GANTC 1 cut(s) 152
HpaII CCGG 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 2 cut(s) 92, 95
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 88, 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 233
Hsp92II CATG 3 cut(s) 103, 139, 243
Kzo9I GATC 1 cut(s) 117
LpnPI CCDG 3 cut(s) 17, 44, 134
MabI ACCWGGT 1 cut(s) 30
MalI GATC 1 cut(s) 119
MbiI CCGCTC 1 cut(s) 163
MboI GATC 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 107
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 6 cut(s) 17, 73, 133, 143, 181, 211
MroXI GAANNNNTTC 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 244
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 66, 233
NdeII GATC 1 cut(s) 117
NlaIII CATG 3 cut(s) 103, 139, 243
NlaIV GGNNCC 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 60
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 2 cut(s) 162, 184
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 2 cut(s) 74, 125
RsaNI GTAC 2 cut(s) 73, 124
RseI CAYNNNNRTG 1 cut(s) 244
SatI GCNGC 2 cut(s) 161, 183
Sau3AI GATC 1 cut(s) 117
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 1 cut(s) 107
SetI ASST 3 cut(s) 36, 135, 192
SexAI ACCWGGT 1 cut(s) 30
SfcI CTRYAG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 244
SsiI CCGC 3 cut(s) 161, 182, 185
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 88, 175
TaqI TCGA 3 cut(s) 36, 54, 193
TauI GCSGC 2 cut(s) 163, 185
TspDTI ATGAA 1 cut(s) 228
Tth111I GACNNNGTC 1 cut(s) 32
XagI CCTNNNNNAGG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.