Rw6G028080

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000631
Physical Location & Seq
Reverse (-)
51979794 .. 51980252
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028080.1

Sequence Viewer

Length: 417 bp
ATGGCTTTTCACTCAAAACGTTCTTTCCAAAGAGGAGATCAAGTGGAAGTGTCTAGCAATATGGAAGGGTTTCTTGGCTCATTTTGGCGAGCAACCATAGTTGCAAATATGGGTACAAACTACGTGGTTGAGTACAAAGATCTCGTGGAGGAACATGATGAATCTACACTTCTGAGAGAGACTGTCATGGCGAACCAGGTCCGGCCTCTGCCGCCTAGAATTGCGGCTTCTCGGTTTTCCGATAATAACAAGGTTGATGCGGAAGGGTCTGATAAGTACTATGTTTTCTTTGAAACCACCGGGGAAGAGATTGCTTACCCGATTTCGCAGTTGAGGTTTCATCTAGACTGGCGCAATGGGAAGTGGATTTCTCACAAGAAGCCTTCCAAAAAGAGGCGCAAGATGGATGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

138

Amino Acids

16.12

Weight (kDa)

6.92

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 12 - 72 6.1e-18 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 212, 224, 260
AclI AACGTT 1 cut(s) 19
AfaI GTAC 3 cut(s) 115, 134, 278
AfiI CCNNNNNNNGG 1 cut(s) 393
AgsI TTSAA 1 cut(s) 293
AjnI CCWGG 1 cut(s) 195
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
Alw26I GTCTC 1 cut(s) 173
AoxI GGCC 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 69
AspLEI GCGC 2 cut(s) 354, 399
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 301
AvaII GGWCC 1 cut(s) 199
BauI CACGAG 1 cut(s) 143
BccI CCATC 1 cut(s) 397
BciT130I CCWGG 1 cut(s) 197
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 3 cut(s) 54, 216, 344
BglII AGATCT 1 cut(s) 139
BisI GCNGC 2 cut(s) 212, 225
BlsI GCNGC 2 cut(s) 213, 226
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 2 cut(s) 197, 301
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 197, 301
BmsI GCATC 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 301
BsaAI YACGTR 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 1 cut(s) 393
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 1 cut(s) 48
BshFI GGCC 1 cut(s) 205
BsiSI CCGG 2 cut(s) 202, 300
BslI CCNNNNNNNGG 1 cut(s) 393
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 205
Bsp143I GATC 2 cut(s) 37, 139
BspACI CCGC 3 cut(s) 212, 224, 260
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 37, 139
BssSI CACGAG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 300
BstBAI YACGTR 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 412
BstHHI GCGC 2 cut(s) 354, 399
BstKTI GATC 2 cut(s) 40, 142
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 37, 139
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 195, 299
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 412
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 2 cut(s) 354, 399
Cfr13I GGNCC 1 cut(s) 199
CsiI ACCWGGT 1 cut(s) 195
Csp6I GTAC 3 cut(s) 114, 133, 277
CspCI CAANNNNNGTGG 2 cut(s) 105, 140
CviAII CATG 2 cut(s) 155, 187
CviJI RGCY 5 cut(s) 5, 78, 205, 227, 382
CviKI_1 RGCY 5 cut(s) 5, 78, 205, 227, 382
CviQI GTAC 3 cut(s) 114, 133, 277
DdeI CTNAG 1 cut(s) 173
DpnI GATC 2 cut(s) 39, 141
DpnII GATC 2 cut(s) 37, 139
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 158, 190
FaiI YATR 6 cut(s) 62, 98, 110, 156, 188, 282
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 2 cut(s) 154, 186
Fnu4HI GCNGC 2 cut(s) 212, 225
Fsp4HI GCNGC 2 cut(s) 212, 225
FspBI CTAG 3 cut(s) 54, 216, 344
GlaI GCGC 2 cut(s) 353, 398
GluI GCNGC 2 cut(s) 212, 225
HaeIII GGCC 1 cut(s) 205
HapII CCGG 2 cut(s) 202, 300
HhaI GCGC 2 cut(s) 354, 399
Hin1II CATG 2 cut(s) 158, 190
Hin6I GCGC 2 cut(s) 352, 397
HinP1I GCGC 2 cut(s) 352, 397
HinfI GANTC 1 cut(s) 161
HpaII CCGG 2 cut(s) 202, 300
Hpy188I TCNGA 3 cut(s) 174, 241, 271
Hpy188III TCNNGA 1 cut(s) 344
HpyAV CCTTC 3 cut(s) 59, 257, 393
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 2 cut(s) 19, 123
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 2 cut(s) 19, 123
Hsp92II CATG 2 cut(s) 158, 190
HspAI GCGC 2 cut(s) 352, 397
Kzo9I GATC 2 cut(s) 37, 139
LpnPI CCDG 5 cut(s) 182, 209, 215, 313, 334
LweI GCATC 1 cut(s) 247
MabI ACCWGGT 1 cut(s) 195
MaeI CTAG 3 cut(s) 54, 216, 344
MaeII ACGT 2 cut(s) 19, 123
MalI GATC 2 cut(s) 39, 141
MboI GATC 2 cut(s) 37, 139
MboII GAAGA 1 cut(s) 317
MflI RGATCY 1 cut(s) 139
MluCI AATT 1 cut(s) 219
MnlI CCTC 5 cut(s) 26, 142, 216, 327, 387
MroXI GAANNNNTTC 1 cut(s) 69
MspI CCGG 2 cut(s) 202, 300
MspR9I CCNGG 2 cut(s) 197, 301
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 301
NdeII GATC 2 cut(s) 37, 139
NlaIII CATG 2 cut(s) 158, 190
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 2 cut(s) 213, 226
Ppu21I YACGTR 1 cut(s) 124
Psp1406I AACGTT 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspPI GGNCC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 139
RsaI GTAC 3 cut(s) 115, 134, 278
RsaNI GTAC 3 cut(s) 114, 133, 277
SatI GCNGC 2 cut(s) 212, 225
Sau3AI GATC 2 cut(s) 37, 139
Sau96I GGNCC 1 cut(s) 199
ScaI AGTACT 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 197, 301
SetI ASST 5 cut(s) 22, 126, 201, 255, 338
SexAI ACCWGGT 1 cut(s) 195
SfaNI GCATC 1 cut(s) 247
SinI GGWCC 1 cut(s) 199
Sse9I AATT 1 cut(s) 219
SsiI CCGC 3 cut(s) 212, 224, 260
SspMI CTAG 3 cut(s) 54, 216, 344
StyD4I CCNGG 2 cut(s) 195, 299
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 2 cut(s) 22, 126
TasI AATT 1 cut(s) 219
TatI WGTACW 2 cut(s) 132, 276
TauI GCSGC 2 cut(s) 214, 227
TfiI GAWTC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 174, 329
VpaK11BI GGWCC 1 cut(s) 199
XbaI TCTAGA 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 3 cut(s) 54, 216, 344
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.