RLG00000006528

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000631
Physical Location & Seq
Forward (+)
8152139 .. 8152686
548 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006528

Sequence Viewer

Length: 489 bp
ATGCAGGGCCCGTTGGCAAGCTCTGTGGCTCAGCCGGAGGCCATACTGAAGTGGCTTCAGAAGGAAATGGGGTACCGACCCTTGGGGCCTTACGGCGGCGTCGCCTCCAGCAAATCCCAATTGCCTTCAATTGACGCCGTGAGGAAGATTTGTAGGAGGAATTCAACGACTCTATGCCTCTCAAAGAGACCGTCAAGGCGACGGAGGATCGATGCTTACGATCTTGATGGGTGGTGGGTTGGTACGATTTTGTCGGAGAAAAATGGGTCTAGGCATCAGTCTGTGTTCTTCGAGACTACTGGGCAAGAGCTAAATTACCTAGTTTTGAAGCTGAGGGTTCATCAAGATTGGCGCAATGGAAAATGGTGTCATCCAAGAAGACAAAGAGAAATGTTGTGCGATGAAACTGCGACGTTATGGGCTTCTGATTGTTCTGATCTTGTTGGCTTTAGTGGTATGTACTTTGTTTCAGACCAAGAAACAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

163

Amino Acids

18.56

Weight (kDa)

9.22

Isoelectric Point (pI)

59.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06340
fragaria_vesca FvH4_2g23230 FvH4_6g05270 FvH4_6g14470
malus_domestica MD04G1194400.v1.1 MD04G1194500.v1.1 MD04G1194700.v1.1 MD04G1194900.v1.1 MD04G1199300.v1.1 MD12G1207100.v1.1
prunus_persica Prupe.6G295700_v2.0.a1 Prupe.6G314400_v2.0.a1 Prupe.6G314500_v2.0.a1
pyrus_communis pycom04g17200 pycom12g19490
rosa_chinensis RchiOBHm_Chr1g0336721 RchiOBHm_Chr3g0454011 RchiOBHm_Chr3g0484961 RchiOBHm_Chr6g0290501 RchiOBHm_Chr6g0290521 RchiOBHm_Chr6g0290541 RchiOBHm_Chr7g0235761
rosa_laevigata RLG00000001142 RLG00000006528 RLG00000012205 RLG00000012207 RLG00000012209 RLG00000024490 RLG00000025490 RLG00000035862
rosa_multiflora Rmu_co8053086.1_g000001 Rmu_sc0000679.1_g000031 Rmu_sc0001089.1_g000020 Rmu_sc0001302.1_g000001 Rmu_sc0002477.1_g000009 Rmu_sc0002724.1_g000039 Rmu_sc0002890.1_g000020 Rmu_sc0002890.1_g000022 Rmu_sc0003556.1_g000036 Rmu_sc0009295.1_g000012 Rmu_sc0011632.1_g000017 Rmu_sc0019265.1_g000002
rosa_roxburghii Rroxscaffold_4G00326260 Rroxscaffold_6G00413590 Rroxscaffold_7G00176960 Rroxscaffold_7G00176980 Rroxscaffold_7G00177000
rosa_rugosa Rorug06G0212900
rosa_samantha Rh1AG103800 Rh1BG086300 Rh2AG280500 Rh2AG280600 Rh3AG054900 Rh3AG136100 Rh3BG056500 Rh3BG158000 Rh3CG055700 Rh3CG157800 Rh3DG057000 Rh3DG158600 Rh6AG323500 Rh6AG323700 Rh6BG330700 Rh6BG330900 Rh6BG331100 Rh6BG413200 Rh6CG337000 Rh6CG337100 Rh6CG337300 Rh6DG323900 Rh6DG324100 Rh6DG324300 Rh7DG436300
rosa_wichuraiana Rw3G004220 Rw3G012920 Rw6G028060 Rw6G028080 Rw7G037160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 72
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 2 cut(s) 41, 68
AcyI GRCGYC 2 cut(s) 99, 135
AfaI GTAC 3 cut(s) 74, 244, 461
AfiI CCNNNNNNNGG 2 cut(s) 82, 95
AgsI TTSAA 3 cut(s) 129, 165, 328
AluBI AGCT 3 cut(s) 21, 310, 331
AluI AGCT 3 cut(s) 21, 310, 331
Alw26I GTCTC 2 cut(s) 181, 287
AlwI GGATC 1 cut(s) 215
AoxI GGCC 3 cut(s) 7, 39, 86
ApaI GGGCCC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 160
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
Asp718I GGTACC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 3 cut(s) 7, 8, 86
BaeGI GKGCMC 1 cut(s) 11
BanI GGYRCC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 385
BbvCI CCTCAGC 1 cut(s) 332
BccI CCATC 1 cut(s) 221
BceAI ACGGC 2 cut(s) 109, 122
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BcoDI GTCTC 2 cut(s) 181, 287
BfaI CTAG 2 cut(s) 270, 320
BisI GCNGC 1 cut(s) 97
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 7, 8, 86
BmiI GGNNCC 3 cut(s) 9, 74, 87
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 202, 283
BmuI ACTGGG 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 385
BpmI CTGGAG 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 332
Bpu1102I GCTNAGC 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 210
BsaHI GRCGYC 2 cut(s) 99, 135
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 95
Bse1I ACTGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 361
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 2 cut(s) 82, 95
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 44, 323
BseNI ACTGG 1 cut(s) 304
BseSI GKGCMC 1 cut(s) 11
BshFI GGCC 3 cut(s) 9, 41, 88
BshNI GGYRCC 1 cut(s) 72
BshVI ATCGAT 1 cut(s) 210
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 82, 95
BsmAI GTCTC 2 cut(s) 181, 287
BsnI GGCC 3 cut(s) 9, 41, 88
Bso31I GGTCTC 1 cut(s) 181
Bsp120I GGGCCC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 3 cut(s) 207, 220, 436
Bsp1720I GCTNAGC 1 cut(s) 30
BspACI CCGC 1 cut(s) 96
BspANI GGCC 3 cut(s) 9, 41, 88
BspCNI CTCAG 2 cut(s) 43, 324
BspDI ATCGAT 1 cut(s) 210
BspLI GGNNCC 3 cut(s) 9, 74, 87
BspPI GGATC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 207, 220, 436
BssNI GRCGYC 2 cut(s) 99, 135
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 192
BstACI GRCGYC 2 cut(s) 99, 135
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 30, 332
BstF5I GGATG 1 cut(s) 370
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 3 cut(s) 210, 223, 439
BstMAI GTCTC 2 cut(s) 181, 287
BstMBI GATC 3 cut(s) 207, 220, 436
BstSLI GKGCMC 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 385
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 3 cut(s) 9, 41, 88
BsuTUI ATCGAT 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 1 cut(s) 370
Cac8I GCNNGC 1 cut(s) 19
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 3 cut(s) 7, 8, 86
ClaI ATCGAT 1 cut(s) 210
CseI GACGC 2 cut(s) 88, 143
Csp6I GTAC 3 cut(s) 73, 243, 460
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviQI GTAC 3 cut(s) 73, 243, 460
DdeI CTNAG 2 cut(s) 30, 332
DpnI GATC 3 cut(s) 209, 222, 438
DpnII GATC 3 cut(s) 207, 220, 436
Eco130I CCWWGG 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 181
Eco57I CTGAAG 2 cut(s) 41, 68
EcoO109I RGGNCCY 2 cut(s) 7, 86
EcoRI GAATTC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 81
FaiI YATR 4 cut(s) 44, 175, 418, 458
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 1 cut(s) 357
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 2 cut(s) 270, 320
GlaI GCGC 1 cut(s) 353
GluI GCNGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 3 cut(s) 9, 41, 88
HapII CCGG 1 cut(s) 35
HgaI GACGC 2 cut(s) 88, 143
HhaI GCGC 1 cut(s) 354
Hin1I GRCGYC 2 cut(s) 99, 135
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 35
Hpy188I TCNGA 5 cut(s) 60, 256, 427, 436, 472
Hpy188III TCNNGA 3 cut(s) 224, 292, 344
Hpy99I CGWCG 3 cut(s) 104, 204, 415
HpyAV CCTTC 2 cut(s) 55, 135
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 30, 332
HpySE526I ACGT 1 cut(s) 413
Hsp92I GRCGYC 2 cut(s) 99, 135
HspAI GCGC 1 cut(s) 352
KpnI GGTACC 1 cut(s) 76
Kzo9I GATC 3 cut(s) 207, 220, 436
LpnPI CCDG 3 cut(s) 48, 121, 285
LweI GCATC 2 cut(s) 202, 283
MaeI CTAG 2 cut(s) 270, 320
MaeII ACGT 1 cut(s) 413
MalI GATC 3 cut(s) 209, 222, 438
MboI GATC 3 cut(s) 207, 220, 436
MboII GAAGA 3 cut(s) 157, 280, 390
MfeI CAATTG 2 cut(s) 119, 129
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 5 cut(s) 119, 129, 160, 313, 484
MlyI GAGTC 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 7 cut(s) 31, 115, 135, 150, 188, 198, 327
MspI CCGG 1 cut(s) 35
MunI CAATTG 2 cut(s) 119, 129
NdeII GATC 3 cut(s) 207, 220, 436
NlaIV GGNNCC 3 cut(s) 9, 74, 87
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspN4I GGNNCC 3 cut(s) 9, 74, 87
PspOMI GGGCCC 1 cut(s) 7
PspPI GGNCC 3 cut(s) 7, 8, 86
RsaI GTAC 3 cut(s) 74, 244, 461
RsaNI GTAC 3 cut(s) 73, 243, 460
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 3 cut(s) 207, 220, 436
Sau96I GGNCC 3 cut(s) 7, 8, 86
SchI GAGTC 1 cut(s) 163
SduI GDGCHC 1 cut(s) 11
SetI ASST 5 cut(s) 23, 312, 321, 333, 416
SfaNI GCATC 2 cut(s) 202, 283
Sse9I AATT 5 cut(s) 119, 129, 160, 313, 484
SsiI CCGC 1 cut(s) 96
SspMI CTAG 2 cut(s) 270, 320
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 192
TaiI ACGT 1 cut(s) 416
TaqI TCGA 2 cut(s) 210, 291
TasI AATT 5 cut(s) 119, 129, 160, 313, 484
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 329, 417
TspGWI ACGGA 1 cut(s) 217
XapI RAATTY 1 cut(s) 160
XspI CTAG 2 cut(s) 270, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.