Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000423

Physical Location & Seq

Genomic Coordinates Forward (+)

28714765 .. 28717910

Gene Structure 3146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGTGAAGCTTTTGGAGCTGTTCATAACTTCATCAAAACCAGTCGTTGAGATTCTGTTGATAACATCAGTCGGATTTTATATGGCTCTCGATGGAGTCAATCTTCTTGGTCATGATGCTCGTAAATATCTGAACAACATTGTCTTCTATGTGTTTAGTCCTTCGCTTATTGGAAGCCGTTTAGCTGATAGTGTTACATACGAAAGCTTGGTCAAAATGTGGTTCATGCCGGTGAATGTTCTGCTTACATTCATCATTGGTTCATTACTTGGCTGGATTGTTATTGTCATCACTAAGCCTCCTTCACACCTTCGTGGTCTCATTCTTGGTTGTTGTGCTGCTGGGAATTTGGGGAATATGCCACTGATTATAATCCCAGCTGTTTGTAAAGAAAAAGGAGGTCCCTTTGGAGATCCTGAGAGTTGCCAGAAATATGGAATGGGTTATGTTGCTCTCTCCATGGCTATGGGATCTATTTACATATGGACTTATGTATACAATCTTATGCGTGTGCTATCGAACTCTCCCGTTGAAACCCCTCCCTCTGTTGAATCCAACTACGACAGCTACAAAGTTCCCCTTATTTCTTCCAAGGAAGAAGAAAACAACCAAAAGGCTGGGAGGTGGGAAAAAGTCAAGCGGAGATTGGTTTCACTGTCACAAAAAGTCAACCTTAAGACAATTTTTGCTCCATCAACTATTGCTGCGATGATTGCACTTGTGATCGGGCTCATTACTCCTTTAAGGAAGCTAATAATCGGCACGGAAGCTCCTCTCCGGGTGCTTCAAGACTCAGTAACTCTAGTGGGAGATGGGGCAGTTCCTGCAATGACCATGATTATAGGAGGAAACCTACTCAAAGGTTTGAGGAGTTCAGGAATGAAAATGTCCAGTATTATCGGCGTCTTGGTTGCGCGTTACGTTTTACTGCCTATGAGCGGTGTTTTAATCGTAAGAGGAGCATATAAGTTGGATTTAGTTACATCAGAGCCCTTATACCAATTCGTTCTTCTTCTTCAATATGCTGTCCCACCAGCCATGAATCTAGGTACAATTACTCAGTTATTTGGAACTGGGGAGAGTGAATGCTCAGTGATTATGCTCTGGACTTACTCTTTGGCTTCGATTGCACTCACTGTTTGGCCAACATTCTTCATGTGGCTTGTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

390

Amino Acids

42.63

Weight (kDa)

9.13

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	12 - 381	4.5e-88	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca	FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica	MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica	Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis	pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis	RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata	RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora	Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa	Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha	Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana	Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccBSI	CCGCTC	1 cut(s)	939
AccI	GTMKAC	1 cut(s)	495
AccII	CGCG	1 cut(s)	916
AciI	CCGC	2 cut(s)	640, 939
AclWI	GGATC	2 cut(s)	407, 478
AcoI	YGGCCR	1 cut(s)	1142
AcsI	RAATTY	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	903
AfaI	GTAC	1 cut(s)	1051
AfiI	CCNNNNNNNGG	1 cut(s)	938
AflII	CTTAAG	1 cut(s)	674
AgsI	TTSAA	4 cut(s)	533, 551, 788, 1019
AjuI	GAANNNNNNNTTGG	2 cut(s)	993, 1025
AleI	CACNNNNGTG	1 cut(s)	312
AluBI	AGCT	9 cut(s)	10, 19, 185, 207, 380, 567, 751, 770, 1169
AluI	AGCT	9 cut(s)	10, 19, 185, 207, 380, 567, 751, 770, 1169
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	2 cut(s)	407, 478
AlwNI	CAGNNNCTG	1 cut(s)	824
AoxI	GGCC	1 cut(s)	1142
ApeKI	GCWGC	2 cut(s)	338, 704
ApoI	RAATTY	1 cut(s)	346
ArsI	GACNNNNNNTTYG	4 cut(s)	195, 227, 1099, 1131
AspLEI	GCGC	1 cut(s)	916
AspS9I	GGNCC	1 cut(s)	401
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	2 cut(s)	16, 244
AvaII	GGWCC	1 cut(s)	401
BalI	TGGCCA	1 cut(s)	1144
BanII	GRGCYC	2 cut(s)	732, 993
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	325, 691
BccI	CCATC	3 cut(s)	86, 700, 806
BceAI	ACGGC	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	779
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	2 cut(s)	803, 1046
BfrI	CTTAAG	1 cut(s)	674
BisI	GCNGC	2 cut(s)	339, 705
BlsI	GCNGC	2 cut(s)	340, 706
Bme1390I	CCNGG	1 cut(s)	779
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	779
BmrI	ACTGGG	1 cut(s)	1083
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	1083
BpiI	GAAGAC	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	779
BsaBI	GATNNNNATC	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	903
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	459, 591
BsaXI	ACNNNNNCTCC	4 cut(s)	283, 313, 754, 784
Bsc4I	CCNNNNNNNGG	1 cut(s)	938
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	3 cut(s)	41, 891, 1078
Bse3DI	GCAATG	1 cut(s)	834
Bse8I	GATNNNNATC	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	459, 591
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	1 cut(s)	938
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	4 cut(s)	408, 807, 1073, 1104
BseNI	ACTGG	3 cut(s)	41, 891, 1078
BseRI	GAGGAG	3 cut(s)	762, 883, 972
BseXI	GCAGC	2 cut(s)	325, 691
BseYI	CCCAGC	3 cut(s)	341, 376, 617
Bsh1236I	CGCG	1 cut(s)	916
BshFI	GGCC	1 cut(s)	1144
BsiSI	CCGG	2 cut(s)	230, 778
BslFI	GGGAC	2 cut(s)	387, 1013
BslI	CCNNNNNNNGG	1 cut(s)	938
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	2 cut(s)	387, 1013
BsmI	GAATGC	1 cut(s)	1091
BsnI	GGCC	1 cut(s)	1144
Bso31I	GGTCTC	1 cut(s)	323
Bsp1286I	GDGCHC	2 cut(s)	732, 993
Bsp143I	GATC	3 cut(s)	412, 470, 723
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	2 cut(s)	640, 939
BspANI	GGCC	1 cut(s)	1144
BspCNI	CTCAG	4 cut(s)	409, 806, 1072, 1103
BspFNI	CGCG	1 cut(s)	916
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	2 cut(s)	407, 478
BspTI	CTTAAG	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	323
BsrBI	CCGCTC	1 cut(s)	939
BsrDI	GCAATG	1 cut(s)	834
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	3 cut(s)	41, 891, 1078
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	459, 591
BssMI	GATC	3 cut(s)	412, 470, 723
BssNAI	GTATAC	1 cut(s)	496
BssNI	GRCGYC	1 cut(s)	903
BssT1I	CCWWGG	2 cut(s)	459, 591
Bst1107I	GTATAC	1 cut(s)	496
Bst4CI	ACNGT	2 cut(s)	657, 1138
BstACI	GRCGYC	1 cut(s)	903
BstAFI	CTTAAG	1 cut(s)	674
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstDEI	CTNAG	6 cut(s)	294, 417, 793, 1059, 1090, 1170
BstDSI	CCRYGG	1 cut(s)	459
BstFNI	CGCG	1 cut(s)	916
BstHHI	GCGC	1 cut(s)	916
BstKTI	GATC	3 cut(s)	415, 473, 726
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	3 cut(s)	412, 470, 723
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 713, 824, 1127
BstSCI	CCNGG	1 cut(s)	777
BstUI	CGCG	1 cut(s)	916
BstV1I	GCAGC	2 cut(s)	325, 691
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	2 cut(s)	412, 470
BstXI	CCANNNNNNTGG	3 cut(s)	434, 466, 617
BstYI	RGATCY	2 cut(s)	412, 470
BstZ17I	GTATAC	1 cut(s)	496
BsuRI	GGCC	1 cut(s)	1144
BtgI	CCRYGG	1 cut(s)	459
BtgZI	GCGATG	1 cut(s)	722
BtsIMutI	CAGTG	4 cut(s)	362, 653, 1098, 1134
CaiI	CAGNNNCTG	1 cut(s)	824
CciI	TCATGA	1 cut(s)	112
CfoI	GCGC	1 cut(s)	916
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	892
Csp6I	GTAC	1 cut(s)	1050
CviAII	CATG	6 cut(s)	113, 226, 460, 835, 1039, 1156
CviQI	GTAC	1 cut(s)	1050
DdeI	CTNAG	6 cut(s)	294, 417, 793, 1059, 1090, 1170
DpnI	GATC	3 cut(s)	414, 472, 725
DpnII	GATC	3 cut(s)	412, 470, 723
EaeI	YGGCCR	1 cut(s)	1142
Eco130I	CCWWGG	2 cut(s)	459, 591
Eco24I	GRGCYC	2 cut(s)	732, 993
Eco31I	GGTCTC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	401
EcoT14I	CCWWGG	2 cut(s)	459, 591
EcoT38I	GRGCYC	2 cut(s)	732, 993
ErhI	CCWWGG	2 cut(s)	459, 591
FaeI	CATG	6 cut(s)	116, 229, 463, 838, 1042, 1159
FalI	AAGNNNNNCTT	4 cut(s)	564, 596, 657, 689
FaqI	GGGAC	2 cut(s)	387, 1013
FatI	CATG	6 cut(s)	112, 225, 459, 834, 1038, 1155
FauNDI	CATATG	1 cut(s)	482
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	2 cut(s)	339, 705
FriOI	GRGCYC	2 cut(s)	732, 993
Fsp4HI	GCNGC	2 cut(s)	339, 705
FspBI	CTAG	2 cut(s)	803, 1046
GlaI	GCGC	1 cut(s)	915
GluI	GCNGC	2 cut(s)	339, 705
GsaI	CCCAGC	3 cut(s)	345, 380, 621
HaeIII	GGCC	1 cut(s)	1144
HapII	CCGG	2 cut(s)	230, 778
HgaI	GACGC	1 cut(s)	892
HhaI	GCGC	1 cut(s)	916
Hin1I	GRCGYC	1 cut(s)	903
Hin1II	CATG	6 cut(s)	116, 229, 463, 838, 1042, 1159
Hin6I	GCGC	1 cut(s)	914
HinP1I	GCGC	1 cut(s)	914
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	2 cut(s)	8, 205
HinfI	GANTC	5 cut(s)	52, 96, 551, 791, 1042
HpaII	CCGG	2 cut(s)	230, 778
HphI	GGTGA	2 cut(s)	16, 244
Hpy166II	GTNNAC	2 cut(s)	496, 670
Hpy188I	TCNGA	3 cut(s)	74, 132, 988
Hpy188III	TCNNGA	6 cut(s)	89, 113, 416, 788, 876, 1105
Hpy8I	GTNNAC	2 cut(s)	496, 670
HpyAV	CCTTC	3 cut(s)	171, 312, 320
HpyCH4III	ACNGT	2 cut(s)	657, 1138
HpyCH4IV	ACGT	1 cut(s)	921
HpyCH4V	TGCA	3 cut(s)	716, 827, 1130
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 713, 824, 1127
HpyF3I	CTNAG	6 cut(s)	294, 417, 793, 1059, 1090, 1170
HpySE526I	ACGT	1 cut(s)	921
Hsp92I	GRCGYC	1 cut(s)	903
Hsp92II	CATG	6 cut(s)	116, 229, 463, 838, 1042, 1159
HspAI	GCGC	1 cut(s)	914
Kzo9I	GATC	3 cut(s)	412, 470, 723
LmnI	GCTCC	4 cut(s)	16, 694, 775, 959
Lsp1109I	GCAGC	2 cut(s)	325, 691
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	803, 1046
MaeII	ACGT	1 cut(s)	921
MaeIII	GTNAC	5 cut(s)	193, 657, 796, 917, 979
MalI	GATC	3 cut(s)	414, 472, 725
MbiI	CCGCTC	1 cut(s)	939
MboI	GATC	3 cut(s)	412, 470, 723
MboII	GAAGA	9 cut(s)	95, 136, 579, 608, 611, 1001, 1004, 1007, 1144
MflI	RGATCY	2 cut(s)	412, 470
MhlI	GDGCHC	2 cut(s)	732, 993
MlsI	TGGCCA	1 cut(s)	1144
MluCI	AATT	4 cut(s)	346, 681, 1001, 1053
MluNI	TGGCCA	1 cut(s)	1144
MlyI	GAGTC	2 cut(s)	105, 785
MmeI	TCCRAC	3 cut(s)	52, 579, 951
MnlI	CCTC	9 cut(s)	309, 392, 549, 553, 615, 783, 839, 861, 950
Mox20I	TGGCCA	1 cut(s)	1144
MscI	TGGCCA	1 cut(s)	1144
MseI	TTAA	3 cut(s)	675, 743, 947
MslI	CAYNNNNRTG	3 cut(s)	230, 312, 464
Msp20I	TGGCCA	1 cut(s)	1144
MspA1I	CMGCKG	1 cut(s)	380
MspCI	CTTAAG	1 cut(s)	674
MspI	CCGG	2 cut(s)	230, 778
MspR9I	CCNGG	1 cut(s)	779
Mva1269I	GAATGC	1 cut(s)	1091
MvnI	CGCG	1 cut(s)	916
MwoI	GCNNNNNNNGC	4 cut(s)	16, 713, 824, 1127
NciI	CCSGG	1 cut(s)	779
NcoI	CCATGG	1 cut(s)	459
NdeI	CATATG	1 cut(s)	482
NdeII	GATC	3 cut(s)	412, 470, 723
NlaIII	CATG	6 cut(s)	116, 229, 463, 838, 1042, 1159
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	1 cut(s)	657
OliI	CACNNNNGTG	1 cut(s)	312
PagI	TCATGA	1 cut(s)	112
PctI	GAATGC	1 cut(s)	1091
PfeI	GAWTC	3 cut(s)	52, 551, 1042
PkrI	GCNGC	2 cut(s)	340, 706
PleI	GAGTC	2 cut(s)	104, 785
PpsI	GAGTC	2 cut(s)	104, 785
PpuMI	RGGWCCY	1 cut(s)	401
PsiI	TTATAA	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	401
PspFI	CCCAGC	3 cut(s)	341, 376, 617
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	401
PspPPI	RGGWCCY	1 cut(s)	401
PstNI	CAGNNNCTG	1 cut(s)	824
PsuI	RGATCY	2 cut(s)	412, 470
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	1051
RsaNI	GTAC	1 cut(s)	1050
RseI	CAYNNNNRTG	3 cut(s)	230, 312, 464
SaqAI	TTAA	3 cut(s)	675, 743, 947
SatI	GCNGC	2 cut(s)	339, 705
Sau3AI	GATC	3 cut(s)	412, 470, 723
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	2 cut(s)	105, 785
ScrFI	CCNGG	1 cut(s)	779
SduI	GDGCHC	2 cut(s)	732, 993
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	3 cut(s)	230, 312, 464
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	4 cut(s)	346, 681, 1001, 1053
SsiI	CCGC	2 cut(s)	640, 939
SspMI	CTAG	2 cut(s)	803, 1046
StyD4I	CCNGG	1 cut(s)	777
StyI	CCWWGG	2 cut(s)	459, 591
TaaI	ACNGT	2 cut(s)	657, 1138
TaiI	ACGT	1 cut(s)	924
TaqI	TCGA	3 cut(s)	90, 518, 1124
TasI	AATT	4 cut(s)	346, 681, 1001, 1053
TfiI	GAWTC	3 cut(s)	52, 551, 1042
Tru1I	TTAA	3 cut(s)	675, 743, 947
Tru9I	TTAA	3 cut(s)	675, 743, 947
TscAI	CASTG	4 cut(s)	369, 660, 1098, 1141
TseFI	GTSAC	1 cut(s)	657
TseI	GCWGC	2 cut(s)	338, 704
Tsp45I	GTSAC	1 cut(s)	657
TspDTI	ATGAA	8 cut(s)	13, 21, 214, 241, 252, 896, 1055, 1144
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	4 cut(s)	369, 660, 1098, 1141
Vha464I	CTTAAG	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	495
XspI	CTAG	2 cut(s)	803, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.