Rorug07G0167100

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000423
Physical Location & Seq
Forward (+)
13377786 .. 13386458
8673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0167100.1

Sequence Viewer

Length: 1431 bp
ATGAAGCTCAAAGTATACGTGGATAGGATGTCACAACCTTCGCGTGCAATTTTGATCTTCTGCAAGGTCAATGGTATAGAATTCGAGGAGGTGCAAATCAACCTAGCCAAAAGCCAGCAAAAGTCACCTGATTTCAAAAAAATAAACCCTATGGGACAAGTTCCGGCTATCGCTGATGGGAGGTTTAATCTGTTTGAAAGTCATGCAATTCTTGTCTATCTTGCTTGTGCGTTTCCTGGAGTAGCAGATCACTGGTATCCTGCTGATCTTTTCAGGAGAGCTAAAATCAACTCAGTGTTGGATTGGCACCACTCTAACTTACGCCGTGGTGCAATGACATATGTTCTAAATACCGTACTTGCACCTGTGTTTGGACTTCCATTGAATCCACAAGCAGCTGCTGAAGCTGAGAAACTTCTGTCCTCCTCTTTGTCAAAAATTGAGTCTATTTGGCTCAAAGGGAATGGAAAGTTCTTGTTGGGTGGCTTTCAACCATCCATAGCAGATCTCAGCCTGGTTTGTGAAATTATGCAACTTGAGCTTTTGGACGAGAATGACCGCAGTCGGATACTTGGCCCACACAAGAAAGTTCTAGAGTGGATTGAGAATACAAAAAATGCGACAGGACCTCACTTTGAAGAAGTACATCAAGTCCTCTACAGAGCCAAAACGAGATTTCAAGAGCAGCGGTCGATGGGAGGAAACAACACTAATTTGAGCAAAAGATTGGGTTTCCCTTCAAAGATGGTCAATGGTATAGAATTCGAGGAGGTGCAAATCAGCCTAGCCAAACGCCAGCAAATGTCACCTGATTTCAAAAAAATAAACCCTATGGGACAAGTTCCGGCTATTGCTGATGGGAGCTTTAATCTGTTTGAGAGTCATGCAATTCTTGTCTATCTTGCTTGTGCGTTTCCTGGAGTAGCAGATCATTGGTATCCTGCTGATCTTTTCAGGAGAGCTAAAATCAACTCAATGTTGGATTGGCACCACTCTAACTTACGCCATGGTGCATCAACATATGTTCTAAATACTCTACTTGCACCTTTTCTTGGACTTCAATTGAATCCACAAGCAGCTGCTGAAGCTGAGAAACTTTTGTCCTCCTCTTTGTCAAAAATTGAGTCTATTTGGCTCAAAGGGAATGGAAAGTTCTTGTTGGGTGGCTTTCAACCATCCATAGCAGATCTCAGCCTGGTTTGTGAAATTATGCAACTTGAGCTTTTGGACGAGAACGACCGCAGTCGGATACTTGGCCCGCACAAGAAAGTTCTAGAGTGGATTGAGAATACAAAAAATGCGACGAGACCTCACTTTGAAGAAGTACATCAAGTCCTCTACAGAGCCAAAACGAGATTTCAAGAGCAGCGGTCGACGGGAGCAAACAACACTAATTCGAGCAAAAGATTGGGTTTGCCTTCAAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

476

Amino Acids

53.61

Weight (kDa)

9.15

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 1 - 75 4.9e-15 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 7 - 80 3.3e-08 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 14 - 75 1.8e-09 Glutathione S-transferase, N-terminal domain
GST_N PF02798 251 - 302 1.9e-11 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 252 - 302 3.3e-07 Glutathione S-transferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 306, 987
AccI GTMKAC 2 cut(s) 15, 1373
AccII CGCG 1 cut(s) 43
AciI CCGC 5 cut(s) 559, 688, 1240, 1259, 1369
AcsI RAATTY 2 cut(s) 80, 761
AcuI CTGAAG 2 cut(s) 423, 1104
AfaI GTAC 3 cut(s) 357, 645, 1326
AfiI CCNNNNNNNGG 2 cut(s) 371, 1052
AjnI CCWGG 4 cut(s) 235, 513, 916, 1194
Alw26I GTCTC 1 cut(s) 1300
AlwNI CAGNNNCTG 2 cut(s) 401, 1082
AoxI GGCC 2 cut(s) 574, 1255
ApeKI GCWGC 6 cut(s) 395, 398, 685, 1076, 1079, 1366
ApoI RAATTY 2 cut(s) 80, 761
ArsI GACNNNNNNTTYG 4 cut(s) 428, 460, 1109, 1141
AspS9I GGNCC 3 cut(s) 575, 626, 1256
AsuHPI GGTGA 2 cut(s) 117, 798
AvaII GGWCC 1 cut(s) 626
BanI GGYRCC 2 cut(s) 306, 987
BbvI GCAGC 6 cut(s) 385, 407, 697, 1066, 1088, 1378
BccI CCATC 6 cut(s) 170, 502, 688, 739, 851, 1183
BceAI ACGGC 1 cut(s) 309
BciT130I CCWGG 4 cut(s) 237, 515, 918, 1196
BciVI GTATCC 4 cut(s) 267, 561, 948, 1242
BcoDI GTCTC 1 cut(s) 1300
BfaI CTAG 4 cut(s) 104, 593, 785, 1274
BfmI CTRYAG 2 cut(s) 658, 1339
BfuI GTATCC 4 cut(s) 267, 561, 948, 1242
BglII AGATCT 2 cut(s) 505, 1186
BisI GCNGC 6 cut(s) 396, 399, 686, 1077, 1080, 1367
BlsI GCNGC 6 cut(s) 397, 400, 687, 1078, 1081, 1368
Bme1390I CCNGG 4 cut(s) 237, 515, 918, 1196
Bme18I GGWCC 1 cut(s) 626
BmgT120I GGNCC 3 cut(s) 575, 626, 1256
BmiI GGNNCC 2 cut(s) 308, 989
BmrFI CCNGG 4 cut(s) 237, 515, 918, 1196
BmsI GCATC 1 cut(s) 1022
BoxI GACNNNNGTC 2 cut(s) 561, 1242
BpmI CTGGAG 2 cut(s) 258, 939
BpuEI CTTGAG 2 cut(s) 557, 1238
BsaAI YACGTR 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 1300
BsaJI CCNNGG 2 cut(s) 325, 1006
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 1052
Bse1I ACTGG 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 339
BseBI CCWGG 4 cut(s) 237, 515, 918, 1196
BseDI CCNNGG 2 cut(s) 325, 1006
BseGI GGATG 3 cut(s) 33, 494, 1175
BseLI CCNNNNNNNGG 2 cut(s) 371, 1052
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 5 cut(s) 306, 399, 523, 1080, 1204
BseNI ACTGG 1 cut(s) 257
BseRI GAGGAG 4 cut(s) 101, 415, 782, 1096
BseXI GCAGC 6 cut(s) 385, 407, 697, 1066, 1088, 1378
Bsh1236I CGCG 1 cut(s) 43
Bsh1285I CGRYCG 3 cut(s) 692, 1240, 1373
BshFI GGCC 2 cut(s) 576, 1257
BshNI GGYRCC 2 cut(s) 306, 987
BsiEI CGRYCG 3 cut(s) 692, 1240, 1373
BsiSI CCGG 2 cut(s) 164, 845
BslFI GGGAC 2 cut(s) 168, 849
BslI CCNNNNNNNGG 2 cut(s) 371, 1052
BsmAI GTCTC 1 cut(s) 1300
BsmFI GGGAC 2 cut(s) 168, 849
BsnI GGCC 2 cut(s) 576, 1257
Bso31I GGTCTC 1 cut(s) 1300
Bsp143I GATC 7 cut(s) 54, 247, 265, 505, 928, 946, 1186
Bsp19I CCATGG 1 cut(s) 1006
BspACI CCGC 5 cut(s) 559, 688, 1240, 1259, 1369
BspANI GGCC 2 cut(s) 576, 1257
BspCNI CTCAG 5 cut(s) 305, 400, 522, 1081, 1203
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 308, 989
BspT107I GGYRCC 2 cut(s) 306, 987
BspTNI GGTCTC 1 cut(s) 1300
BsrDI GCAATG 1 cut(s) 339
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 325, 1006
BssMI GATC 7 cut(s) 54, 247, 265, 505, 928, 946, 1186
BssNAI GTATAC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 1006
Bst1107I GTATAC 1 cut(s) 16
Bst2UI CCWGG 4 cut(s) 237, 515, 918, 1196
Bst4CI ACNGT 1 cut(s) 355
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 4 cut(s) 45, 116, 797, 1259
BstDEI CTNAG 5 cut(s) 292, 408, 509, 1089, 1190
BstDSI CCRYGG 2 cut(s) 325, 1006
BstF5I GGATG 3 cut(s) 33, 494, 1175
BstFNI CGCG 1 cut(s) 43
BstKTI GATC 7 cut(s) 57, 250, 268, 508, 931, 949, 1189
BstMAI GTCTC 1 cut(s) 1300
BstMBI GATC 7 cut(s) 54, 247, 265, 505, 928, 946, 1186
BstMCI CGRYCG 3 cut(s) 692, 1240, 1373
BstMWI GCNNNNNNNGC 4 cut(s) 404, 538, 1085, 1219
BstNI CCWGG 4 cut(s) 237, 515, 918, 1196
BstPAI GACNNNNGTC 2 cut(s) 561, 1242
BstSCI CCNGG 4 cut(s) 235, 513, 916, 1194
BstSFI CTRYAG 2 cut(s) 658, 1339
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 6 cut(s) 385, 407, 697, 1066, 1088, 1378
BstX2I RGATCY 2 cut(s) 505, 1186
BstYI RGATCY 2 cut(s) 505, 1186
BstZ17I GTATAC 1 cut(s) 16
BsuI GTATCC 4 cut(s) 267, 561, 948, 1242
BsuRI GGCC 2 cut(s) 576, 1257
BtgI CCRYGG 2 cut(s) 325, 1006
BtsCI GGATG 3 cut(s) 33, 494, 1175
BtsIMutI CAGTG 2 cut(s) 250, 300
Cac8I GCNNGC 4 cut(s) 45, 116, 797, 1259
CaiI CAGNNNCTG 2 cut(s) 401, 1082
Cfr13I GGNCC 3 cut(s) 575, 626, 1256
Csp6I GTAC 3 cut(s) 356, 644, 1325
CviAII CATG 3 cut(s) 203, 884, 1007
CviQI GTAC 3 cut(s) 356, 644, 1325
DdeI CTNAG 5 cut(s) 292, 408, 509, 1089, 1190
DpnI GATC 7 cut(s) 56, 249, 267, 507, 930, 948, 1188
DpnII GATC 7 cut(s) 54, 247, 265, 505, 928, 946, 1186
Eco130I CCWWGG 1 cut(s) 1006
Eco31I GGTCTC 1 cut(s) 1300
Eco47I GGWCC 1 cut(s) 626
Eco57I CTGAAG 2 cut(s) 423, 1104
EcoO109I RGGNCCY 1 cut(s) 626
EcoRI GAATTC 2 cut(s) 80, 761
EcoRII CCWGG 4 cut(s) 235, 513, 916, 1194
EcoT14I CCWWGG 1 cut(s) 1006
ErhI CCWWGG 1 cut(s) 1006
FaeI CATG 3 cut(s) 206, 887, 1010
FaqI GGGAC 2 cut(s) 168, 849
FatI CATG 3 cut(s) 202, 883, 1006
FauI CCCGC 1 cut(s) 1266
FauNDI CATATG 2 cut(s) 340, 1021
FblI GTMKAC 2 cut(s) 15, 1373
Fnu4HI GCNGC 6 cut(s) 396, 399, 686, 1077, 1080, 1367
FokI GGATG 3 cut(s) 40, 481, 1162
Fsp4HI GCNGC 6 cut(s) 396, 399, 686, 1077, 1080, 1367
FspBI CTAG 4 cut(s) 104, 593, 785, 1274
GluI GCNGC 6 cut(s) 396, 399, 686, 1077, 1080, 1367
GsuI CTGGAG 2 cut(s) 258, 939
HaeIII GGCC 2 cut(s) 576, 1257
HapII CCGG 2 cut(s) 164, 845
Hin1II CATG 3 cut(s) 206, 887, 1010
HincII GTYRAC 1 cut(s) 1374
HindII GTYRAC 1 cut(s) 1374
HinfI GANTC 5 cut(s) 385, 443, 880, 1066, 1124
HpaII CCGG 2 cut(s) 164, 845
HphI GGTGA 2 cut(s) 117, 798
Hpy166II GTNNAC 2 cut(s) 16, 1374
Hpy188I TCNGA 2 cut(s) 567, 1248
Hpy188III TCNNGA 6 cut(s) 274, 593, 680, 955, 1274, 1361
Hpy8I GTNNAC 2 cut(s) 16, 1374
Hpy99I CGWCG 2 cut(s) 1306, 1378
HpyAV CCTTC 3 cut(s) 48, 747, 1428
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 4 cut(s) 404, 538, 1085, 1219
HpyF3I CTNAG 5 cut(s) 292, 408, 509, 1089, 1190
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 3 cut(s) 206, 887, 1010
Kzo9I GATC 7 cut(s) 54, 247, 265, 505, 928, 946, 1186
LmnI GCTCC 2 cut(s) 861, 1379
Lsp1109I GCAGC 6 cut(s) 385, 407, 697, 1066, 1088, 1378
LweI GCATC 1 cut(s) 1022
MaeI CTAG 4 cut(s) 104, 593, 785, 1274
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 3 cut(s) 30, 123, 804
MalI GATC 7 cut(s) 56, 249, 267, 507, 930, 948, 1188
MboI GATC 7 cut(s) 54, 247, 265, 505, 928, 946, 1186
MboII GAAGA 3 cut(s) 49, 650, 1331
MfeI CAATTG 1 cut(s) 1061
MflI RGATCY 2 cut(s) 505, 1186
MlyI GAGTC 3 cut(s) 452, 889, 1133
MmeI TCCRAC 4 cut(s) 279, 545, 960, 1226
MseI TTAA 2 cut(s) 186, 867
MspA1I CMGCKG 4 cut(s) 398, 688, 1079, 1369
MspI CCGG 2 cut(s) 164, 845
MspR9I CCNGG 4 cut(s) 237, 515, 918, 1196
MunI CAATTG 1 cut(s) 1061
MvaI CCWGG 4 cut(s) 237, 515, 918, 1196
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 4 cut(s) 404, 538, 1085, 1219
NcoI CCATGG 1 cut(s) 1006
NdeI CATATG 2 cut(s) 340, 1021
NdeII GATC 7 cut(s) 54, 247, 265, 505, 928, 946, 1186
NlaIII CATG 3 cut(s) 206, 887, 1010
NlaIV GGNNCC 2 cut(s) 308, 989
NmuCI GTSAC 3 cut(s) 30, 123, 804
PfeI GAWTC 2 cut(s) 385, 1066
PfoI TCCNGGA 2 cut(s) 235, 916
PkrI GCNGC 6 cut(s) 397, 400, 687, 1078, 1081, 1368
PleI GAGTC 3 cut(s) 451, 888, 1132
PpsI GAGTC 3 cut(s) 451, 888, 1132
Ppu21I YACGTR 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 626
PshAI GACNNNNGTC 2 cut(s) 561, 1242
Psp5II RGGWCCY 1 cut(s) 626
Psp6I CCWGG 4 cut(s) 235, 513, 916, 1194
PspGI CCWGG 4 cut(s) 235, 513, 916, 1194
PspN4I GGNNCC 2 cut(s) 308, 989
PspPI GGNCC 3 cut(s) 575, 626, 1256
PspPPI RGGWCCY 1 cut(s) 626
PstNI CAGNNNCTG 2 cut(s) 401, 1082
PsuI RGATCY 2 cut(s) 505, 1186
PvuII CAGCTG 2 cut(s) 398, 1079
RsaI GTAC 3 cut(s) 357, 645, 1326
RsaNI GTAC 3 cut(s) 356, 644, 1325
SalI GTCGAC 1 cut(s) 1372
SaqAI TTAA 2 cut(s) 186, 867
SatI GCNGC 6 cut(s) 396, 399, 686, 1077, 1080, 1367
Sau3AI GATC 7 cut(s) 54, 247, 265, 505, 928, 946, 1186
Sau96I GGNCC 3 cut(s) 575, 626, 1256
SchI GAGTC 3 cut(s) 452, 889, 1133
ScrFI CCNGG 4 cut(s) 237, 515, 918, 1196
SfaNI GCATC 1 cut(s) 1022
SfcI CTRYAG 2 cut(s) 658, 1339
SinI GGWCC 1 cut(s) 626
SmlI CTYRAG 2 cut(s) 536, 1217
SmoI CTYRAG 2 cut(s) 536, 1217
SsiI CCGC 5 cut(s) 559, 688, 1240, 1259, 1369
SspMI CTAG 4 cut(s) 104, 593, 785, 1274
StyD4I CCNGG 4 cut(s) 235, 513, 916, 1194
StyI CCWWGG 1 cut(s) 1006
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 1 cut(s) 21
TaqI TCGA 5 cut(s) 84, 692, 765, 1373, 1397
TatI WGTACW 2 cut(s) 643, 1324
TfiI GAWTC 2 cut(s) 385, 1066
Tru1I TTAA 2 cut(s) 186, 867
Tru9I TTAA 2 cut(s) 186, 867
TscAI CASTG 2 cut(s) 257, 300
TseFI GTSAC 3 cut(s) 30, 123, 804
TseI GCWGC 6 cut(s) 395, 398, 685, 1076, 1079, 1366
Tsp45I GTSAC 3 cut(s) 30, 123, 804
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 257, 300
VpaK11BI GGWCC 1 cut(s) 626
XapI RAATTY 2 cut(s) 80, 761
XbaI TCTAGA 2 cut(s) 592, 1273
XmiI GTMKAC 2 cut(s) 15, 1373
XspI CTAG 4 cut(s) 104, 593, 785, 1274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.