Rh7DG323000

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000423
Physical Location & Seq
Forward (+)
38687036 .. 38696100
9065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG323000.1

Sequence Viewer

Length: 1032 bp
ATGAAGATGAAGCTTTTCCAGCTCTTTATCACTGCATCGATTCCAGTCTTGAAAACCCTATTGATTACTGCGCTTGGCTCATATCTTGCAACTGAACGCGTCAATATTCTGGGGGAAGACAGTAGGAAGCCCTTAAACAGTGTTGTATTTTTCGTGTTCAATCCAGCCCTGGTTGGTTCCAGCCTTGCCCAGACCATAACATATCACAGTATGATTAAGCTGTGGTTCATGCCTGTGAACGTCCTCATGACCTTTATTGTTGGTTCAATATTTGGATGGATACTCATCCTGTTAACAAGAACTCCTCGACGTCTTCGAGGTCTTACTGTGGGTTGCTGTGCTGCTGGAAATTTAGGGAACATGCTCCTTATTATAATCCCAGCTGTTTGTGAAGAAAAAGGGAGTCCATTTGGAGCTCCTGATGTTTGTTATGCTTACGGATTGGCATATGCTTCACTTTCAATGGCGATCTCGGTTGTTTATTTGTGGTCCTATGTTTATAGTATTGTGAGGATATCTTCAAAGAGAGACACTCTTGATCAAGACACGATCCAATCTTTGGAGATATCCTCCATCCCAAACCAAATCATGACACCTCCGGGCAAAATAATGAACCGTATAATGAAGGTGGTTAAAAAGCTCAATCTAGAAACGATCTTTTCCCCCTCAATAGTTGCAGCGATCGTTGGCTTTGTTATCGGAGTCATCCCTCCAGTTCGAAAAGTATTCATAGAAGATGGCGCTCCTCTACGGGCGGCGGTGGTCCTCTCAGTACCAGCTACTACAACAATGTTGCAATCAACACTGACAGCTCTATCGGAGGACAACGAGAGGCTGATGCGGAGCAACACCATGCTTATGTCCGAGCTCAACCAGATGAGAAAGCTTTACAACGATTTCATCTACTTCTTTCATAACCATGTCAAGCTTGGCGCACCAAGCAATTCTTATCCAGTTTCTCTGCTTTGCAACCCAACGCCAAGCTCACACAATCCCAACTCTTCGGCCGCCATAAACAAGCCTCTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

343

Amino Acids

37.76

Weight (kDa)

9.49

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 12 - 257 8.3e-46 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AatII GACGTC 1 cut(s) 313
AccB7I CCANNNNNTGG 1 cut(s) 559
AccII CGCG 1 cut(s) 99
AciI CCGC 4 cut(s) 755, 758, 841, 1008
AclWI GGATC 1 cut(s) 544
AcoI YGGCCR 1 cut(s) 1005
AcsI RAATTY 1 cut(s) 349
AcyI GRCGYC 1 cut(s) 310
AfaI GTAC 1 cut(s) 774
AfiI CCNNNNNNNGG 1 cut(s) 559
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 5 cut(s) 52, 160, 267, 462, 522
AjnI CCWGG 1 cut(s) 168
Alw21I GWGCWC 2 cut(s) 418, 870
Alw26I GTCTC 1 cut(s) 522
AlwI GGATC 1 cut(s) 544
AoxI GGCC 1 cut(s) 1005
ApeKI GCWGC 2 cut(s) 341, 677
ApoI RAATTY 1 cut(s) 349
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 3 cut(s) 73, 743, 935
AspS9I GGNCC 2 cut(s) 489, 763
AsuC2I CCSGG 1 cut(s) 600
AsuII TTCGAA 1 cut(s) 718
AvaII GGWCC 2 cut(s) 489, 763
BanII GRGCYC 2 cut(s) 418, 870
BbsI GAAGAC 2 cut(s) 123, 305
Bbv12I GWGCWC 2 cut(s) 418, 870
BbvI GCAGC 2 cut(s) 328, 689
BccI CCATC 3 cut(s) 270, 581, 731
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 273
BclI TGATCA 1 cut(s) 538
BcnI CCSGG 1 cut(s) 600
BcoDI GTCTC 1 cut(s) 522
BfaI CTAG 2 cut(s) 647, 1030
BfoI RGCGCY 1 cut(s) 744
BfuI GTATCC 1 cut(s) 273
BisI GCNGC 4 cut(s) 342, 678, 756, 1008
BlsI GCNGC 4 cut(s) 343, 679, 757, 1009
Bme1390I CCNGG 2 cut(s) 170, 600
Bme18I GGWCC 2 cut(s) 489, 763
BmgT120I GGNCC 2 cut(s) 489, 763
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 2 cut(s) 170, 600
BmsI GCATC 2 cut(s) 44, 828
BpiI GAAGAC 2 cut(s) 123, 305
BplI GAGNNNNNCTC 4 cut(s) 517, 549, 554, 586
BpmI CTGGAG 1 cut(s) 696
Bpu14I TTCGAA 1 cut(s) 718
BpuMI CCSGG 1 cut(s) 600
Bsa29I ATCGAT 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse1I ACTGG 3 cut(s) 44, 713, 953
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 4 cut(s) 281, 285, 573, 705
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMII CTCAG 1 cut(s) 783
BseNI ACTGG 3 cut(s) 44, 713, 953
BseRI GAGGAG 2 cut(s) 294, 735
BseX3I CGGCCG 1 cut(s) 1005
BseXI GCAGC 2 cut(s) 328, 689
BseYI CCCAGC 1 cut(s) 379
Bsh1236I CGCG 1 cut(s) 99
Bsh1285I CGRYCG 2 cut(s) 684, 1008
BshFI GGCC 1 cut(s) 1007
BshVI ATCGAT 1 cut(s) 38
BsiEI CGRYCG 2 cut(s) 684, 1008
BsiHKAI GWGCWC 2 cut(s) 418, 870
BsiSI CCGG 1 cut(s) 599
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 1 cut(s) 522
BsnI GGCC 1 cut(s) 1007
Bsp119I TTCGAA 1 cut(s) 718
Bsp1286I GDGCHC 2 cut(s) 418, 870
Bsp143I GATC 5 cut(s) 468, 538, 549, 654, 681
BspACI CCGC 4 cut(s) 755, 758, 841, 1008
BspANI GGCC 1 cut(s) 1007
BspCNI CTCAG 1 cut(s) 782
BspDI ATCGAT 1 cut(s) 38
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 2 cut(s) 246, 588
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 1 cut(s) 544
BspT104I TTCGAA 1 cut(s) 718
BsrI ACTGG 3 cut(s) 44, 713, 953
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 5 cut(s) 468, 538, 549, 654, 681
BssNI GRCGYC 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 5 cut(s) 122, 140, 209, 328, 617
Bst6I CTCTTC 1 cut(s) 1006
BstACI GRCGYC 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 718
BstDEI CTNAG 1 cut(s) 769
BstF5I GGATG 4 cut(s) 281, 285, 573, 705
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 744
BstHHI GCGC 3 cut(s) 73, 743, 935
BstKTI GATC 5 cut(s) 471, 541, 552, 657, 684
BstMAI GTCTC 1 cut(s) 522
BstMBI GATC 5 cut(s) 468, 538, 549, 654, 681
BstMCI CGRYCG 2 cut(s) 684, 1008
BstMWI GCNNNNNNNGC 2 cut(s) 19, 939
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 2 cut(s) 168, 598
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 328, 689
BstV2I GAAGAC 2 cut(s) 123, 305
BstZI CGGCCG 1 cut(s) 1005
Bsu15I ATCGAT 1 cut(s) 38
BsuI GTATCC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 1007
BsuTUI ATCGAT 1 cut(s) 38
BtsCI GGATG 4 cut(s) 281, 285, 573, 705
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 3 cut(s) 30, 145, 803
CciI TCATGA 2 cut(s) 246, 588
CfoI GCGC 3 cut(s) 73, 743, 935
Cfr13I GGNCC 2 cut(s) 489, 763
ClaI ATCGAT 1 cut(s) 38
CseI GACGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 773
CviAII CATG 6 cut(s) 229, 247, 361, 589, 853, 920
CviQI GTAC 1 cut(s) 773
DdeI CTNAG 1 cut(s) 769
DpnI GATC 5 cut(s) 470, 540, 551, 656, 683
DpnII GATC 5 cut(s) 468, 538, 549, 654, 681
EaeI YGGCCR 1 cut(s) 1005
EagI CGGCCG 1 cut(s) 1005
Eam1104I CTCTTC 1 cut(s) 1006
EarI CTCTTC 1 cut(s) 1006
Ecl136II GAGCTC 2 cut(s) 416, 868
EclXI CGGCCG 1 cut(s) 1005
Eco24I GRGCYC 2 cut(s) 418, 870
Eco32I GATATC 2 cut(s) 516, 567
Eco47I GGWCC 2 cut(s) 489, 763
Eco52I CGGCCG 1 cut(s) 1005
Eco53kI GAGCTC 2 cut(s) 416, 868
EcoICRI GAGCTC 2 cut(s) 416, 868
EcoRII CCWGG 1 cut(s) 168
EcoRV GATATC 2 cut(s) 516, 567
EcoT38I GRGCYC 2 cut(s) 418, 870
FaeI CATG 6 cut(s) 232, 250, 364, 592, 856, 923
FalI AAGNNNNNCTT 2 cut(s) 931, 963
FatI CATG 6 cut(s) 228, 246, 360, 588, 852, 919
FauNDI CATATG 1 cut(s) 448
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 4 cut(s) 342, 678, 756, 1008
FokI GGATG 4 cut(s) 272, 288, 560, 692
FriOI GRGCYC 2 cut(s) 418, 870
Fsp4HI GCNGC 4 cut(s) 342, 678, 756, 1008
FspBI CTAG 2 cut(s) 647, 1030
GlaI GCGC 3 cut(s) 72, 742, 934
GluI GCNGC 4 cut(s) 342, 678, 756, 1008
GsaI CCCAGC 1 cut(s) 383
GsuI CTGGAG 1 cut(s) 696
HaeII RGCGCY 1 cut(s) 744
HaeIII GGCC 1 cut(s) 1007
HapII CCGG 1 cut(s) 599
HgaI GACGC 1 cut(s) 88
HhaI GCGC 3 cut(s) 73, 743, 935
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 6 cut(s) 232, 250, 364, 592, 856, 923
Hin6I GCGC 3 cut(s) 71, 741, 933
HinP1I GCGC 3 cut(s) 71, 741, 933
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HindIII AAGCTT 3 cut(s) 11, 884, 926
HinfI GANTC 3 cut(s) 40, 403, 702
HpaI GTTAAC 1 cut(s) 294
HpaII CCGG 1 cut(s) 599
Hpy166II GTNNAC 2 cut(s) 238, 294
Hpy188I TCNGA 4 cut(s) 701, 820, 865, 1026
Hpy188III TCNNGA 7 cut(s) 49, 247, 419, 536, 542, 589, 647
Hpy8I GTNNAC 2 cut(s) 238, 294
Hpy99I CGWCG 1 cut(s) 312
HpyAV CCTTC 1 cut(s) 619
HpyCH4III ACNGT 5 cut(s) 122, 140, 209, 328, 617
HpyCH4IV ACGT 2 cut(s) 240, 310
HpyCH4V TGCA 5 cut(s) 35, 89, 677, 796, 969
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 939
HpyF3I CTNAG 1 cut(s) 769
HpySE526I ACGT 2 cut(s) 240, 310
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 6 cut(s) 232, 250, 364, 592, 856, 923
HspAI GCGC 3 cut(s) 71, 741, 933
Ksp22I TGATCA 1 cut(s) 538
KspAI GTTAAC 1 cut(s) 294
Kzo9I GATC 5 cut(s) 468, 538, 549, 654, 681
LmnI GCTCC 5 cut(s) 369, 413, 421, 748, 843
Lsp1109I GCAGC 2 cut(s) 328, 689
LweI GCATC 2 cut(s) 44, 828
MaeI CTAG 2 cut(s) 647, 1030
MaeII ACGT 2 cut(s) 240, 310
MalI GATC 5 cut(s) 470, 540, 551, 656, 683
MboI GATC 5 cut(s) 468, 538, 549, 654, 681
MboII GAAGA 7 cut(s) 16, 128, 305, 404, 510, 746, 993
MhlI GDGCHC 2 cut(s) 418, 870
MluCI AATT 2 cut(s) 349, 943
MluI ACGCGT 1 cut(s) 97
MlyI GAGTC 2 cut(s) 412, 711
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 4 cut(s) 134, 216, 293, 633
MslI CAYNNNNRTG 3 cut(s) 233, 857, 918
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 1 cut(s) 599
MspR9I CCNGG 2 cut(s) 170, 600
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 19, 939
NciI CCSGG 1 cut(s) 600
NdeI CATATG 1 cut(s) 448
NdeII GATC 5 cut(s) 468, 538, 549, 654, 681
NlaIII CATG 6 cut(s) 232, 250, 364, 592, 856, 923
NlaIV GGNNCC 1 cut(s) 178
NspI RCATGY 1 cut(s) 364
NspV TTCGAA 1 cut(s) 718
PagI TCATGA 2 cut(s) 246, 588
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 559
PkrI GCNGC 4 cut(s) 343, 679, 757, 1009
Ple19I CGATCG 1 cut(s) 684
PleI GAGTC 2 cut(s) 411, 710
PpsI GAGTC 2 cut(s) 411, 710
PsiI TTATAA 1 cut(s) 374
Psp124BI GAGCTC 2 cut(s) 418, 870
Psp6I CCWGG 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 2 cut(s) 489, 763
PvuI CGATCG 1 cut(s) 684
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 1 cut(s) 774
RsaNI GTAC 1 cut(s) 773
RseI CAYNNNNRTG 3 cut(s) 233, 857, 918
SacI GAGCTC 2 cut(s) 418, 870
SaqAI TTAA 4 cut(s) 134, 216, 293, 633
SatI GCNGC 4 cut(s) 342, 678, 756, 1008
Sau3AI GATC 5 cut(s) 468, 538, 549, 654, 681
Sau96I GGNCC 2 cut(s) 489, 763
SchI GAGTC 2 cut(s) 412, 711
ScrFI CCNGG 2 cut(s) 170, 600
SduI GDGCHC 2 cut(s) 418, 870
SfaNI GCATC 2 cut(s) 44, 828
SfuI TTCGAA 1 cut(s) 718
SinI GGWCC 2 cut(s) 489, 763
SmiMI CAYNNNNRTG 3 cut(s) 233, 857, 918
Sse9I AATT 2 cut(s) 349, 943
SsiI CCGC 4 cut(s) 755, 758, 841, 1008
SspI AATATT 2 cut(s) 106, 270
SspMI CTAG 2 cut(s) 647, 1030
SstI GAGCTC 2 cut(s) 418, 870
StyD4I CCNGG 2 cut(s) 168, 598
TaaI ACNGT 5 cut(s) 122, 140, 209, 328, 617
TaiI ACGT 2 cut(s) 243, 313
TaqI TCGA 4 cut(s) 38, 307, 316, 718
TasI AATT 2 cut(s) 349, 943
TauI GCSGC 2 cut(s) 758, 1010
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 4 cut(s) 134, 216, 293, 633
Tru9I TTAA 4 cut(s) 134, 216, 293, 633
TscAI CASTG 3 cut(s) 37, 145, 810
TseI GCWGC 2 cut(s) 341, 677
TspDTI ATGAA 8 cut(s) 17, 23, 217, 626, 638, 718, 889, 902
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 3 cut(s) 37, 145, 810
Van91I CCANNNNNTGG 1 cut(s) 559
VpaK11BI GGWCC 2 cut(s) 489, 763
XapI RAATTY 1 cut(s) 349
XbaI TCTAGA 1 cut(s) 646
XceI RCATGY 1 cut(s) 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 926
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 2 cut(s) 647, 1030
ZraI GACGTC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.