Prupe.5G004100_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000423
Physical Location & Seq
Forward (+)
531724 .. 535386
3663 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G004100.3

Sequence Viewer

Length: 1242 bp
ATGGAGGTTTTGCAGCTCTTCATCACCGCCTCAATTCCGGTGTTGAAAGTGCTCTTGATCACTGCGCTTGGCTCATATCTTGCGCTTGATAGCGTCAACATTCTCGGGGAAGACTCTCGGAAGCACTTAAACACTGTTGTATTTTACGTATTGAATCCTGCCCTGGTGAGCAGCAACCTTGCGCGGACAATAACATATGAAAGCATGGTTAAGCTGTGGTTCATGCCGGTGAATATCCTCATCACATTTATTGTTGGTTCGATACTAGGATGGATACTCCTCCTGCTAACAAGACCTCCTGCACATCTGCGAGGCCTCGTCTTGGGTTGCTGTGCTGCAGGAAATTTGGGGAACTTGCTCCTCATTATAGTCCCAGCTGTTTGTAAAGAAAAAGGGAGCCCATTTGGAGCTCCTGATGTCTGTCGTACTTATGGATTGGCTTATGCTTCACTTTCAATGGCGATAGGAGCCATTTATTTGTGGTCCTATGTGTATAATATTGTGCGGATATCTGCAAAGAGAGGCACCCAAGATTCAACCCAGTCTCCGGTGAGATCCTCCACACCGAACGAAATAAGTTGCACTGAGCCTCTGCTTTCTTCAAAGGAATCTGAGGTAGTGGAGGACAATGCCAATCATTATGCACTGCCCTGCACTATATCTGAGGAAAACGCTAAGATGACAACTTCAGGGAAAATAAAGCAACGTATAATGATGGTGTTTGGAAAGCTCAATCTGAAAACAATATTTGCCCCTTCTACGACTGGAGCAATTGTTGGTTTTTCAATTGGACTCATCCCTCAGATTCGAAAAGCACTGATAGGAGATGGTGCTCCTCTACGGGTGGTTCAAGACACTGCTTCTTTGTTGGGAGATGGAGCTATCCCAACTCTCACTTTGATAATAGGAGGAAACCTACTTAAAGGTTTGAGAGGGCCAGGGATGCAGAAATCTCTGGTTGTTGGCATCATCATTGTTCGTTATGTTGCCCTGCCTCTTATAGGAATATTGGTAATTAAAGGTGCACTCAAACTTGGGTTGGTGCACTCTGATCCATTGTATCTGTTTGTTCTTTTGCTTCAGTTTTCACTCCCACCAGCGATGAACATAGGAACAATGACTCAATTGTTCGGAGCAGGAGAAAAGGAATGTTCAGTTATCATGCTGTGGACTTATGCTTTCGCTTCAGTATCACTTACTTTTTGGTCCGCCTTTTTCATGTGGCTTGTGGCCCGAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

414

Amino Acids

44.55

Weight (kDa)

9.25

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 524
AccII CGCG 1 cut(s) 184
AciI CCGC 4 cut(s) 27, 184, 505, 1209
AclWI GGATC 2 cut(s) 549, 1046
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 3 cut(s) 672, 1064, 1170
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 3 cut(s) 322, 547, 1001
AgsI TTSAA 7 cut(s) 46, 154, 456, 537, 603, 786, 851
AjnI CCWGG 2 cut(s) 162, 937
AluBI AGCT 6 cut(s) 16, 214, 377, 410, 730, 881
AluI AGCT 6 cut(s) 16, 214, 377, 410, 730, 881
Alw21I GWGCWC 5 cut(s) 54, 412, 835, 1027, 1047
Alw26I GTCTC 1 cut(s) 549
Alw44I GTGCAC 2 cut(s) 1023, 1043
AlwI GGATC 2 cut(s) 549, 1046
Ama87I CYCGRG 2 cut(s) 104, 1233
AoxI GGCC 3 cut(s) 313, 935, 1230
ApaLI GTGCAC 2 cut(s) 1023, 1043
ApeKI GCWGC 3 cut(s) 13, 171, 335
ApoI RAATTY 1 cut(s) 343
AspLEI GCGC 3 cut(s) 67, 85, 184
AspS9I GGNCC 4 cut(s) 483, 935, 1206, 1231
AsuHPI GGTGA 4 cut(s) 16, 178, 241, 562
AsuII TTCGAA 1 cut(s) 808
AvaI CYCGRG 2 cut(s) 104, 1233
AvaII GGWCC 2 cut(s) 483, 1206
BaeGI GKGCMC 2 cut(s) 1027, 1047
BanI GGYRCC 1 cut(s) 524
BanII GRGCYC 2 cut(s) 401, 412
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 5 cut(s) 54, 412, 835, 1027, 1047
BbvI GCAGC 3 cut(s) 25, 183, 322
BccI CCATC 4 cut(s) 264, 709, 821, 869
BciT130I CCWGG 2 cut(s) 164, 939
BciVI GTATCC 1 cut(s) 267
BclI TGATCA 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 549
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 336
BfuI GTATCC 1 cut(s) 267
BisI GCNGC 3 cut(s) 14, 172, 336
BlsI GCNGC 3 cut(s) 15, 173, 337
Bme1390I CCNGG 2 cut(s) 164, 939
Bme18I GGWCC 2 cut(s) 483, 1206
BmeT110I CYCGRG 2 cut(s) 104, 1233
BmgT120I GGNCC 4 cut(s) 483, 935, 1206, 1231
BmiI GGNNCC 3 cut(s) 398, 469, 526
BmrFI CCNGG 2 cut(s) 164, 939
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 2 cut(s) 933, 975
BmuI ACTGGG 1 cut(s) 535
BpiI GAAGAC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 786
Bpu14I TTCGAA 1 cut(s) 808
BsaAI YACGTR 1 cut(s) 148
BsaJI CCNNGG 2 cut(s) 162, 938
BsaWI WCCGGW 2 cut(s) 37, 547
BsaXI ACNNNNNCTCC 6 cut(s) 280, 310, 529, 559, 759, 789
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 547, 1001
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 2 cut(s) 541, 769
BseBI CCWGG 2 cut(s) 164, 939
BseDI CCNNGG 2 cut(s) 162, 938
BseGI GGATG 3 cut(s) 275, 795, 948
BseLI CCNNNNNNNGG 3 cut(s) 322, 547, 1001
BseMII CTCAG 4 cut(s) 576, 603, 654, 815
BseNI ACTGG 2 cut(s) 541, 769
BseRI GAGGAG 3 cut(s) 269, 350, 825
BseSI GKGCMC 2 cut(s) 1027, 1047
BseXI GCAGC 3 cut(s) 25, 183, 322
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 2 cut(s) 285, 637
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 3 cut(s) 315, 937, 1232
BshNI GGYRCC 1 cut(s) 524
BsiHKAI GWGCWC 5 cut(s) 54, 412, 835, 1027, 1047
BsiHKCI CYCGRG 2 cut(s) 104, 1233
BsiSI CCGG 3 cut(s) 38, 227, 548
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 3 cut(s) 322, 547, 1001
BsmAI GTCTC 1 cut(s) 549
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 3 cut(s) 315, 937, 1232
BsoBI CYCGRG 2 cut(s) 104, 1233
Bsp119I TTCGAA 1 cut(s) 808
Bsp1286I GDGCHC 6 cut(s) 54, 401, 412, 835, 1027, 1047
Bsp143I GATC 3 cut(s) 57, 554, 1051
BspACI CCGC 4 cut(s) 27, 184, 505, 1209
BspANI GGCC 3 cut(s) 315, 937, 1232
BspCNI CTCAG 4 cut(s) 577, 604, 655, 814
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 398, 469, 526
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 2 cut(s) 549, 1046
BspQI GCTCTTC 1 cut(s) 23
BspT104I TTCGAA 1 cut(s) 808
BspT107I GGYRCC 1 cut(s) 524
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 2 cut(s) 541, 769
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 162, 938
BssMI GATC 3 cut(s) 57, 554, 1051
Bst2UI CCWGG 2 cut(s) 164, 939
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 148
BstBI TTCGAA 1 cut(s) 808
BstDEI CTNAG 5 cut(s) 585, 612, 663, 675, 801
BstENI CCTNNNNNAGG 1 cut(s) 999
BstF5I GGATG 3 cut(s) 275, 795, 948
BstFNI CGCG 1 cut(s) 184
BstHHI GCGC 3 cut(s) 67, 85, 184
BstKTI GATC 3 cut(s) 60, 557, 1054
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 3 cut(s) 57, 554, 1051
BstMWI GCNNNNNNNGC 2 cut(s) 467, 943
BstNI CCWGG 2 cut(s) 164, 939
BstSCI CCNGG 2 cut(s) 162, 937
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 2 cut(s) 1027, 1047
BstSNI TACGTA 1 cut(s) 148
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 3 cut(s) 25, 183, 322
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
BsuI GTATCC 1 cut(s) 267
BsuRI GGCC 3 cut(s) 315, 937, 1232
BtgZI GCGATG 1 cut(s) 1115
BtsCI GGATG 3 cut(s) 275, 795, 948
BtsI GCAGTG 3 cut(s) 60, 644, 855
BtsIMutI CAGTG 6 cut(s) 60, 132, 582, 644, 815, 855
CfoI GCGC 3 cut(s) 67, 85, 184
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 4 cut(s) 483, 935, 1206, 1231
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 426
CviAII CATG 4 cut(s) 205, 223, 1162, 1219
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 5 cut(s) 585, 612, 663, 675, 801
DpnI GATC 3 cut(s) 59, 556, 1053
DpnII GATC 3 cut(s) 57, 554, 1051
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
EciI GGCGGA 1 cut(s) 1198
Ecl136II GAGCTC 1 cut(s) 410
Eco105I TACGTA 1 cut(s) 148
Eco147I AGGCCT 1 cut(s) 315
Eco24I GRGCYC 2 cut(s) 401, 412
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 2 cut(s) 483, 1206
Eco53kI GAGCTC 1 cut(s) 410
Eco57I CTGAAG 3 cut(s) 672, 1064, 1170
Eco88I CYCGRG 2 cut(s) 104, 1233
EcoICRI GAGCTC 1 cut(s) 410
EcoNI CCTNNNNNAGG 1 cut(s) 999
EcoRII CCWGG 2 cut(s) 162, 937
EcoRV GATATC 1 cut(s) 510
EcoT38I GRGCYC 2 cut(s) 401, 412
FaeI CATG 4 cut(s) 208, 226, 1165, 1222
FaqI GGGAC 1 cut(s) 356
FatI CATG 4 cut(s) 204, 222, 1161, 1218
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 14, 172, 336
FokI GGATG 3 cut(s) 282, 782, 955
FriOI GRGCYC 2 cut(s) 401, 412
Fsp4HI GCNGC 3 cut(s) 14, 172, 336
FspBI CTAG 1 cut(s) 266
GlaI GCGC 3 cut(s) 66, 84, 183
GluI GCNGC 3 cut(s) 14, 172, 336
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 1 cut(s) 786
HaeIII GGCC 3 cut(s) 315, 937, 1232
HapII CCGG 3 cut(s) 38, 227, 548
HgaI GACGC 1 cut(s) 82
HhaI GCGC 3 cut(s) 67, 85, 184
Hin1II CATG 4 cut(s) 208, 226, 1165, 1222
Hin6I GCGC 3 cut(s) 65, 83, 182
HinP1I GCGC 3 cut(s) 65, 83, 182
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 7 cut(s) 113, 154, 533, 608, 792, 805, 1120
HpaII CCGG 3 cut(s) 38, 227, 548
HphI GGTGA 4 cut(s) 16, 178, 241, 562
Hpy166II GTNNAC 4 cut(s) 97, 1025, 1045, 1170
Hpy188I TCNGA 7 cut(s) 120, 613, 664, 738, 804, 1051, 1133
Hpy188III TCNNGA 3 cut(s) 55, 413, 851
Hpy8I GTNNAC 4 cut(s) 97, 1025, 1045, 1170
HpyAV CCTTC 1 cut(s) 765
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 2 cut(s) 147, 706
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 943
HpyF3I CTNAG 5 cut(s) 585, 612, 663, 675, 801
HpySE526I ACGT 2 cut(s) 147, 706
Hsp92II CATG 4 cut(s) 208, 226, 1165, 1222
HspAI GCGC 3 cut(s) 65, 83, 182
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 3 cut(s) 57, 554, 1051
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 9 cut(s) 363, 396, 407, 415, 467, 767, 838, 878, 1133
Lsp1109I GCAGC 3 cut(s) 25, 183, 322
LweI GCATC 2 cut(s) 933, 975
MaeI CTAG 1 cut(s) 266
MaeII ACGT 2 cut(s) 147, 706
MalI GATC 3 cut(s) 59, 556, 1053
MboI GATC 3 cut(s) 57, 554, 1051
MboII GAAGA 3 cut(s) 10, 122, 591
MfeI CAATTG 3 cut(s) 771, 786, 1124
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 6 cut(s) 54, 401, 412, 835, 1027, 1047
MluCI AATT 6 cut(s) 33, 343, 771, 786, 1014, 1124
MlyI GAGTC 3 cut(s) 107, 786, 1114
MseI TTAA 4 cut(s) 128, 210, 921, 1017
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 3 cut(s) 38, 227, 548
MspR9I CCNGG 2 cut(s) 164, 939
MunI CAATTG 3 cut(s) 771, 786, 1124
MvaI CCWGG 2 cut(s) 164, 939
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 2 cut(s) 467, 943
NdeI CATATG 1 cut(s) 196
NdeII GATC 3 cut(s) 57, 554, 1051
NlaIII CATG 4 cut(s) 208, 226, 1165, 1222
NlaIV GGNNCC 3 cut(s) 398, 469, 526
NspV TTCGAA 1 cut(s) 808
PceI AGGCCT 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 23
PfeI GAWTC 4 cut(s) 154, 533, 608, 805
PkrI GCNGC 3 cut(s) 15, 173, 337
PleI GAGTC 3 cut(s) 107, 786, 1114
PpsI GAGTC 3 cut(s) 107, 786, 1114
Ppu21I YACGTR 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 412
Psp6I CCWGG 2 cut(s) 162, 937
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 2 cut(s) 162, 937
PspN4I GGNNCC 3 cut(s) 398, 469, 526
PspPI GGNCC 4 cut(s) 483, 935, 1206, 1231
PstI CTGCAG 1 cut(s) 340
PsuI RGATCY 1 cut(s) 554
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
RseI CAYNNNNRTG 1 cut(s) 227
SacI GAGCTC 1 cut(s) 412
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 4 cut(s) 128, 210, 921, 1017
SatI GCNGC 3 cut(s) 14, 172, 336
Sau3AI GATC 3 cut(s) 57, 554, 1051
Sau96I GGNCC 4 cut(s) 483, 935, 1206, 1231
SchI GAGTC 3 cut(s) 107, 786, 1114
ScrFI CCNGG 2 cut(s) 164, 939
SduI GDGCHC 6 cut(s) 54, 401, 412, 835, 1027, 1047
SfaNI GCATC 2 cut(s) 933, 975
SfcI CTRYAG 1 cut(s) 336
SfuI TTCGAA 1 cut(s) 808
SinI GGWCC 2 cut(s) 483, 1206
SmiMI CAYNNNNRTG 1 cut(s) 227
SnaBI TACGTA 1 cut(s) 148
Sse9I AATT 6 cut(s) 33, 343, 771, 786, 1014, 1124
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 4 cut(s) 27, 184, 505, 1209
SspI AATATT 3 cut(s) 499, 747, 1008
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 1 cut(s) 412
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 162, 937
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 2 cut(s) 150, 709
TaqI TCGA 2 cut(s) 260, 808
TasI AATT 6 cut(s) 33, 343, 771, 786, 1014, 1124
TfiI GAWTC 4 cut(s) 154, 533, 608, 805
Tru1I TTAA 4 cut(s) 128, 210, 921, 1017
Tru9I TTAA 4 cut(s) 128, 210, 921, 1017
TscAI CASTG 6 cut(s) 67, 139, 589, 651, 822, 862
TseI GCWGC 3 cut(s) 13, 171, 335
TspDTI ATGAA 5 cut(s) 10, 211, 213, 1118, 1207
TspRI CASTG 6 cut(s) 67, 139, 589, 651, 822, 862
VneI GTGCAC 2 cut(s) 1023, 1043
VpaK11BI GGWCC 2 cut(s) 483, 1206
XagI CCTNNNNNAGG 1 cut(s) 999
XapI RAATTY 1 cut(s) 343
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.