RchiOBHm_Chr7g0217081

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000423
Physical Location & Seq
Forward (+)
34994589 .. 35001487
6899 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19426

Sequence Viewer

Length: 1218 bp
ATGGGGCTTTGGACGCTCTTCGTCACCGCATCAGTTCCGGTCTTGGAATCGTTCTTGATTACTGCGCTTGGCTCATATCTTGCACTTGATCGCGTGAACCTTTTGGGCCCAGATTGCAGGAAGTACTTGAACACTATTGTATTCTTTGTGAACACTCCAGCCCTGATTGCTGCCAACCTTGCAGAGACAATAACATATGACAGCCTGGTTAAACTGTGGTTCATGCCGGTGAATATTCTTCTTACATTCATTGTTGGTTCAATATTTGGATGGATACTCATGAAATTAACAAGAACTCCTCCACATTTGCGAGGTCTCGTCTTGGGTTGTTGCGCTGCAGGAAATTTGGGAAACCTTCTCCTCATTATTATTCCAGCAGTTTGTGAAGAATCAGGGAGTCCATTTGGAGATGCTGATACCTGTGATACTACTGGGACTACTTATGCTTCACTTTCAATGGCGATTGGAGCCATTTATTTGTGGACCTATGTGTATAATATTGTGCGGATATCTTCAAAGATGAGCATCCAAGATTCCCCGCAGACCACCGACAGCTCGTCAACATCCAGCCACATAAGTTACACTGAGCGTCTACTTTCTATAGAGGACGATGTGGATCAATGTGAACCTCCCCGTAATGTACCTGAAGGAGATGCTAAGATGACATGTCTAGGTAAAACGAAGGAATGGATGGTGATGGTGAATGAAAAGCTCAATTTGAAAACAGTATTTTCCCCCTCAACTATTGCAGTGATTATTGGGTTTGCAGTTGGAATCATCTCTCCAATTCGAAACTTATTGATTGGAGACGACGCTCCTCTAGCGGTGATCGACGACACTACCTCGTTGTTAGGAGATGCTGCTATCCCGCTTCTTACTTTGATAATAGGAGGCAACCTTGTTAAAGGTTTGAGAGTGGGAGGGATACAAAAATCTATCCTTATTGGCATCATAATTGTTAAATATGTTGCGGCGCCTCTTACAGGAATATTGATTGTTAAAGGGGCAGTAAAATTTGGCTTTGTAAGCAATGATCCATTGTATCTGTTTGTTCTTCTGCTTCAGTTTGCTGTCCCTCCTGCAATGAACTTGGGAACCATCACTCAACTGTTCGGACAAGGAGAGAGTGAGTGTTCAGTTATCATGCTCTGGACTTACATTTTTGCTTCGCTATCGCTTACGTTTTGGTGTGCCTTCTTCTTGTGGCTTGTGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

405

Amino Acids

43.81

Weight (kDa)

4.92

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 396 1.7e-77 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 973
AccI GTMKAC 1 cut(s) 592
AccII CGCG 1 cut(s) 93
AciI CCGC 6 cut(s) 27, 505, 539, 824, 869, 971
AclWI GGATC 2 cut(s) 624, 1028
AcsI RAATTY 2 cut(s) 343, 1013
AcuI CTGAAG 2 cut(s) 666, 1046
AcyI GRCGYC 1 cut(s) 974
AfaI GTAC 2 cut(s) 125, 642
AfiI CCNNNNNNNGG 1 cut(s) 983
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 5 cut(s) 130, 261, 456, 516, 721
AhdI GACNNNNNGTC 1 cut(s) 556
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 2 cut(s) 555, 712
AluI AGCT 2 cut(s) 555, 712
Alw26I GTCTC 3 cut(s) 179, 320, 801
AlwI GGATC 2 cut(s) 624, 1028
AoxI GGCC 2 cut(s) 106, 1212
ApaI GGGCCC 1 cut(s) 110
ApeKI GCWGC 3 cut(s) 170, 335, 860
ApoI RAATTY 2 cut(s) 343, 1013
AspLEI GCGC 3 cut(s) 67, 335, 976
AspS9I GGNCC 3 cut(s) 106, 107, 483
AsuHPI GGTGA 5 cut(s) 16, 241, 706, 712, 838
AsuII TTCGAA 1 cut(s) 790
AvaII GGWCC 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 110
BanI GGYRCC 1 cut(s) 973
BanII GRGCYC 1 cut(s) 110
BbvI GCAGC 3 cut(s) 157, 322, 847
BccI CCATC 4 cut(s) 264, 685, 691, 1106
BciT130I CCWGG 1 cut(s) 206
BciVI GTATCC 2 cut(s) 267, 918
BcoDI GTCTC 3 cut(s) 179, 320, 801
BfaI CTAG 2 cut(s) 671, 821
BfmI CTRYAG 2 cut(s) 336, 600
BfoI RGCGCY 1 cut(s) 977
BfuI GTATCC 2 cut(s) 267, 918
BisI GCNGC 4 cut(s) 171, 336, 861, 972
BlsI GCNGC 4 cut(s) 172, 337, 862, 973
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 483
BmeRI GACNNNNNGTC 1 cut(s) 556
BmgT120I GGNCC 3 cut(s) 106, 107, 483
BmiI GGNNCC 4 cut(s) 108, 469, 975, 1096
BmrFI CCNGG 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 6 cut(s) 38, 400, 534, 643, 847, 957
BmuI ACTGGG 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 141
Bpu14I TTCGAA 1 cut(s) 790
BsaBI GATNNNNATC 2 cut(s) 524, 615
BsaHI GRCGYC 1 cut(s) 974
BsaI GGTCTC 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 983
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 2 cut(s) 1036, 1089
Bse8I GATNNNNATC 2 cut(s) 524, 615
BseBI CCWGG 1 cut(s) 206
BseGI GGATG 4 cut(s) 275, 525, 563, 696
BseJI GATNNNNATC 2 cut(s) 524, 615
BseLI CCNNNNNNNGG 1 cut(s) 983
BseMI GCAATG 2 cut(s) 1036, 1089
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 3 cut(s) 288, 350, 807
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 3 cut(s) 157, 322, 847
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 108, 1214
BshNI GGYRCC 1 cut(s) 973
BsiSI CCGG 2 cut(s) 38, 227
BslFI GGGAC 2 cut(s) 448, 1058
BslI CCNNNNNNNGG 1 cut(s) 983
BsmAI GTCTC 3 cut(s) 179, 320, 801
BsmBI CGTCTC 1 cut(s) 801
BsmFI GGGAC 2 cut(s) 448, 1058
BsnI GGCC 2 cut(s) 108, 1214
Bso31I GGTCTC 1 cut(s) 320
Bsp119I TTCGAA 1 cut(s) 790
Bsp120I GGGCCC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 4 cut(s) 88, 616, 828, 1033
BspACI CCGC 6 cut(s) 27, 505, 539, 824, 869, 971
BspANI GGCC 2 cut(s) 108, 1214
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 4 cut(s) 108, 469, 975, 1096
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 2 cut(s) 624, 1028
BspQI GCTCTTC 1 cut(s) 23
BspT104I TTCGAA 1 cut(s) 790
BspT107I GGYRCC 1 cut(s) 973
BspTNI GGTCTC 1 cut(s) 320
BsrDI GCAATG 2 cut(s) 1036, 1089
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 226
BssMI GATC 4 cut(s) 88, 616, 828, 1033
BssNI GRCGYC 1 cut(s) 974
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 3 cut(s) 216, 727, 1110
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 974
BstBI TTCGAA 1 cut(s) 790
BstDEI CTNAG 2 cut(s) 585, 657
BstENI CCTNNNNNAGG 1 cut(s) 981
BstF5I GGATG 4 cut(s) 275, 525, 563, 696
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 977
BstHHI GCGC 3 cut(s) 67, 335, 976
BstKTI GATC 4 cut(s) 91, 619, 831, 1036
BstMAI GTCTC 3 cut(s) 179, 320, 801
BstMBI GATC 4 cut(s) 88, 616, 828, 1033
BstMWI GCNNNNNNNGC 7 cut(s) 13, 114, 167, 179, 467, 821, 1026
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 2 cut(s) 336, 600
BstSLI GKGCMC 1 cut(s) 110
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 3 cut(s) 157, 322, 847
BsuI GTATCC 2 cut(s) 267, 918
BsuRI GGCC 2 cut(s) 108, 1214
BtsCI GGATG 4 cut(s) 275, 525, 563, 696
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 2 cut(s) 582, 756
CciI TCATGA 1 cut(s) 279
CfoI GCGC 3 cut(s) 67, 335, 976
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 106, 107, 483
CseI GACGC 3 cut(s) 22, 578, 821
Csp6I GTAC 2 cut(s) 124, 641
CviAII CATG 4 cut(s) 223, 280, 666, 1144
CviQI GTAC 2 cut(s) 124, 641
DdeI CTNAG 2 cut(s) 585, 657
DinI GGCGCC 1 cut(s) 975
DpnI GATC 4 cut(s) 90, 618, 830, 1035
DpnII GATC 4 cut(s) 88, 616, 828, 1033
DriI GACNNNNNGTC 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 23
Eam1105I GACNNNNNGTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 483
Eco57I CTGAAG 2 cut(s) 666, 1046
EcoNI CCTNNNNNAGG 1 cut(s) 981
EcoRII CCWGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 510
EcoT38I GRGCYC 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 975
EheI GGCGCC 1 cut(s) 975
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 4 cut(s) 226, 283, 669, 1147
FaqI GGGAC 2 cut(s) 448, 1058
FatI CATG 4 cut(s) 222, 279, 665, 1143
FauI CCCGC 2 cut(s) 546, 876
FauNDI CATATG 1 cut(s) 196
FblI GTMKAC 1 cut(s) 592
Fnu4HI GCNGC 4 cut(s) 171, 336, 861, 972
FokI GGATG 4 cut(s) 282, 512, 550, 703
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 4 cut(s) 171, 336, 861, 972
FspBI CTAG 2 cut(s) 671, 821
GlaI GCGC 3 cut(s) 66, 334, 975
GluI GCNGC 4 cut(s) 171, 336, 861, 972
GsuI CTGGAG 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 977
HaeIII GGCC 2 cut(s) 108, 1214
HapII CCGG 2 cut(s) 38, 227
HgaI GACGC 3 cut(s) 22, 578, 821
HhaI GCGC 3 cut(s) 67, 335, 976
Hin1I GRCGYC 1 cut(s) 974
Hin1II CATG 4 cut(s) 226, 283, 669, 1147
Hin6I GCGC 3 cut(s) 65, 333, 974
HinP1I GCGC 3 cut(s) 65, 333, 974
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 5 cut(s) 47, 389, 397, 533, 774
HpaII CCGG 2 cut(s) 38, 227
HphI GGTGA 5 cut(s) 16, 241, 706, 712, 838
Hpy166II GTNNAC 6 cut(s) 97, 151, 483, 561, 593, 626
Hpy188I TCNGA 1 cut(s) 1115
Hpy188III TCNNGA 3 cut(s) 55, 280, 1150
Hpy8I GTNNAC 6 cut(s) 97, 151, 483, 561, 593, 626
Hpy99I CGWCG 2 cut(s) 815, 836
HpyAV CCTTC 4 cut(s) 365, 641, 676, 1204
HpyCH4III ACNGT 3 cut(s) 216, 727, 1110
HpyCH4IV ACGT 1 cut(s) 1181
HpyCH4V TGCA 7 cut(s) 83, 117, 182, 338, 749, 767, 1082
HpyF10VI GCNNNNNNNGC 7 cut(s) 13, 114, 167, 179, 467, 821, 1026
HpyF3I CTNAG 2 cut(s) 585, 657
HpySE526I ACGT 1 cut(s) 1181
Hsp92I GRCGYC 1 cut(s) 974
Hsp92II CATG 4 cut(s) 226, 283, 669, 1147
HspAI GCGC 3 cut(s) 65, 333, 974
KasI GGCGCC 1 cut(s) 973
Kzo9I GATC 4 cut(s) 88, 616, 828, 1033
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 2 cut(s) 467, 820
Lsp1109I GCAGC 3 cut(s) 157, 322, 847
LweI GCATC 6 cut(s) 38, 400, 534, 643, 847, 957
MaeI CTAG 2 cut(s) 671, 821
MaeII ACGT 1 cut(s) 1181
MaeIII GTNAC 2 cut(s) 22, 578
MalI GATC 4 cut(s) 90, 618, 830, 1035
MboI GATC 4 cut(s) 88, 616, 828, 1033
MboII GAAGA 6 cut(s) 10, 230, 398, 504, 1046, 1189
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 6 cut(s) 284, 343, 715, 786, 954, 1013
Mly113I GGCGCC 1 cut(s) 974
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 751
MseI TTAA 5 cut(s) 210, 287, 903, 960, 999
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 2 cut(s) 38, 227
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 7 cut(s) 13, 114, 167, 179, 467, 821, 1026
NarI GGCGCC 1 cut(s) 974
NdeI CATATG 1 cut(s) 196
NdeII GATC 4 cut(s) 88, 616, 828, 1033
NlaIII CATG 4 cut(s) 226, 283, 669, 1147
NlaIV GGNNCC 4 cut(s) 108, 469, 975, 1096
NmuCI GTSAC 1 cut(s) 22
NspI RCATGY 1 cut(s) 669
NspV TTCGAA 1 cut(s) 790
PagI TCATGA 1 cut(s) 279
PciI ACATGT 1 cut(s) 665
PciSI GCTCTTC 1 cut(s) 23
PfeI GAWTC 4 cut(s) 47, 389, 533, 774
PkrI GCNGC 4 cut(s) 172, 337, 862, 973
PleI GAGTC 1 cut(s) 405
PluTI GGCGCC 1 cut(s) 977
PpsI GAGTC 1 cut(s) 405
PscI ACATGT 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 4 cut(s) 108, 469, 975, 1096
PspOMI GGGCCC 1 cut(s) 106
PspPI GGNCC 3 cut(s) 106, 107, 483
PstI CTGCAG 1 cut(s) 340
RsaI GTAC 2 cut(s) 125, 642
RsaNI GTAC 2 cut(s) 124, 641
RseI CAYNNNNRTG 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 5 cut(s) 210, 287, 903, 960, 999
SatI GCNGC 4 cut(s) 171, 336, 861, 972
Sau3AI GATC 4 cut(s) 88, 616, 828, 1033
Sau96I GGNCC 3 cut(s) 106, 107, 483
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 110
SfaNI GCATC 6 cut(s) 38, 400, 534, 643, 847, 957
SfcI CTRYAG 2 cut(s) 336, 600
SfoI GGCGCC 1 cut(s) 975
SfuI TTCGAA 1 cut(s) 790
SinI GGWCC 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 6 cut(s) 284, 343, 715, 786, 954, 1013
SsiI CCGC 6 cut(s) 27, 505, 539, 824, 869, 971
SspDI GGCGCC 1 cut(s) 973
SspI AATATT 4 cut(s) 235, 264, 499, 990
SspMI CTAG 2 cut(s) 671, 821
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 216, 727, 1110
TaiI ACGT 1 cut(s) 1184
TaqI TCGA 2 cut(s) 790, 831
TasI AATT 6 cut(s) 284, 343, 715, 786, 954, 1013
TatI WGTACW 1 cut(s) 123
TauI GCSGC 1 cut(s) 974
TfiI GAWTC 4 cut(s) 47, 389, 533, 774
Tru1I TTAA 5 cut(s) 210, 287, 903, 960, 999
Tru9I TTAA 5 cut(s) 210, 287, 903, 960, 999
TscAI CASTG 2 cut(s) 589, 756
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 3 cut(s) 170, 335, 860
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 5 cut(s) 211, 238, 296, 720, 1100
TspRI CASTG 2 cut(s) 589, 756
VpaK11BI GGWCC 1 cut(s) 483
XagI CCTNNNNNAGG 1 cut(s) 981
XapI RAATTY 2 cut(s) 343, 1013
XceI RCATGY 1 cut(s) 669
XmiI GTMKAC 1 cut(s) 592
XspI CTAG 2 cut(s) 671, 821
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.