Rmu_sc0007359.1_g000005

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007359.1
OG0000423
Physical Location & Seq
Reverse (-)
21957 .. 23173
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007359.1_g000005.1.cds

Sequence Viewer

Length: 825 bp
atggcgcttctgcagctcttcatcaccgcctcgattccggtcatgaaagtcctcttgatcactgcacttggctcctatcttgcacttgagcgcgttaatattctgggggaagaaaccaggaagaacttgaacaccgttgtattttatgtattcagtccagctctggtgggaactaacgttgcccagaccattacatatgacggtatgattaaactgtggtttatgcctgtgaacatcctaatcaccttcattgttggttcggtacttggatggatactcatccaattagcaagaccacctccacacctccgaggcctcattttgggatgctgtgcggctggaaatttggggaacttgctcctcatcataatcccagcagtctgtaaagaaaagggaagcccatttggagctcctgatgtctgtcacacttatggaatggcttatgcatcactttcaatggcaacaggagccatttatatttggtcctatgtgtataacattgtgaggatatcttcaaagtggagtacccaagactccccccagtctttgaaggaaccctccgaatcaaaccaagtaagttgcactgagcctcggctttcttccaaggaatatgggatagtagcggacaatcccgatcagtgtgcactgccctgtactatatctcaacaagactcaaagcttctaaacttgattattaatttgcatgatttaatgctctctgattgtgtttatgtacttcaaaccatttcagatctgttcaacaatgaacaaattgttttgttgccaaacagttatgcatgttatgttacaagactatcaatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

274

Amino Acids

30.1

Weight (kDa)

5.9

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 3 cut(s) 27, 335, 623
AclI AACGTT 1 cut(s) 177
AcsI RAATTY 1 cut(s) 343
AfaI GTAC 4 cut(s) 264, 526, 655, 735
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 6 cut(s) 130, 456, 516, 550, 740, 760
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 4 cut(s) 16, 161, 410, 679
AluI AGCT 4 cut(s) 16, 161, 410, 679
Alw21I GWGCWC 2 cut(s) 412, 646
Alw44I GTGCAC 1 cut(s) 642
AoxI GGCC 1 cut(s) 313
ApaLI GTGCAC 1 cut(s) 642
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 343
AseI ATTAAT 1 cut(s) 696
AspLEI GCGC 2 cut(s) 7, 93
AspS9I GGNCC 1 cut(s) 483
AsuHPI GGTGA 2 cut(s) 16, 235
AvaII GGWCC 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 646
BanII GRGCYC 1 cut(s) 412
Bbv12I GWGCWC 2 cut(s) 412, 646
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 264
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 267
BclI TGATCA 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 267
BglII AGATCT 1 cut(s) 751
BisI GCNGC 2 cut(s) 14, 336
BlsI GCNGC 2 cut(s) 15, 337
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 3 cut(s) 73, 469, 555
BmrFI CCNGG 1 cut(s) 118
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 2 cut(s) 317, 455
BmuI ACTGGG 1 cut(s) 535
BpuEI CTTGAG 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 278
BsaJI CCNNGG 3 cut(s) 310, 590, 603
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 541
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 310, 590, 603
BseGI GGATG 4 cut(s) 234, 275, 279, 332
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 350
BseSI GKGCMC 1 cut(s) 646
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 412, 646
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 322
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 412, 646
Bsp143I GATC 3 cut(s) 57, 634, 751
BspACI CCGC 3 cut(s) 27, 335, 623
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 73, 469, 555
BspMAI CTGCAG 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 3 cut(s) 310, 590, 603
BssMI GATC 3 cut(s) 57, 634, 751
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 4 cut(s) 136, 203, 216, 791
Bst6I CTCTTC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 585
BstF5I GGATG 4 cut(s) 234, 275, 279, 332
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 93
BstKTI GATC 3 cut(s) 60, 637, 754
BstMBI GATC 3 cut(s) 57, 634, 751
BstMWI GCNNNNNNNGC 2 cut(s) 13, 467
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 801
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 11
BstSLI GKGCMC 1 cut(s) 646
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 751
BstYI RGATCY 1 cut(s) 751
BsuI GTATCC 1 cut(s) 267
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 4 cut(s) 234, 275, 279, 332
BtsI GCAGTG 2 cut(s) 60, 644
BtsIMutI CAGTG 4 cut(s) 60, 582, 644, 644
CciI TCATGA 1 cut(s) 42
CfoI GCGC 2 cut(s) 7, 93
Cfr13I GGNCC 1 cut(s) 483
Csp6I GTAC 4 cut(s) 263, 525, 654, 734
CviAII CATG 3 cut(s) 43, 704, 798
CviQI GTAC 4 cut(s) 263, 525, 654, 734
DdeI CTNAG 1 cut(s) 585
DpnI GATC 3 cut(s) 59, 636, 753
DpnII GATC 3 cut(s) 57, 634, 751
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 412
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 483
Eco53kI GAGCTC 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 116
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 2 cut(s) 448, 799
EcoT38I GRGCYC 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 3 cut(s) 46, 707, 801
FatI CATG 3 cut(s) 42, 703, 797
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 14, 336
FokI GGATG 4 cut(s) 221, 266, 282, 339
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 2 cut(s) 14, 336
GlaI GCGC 2 cut(s) 6, 92
GluI GCNGC 2 cut(s) 14, 336
GsaI CCCAGC 1 cut(s) 377
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 38
HhaI GCGC 2 cut(s) 7, 93
Hin1II CATG 3 cut(s) 46, 707, 801
Hin6I GCGC 2 cut(s) 5, 91
HinP1I GCGC 2 cut(s) 5, 91
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 4 cut(s) 34, 533, 563, 671
HpaII CCGG 1 cut(s) 38
HphI GGTGA 2 cut(s) 16, 235
Hpy166II GTNNAC 2 cut(s) 232, 644
Hpy188I TCNGA 4 cut(s) 311, 562, 721, 751
Hpy188III TCNNGA 4 cut(s) 43, 55, 413, 632
Hpy8I GTNNAC 2 cut(s) 232, 644
HpyAV CCTTC 2 cut(s) 256, 544
HpyCH4III ACNGT 4 cut(s) 136, 203, 216, 791
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 8 cut(s) 13, 65, 83, 446, 582, 644, 703, 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 467
HpyF3I CTNAG 1 cut(s) 585
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 3 cut(s) 46, 707, 801
HspAI GCGC 2 cut(s) 5, 91
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 3 cut(s) 57, 634, 751
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 5 cut(s) 77, 363, 407, 415, 467
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 2 cut(s) 317, 455
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 422, 805
MalI GATC 3 cut(s) 59, 636, 753
MboI GATC 3 cut(s) 57, 634, 751
MboII GAAGA 5 cut(s) 10, 122, 133, 504, 591
MflI RGATCY 1 cut(s) 751
MhlI GDGCHC 2 cut(s) 412, 646
MluCI AATT 4 cut(s) 284, 343, 697, 771
MlyI GAGTC 2 cut(s) 527, 665
Mph1103I ATGCAT 2 cut(s) 448, 799
MseI TTAA 4 cut(s) 96, 210, 696, 710
MslI CAYNNNNRTG 1 cut(s) 429
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 13, 467
NdeI CATATG 1 cut(s) 196
NdeII GATC 3 cut(s) 57, 634, 751
NlaIII CATG 3 cut(s) 46, 707, 801
NlaIV GGNNCC 3 cut(s) 73, 469, 555
NmeAIII GCCGAG 1 cut(s) 571
NmuCI GTSAC 1 cut(s) 422
NsiI ATGCAT 2 cut(s) 448, 799
NspI RCATGY 1 cut(s) 801
PagI TCATGA 1 cut(s) 42
PceI AGGCCT 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 34, 563
PkrI GCNGC 2 cut(s) 15, 337
PleI GAGTC 2 cut(s) 527, 665
PpsI GAGTC 2 cut(s) 527, 665
PshBI ATTAAT 1 cut(s) 696
Psp124BI GAGCTC 1 cut(s) 412
Psp1406I AACGTT 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 73, 469, 555
PspPI GGNCC 1 cut(s) 483
PstI CTGCAG 1 cut(s) 15
PsuI RGATCY 1 cut(s) 751
RsaI GTAC 4 cut(s) 264, 526, 655, 735
RsaNI GTAC 4 cut(s) 263, 525, 654, 734
RseI CAYNNNNRTG 1 cut(s) 429
SacI GAGCTC 1 cut(s) 412
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 4 cut(s) 96, 210, 696, 710
SatI GCNGC 2 cut(s) 14, 336
Sau3AI GATC 3 cut(s) 57, 634, 751
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 2 cut(s) 527, 665
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 412, 646
SetI ASST 8 cut(s) 18, 163, 180, 248, 301, 309, 412, 681
SfaNI GCATC 2 cut(s) 317, 455
SfcI CTRYAG 1 cut(s) 11
SinI GGWCC 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 4 cut(s) 284, 343, 697, 771
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 3 cut(s) 27, 335, 623
SspI AATATT 1 cut(s) 100
SstI GAGCTC 1 cut(s) 412
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 4 cut(s) 136, 203, 216, 791
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 32
TasI AATT 4 cut(s) 284, 343, 697, 771
TatI WGTACW 2 cut(s) 653, 733
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 2 cut(s) 34, 563
Tru1I TTAA 4 cut(s) 96, 210, 696, 710
Tru9I TTAA 4 cut(s) 96, 210, 696, 710
TscAI CASTG 4 cut(s) 67, 589, 644, 651
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 4 cut(s) 10, 59, 238, 780
TspRI CASTG 4 cut(s) 67, 589, 644, 651
VneI GTGCAC 1 cut(s) 642
VpaK11BI GGWCC 1 cut(s) 483
VspI ATTAAT 1 cut(s) 696
XapI RAATTY 1 cut(s) 343
XceI RCATGY 1 cut(s) 801
Zsp2I ATGCAT 2 cut(s) 448, 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.