Rroxscaffold_3G00242560

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000423
Physical Location & Seq
Reverse (-)
34975666 .. 34977603
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00242560.1

Sequence Viewer

Length: 816 bp
ATGGCGCTTTTGCAGCTCTTCATCACCGCGTCGATTCCGGTCTTGAAAGTGCTCTTGATCACTGCACTTGGCTCCTATCTTGCACTTGAGCGCGTTAATATTCTGGGGGAAGAAACCAGGAAGAACTTGAACACTGTTGTATTTTATGTATTCAGTCCAGCTCTGGTGGGAACTAACCTTGCCCAGACTATTACATATGACAGTATGATTAAACTGTGGTTTATGCCATTGAACATCTTAATCACCTTCATTGTTGGTTCTGTACTTGGATGGGTACTCATCCAATTAGCAAGACCGCCTCCACATCTCCGAGGTCTCATTTTGGGTTGCTGTGCGGCTGGAAATTTGGGGAACATGCTCCTCATTATAATCCCAGCAGTCTGTAAAGAAAAGGGAAGCCCATTTGGAGCTCCTGATGTCTGTCACACTTATGGAATGGCTTATGCATCACTTTCAATGGCAATAGGAGCCATTTATATTTGGTCCTATGTGTATAACATTGTGAGGATATCTTCAAAGAGGAGTACCGAAGACTCCCTCCAGTCTTTGGAAGAACCCTCCGAATCAAACCAAGTAAGTTGCACCGAGCCTCTGCTTTCTTCCAAGGAATATGGGATATTGGAGGACAATGCCGATCAGTATGCACTGCCCTGCACTATATCTCAACAAGACTCTAAGATTGTTGGGTTTGCAATCGGAGTCATCCCTCAGATTCGTAAACTAATGATAGGAGATGGTGCTCCTCTACGGGTGATCCAAGACACTACTAACTTGTTGGGGTATATAGCTTGTACAGAAACTGTACAAACTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

271

Amino Acids

29.51

Weight (kDa)

5.43

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 261 3.7e-45 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 547
AccII CGCG 2 cut(s) 29, 93
AciI CCGC 3 cut(s) 27, 296, 335
AclWI GGATC 1 cut(s) 748
AcsI RAATTY 1 cut(s) 343
AfaI GTAC 5 cut(s) 264, 276, 526, 793, 804
AfiI CCNNNNNNNGG 1 cut(s) 547
AgsI TTSAA 5 cut(s) 46, 130, 232, 456, 516
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 4 cut(s) 16, 161, 410, 788
AluI AGCT 4 cut(s) 16, 161, 410, 788
Alw21I GWGCWC 3 cut(s) 54, 412, 742
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 1 cut(s) 748
AlwNI CAGNNNCTG 1 cut(s) 800
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 343
AspLEI GCGC 2 cut(s) 7, 93
AspS9I GGNCC 1 cut(s) 483
AsuHPI GGTGA 3 cut(s) 16, 235, 763
AvaII GGWCC 1 cut(s) 483
BanII GRGCYC 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 537
Bbv12I GWGCWC 3 cut(s) 54, 412, 742
BbvI GCAGC 1 cut(s) 25
BccI CCATC 2 cut(s) 264, 728
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 1 cut(s) 118
BclI TGATCA 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 2 cut(s) 14, 336
BlsI GCNGC 2 cut(s) 15, 337
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 2 cut(s) 73, 469
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 537
BpmI CTGGAG 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 320
BsaJI CCNNGG 2 cut(s) 310, 603
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 547
Bse1I ACTGG 1 cut(s) 541
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 310, 603
BseGI GGATG 3 cut(s) 275, 279, 702
BseLI CCNNNNNNNGG 1 cut(s) 547
BseMII CTCAG 1 cut(s) 722
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 3 cut(s) 350, 535, 732
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 2 cut(s) 48, 637
Bsh1236I CGCG 2 cut(s) 29, 93
BsiHKAI GWGCWC 3 cut(s) 54, 412, 742
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 547
BsmAI GTCTC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 320
Bsp1286I GDGCHC 3 cut(s) 54, 412, 742
Bsp1407I TGTACA 2 cut(s) 791, 802
Bsp143I GATC 3 cut(s) 57, 634, 753
BspACI CCGC 3 cut(s) 27, 296, 335
BspCNI CTCAG 1 cut(s) 721
BspFNI CGCG 2 cut(s) 29, 93
BspLI GGNNCC 2 cut(s) 73, 469
BspPI GGATC 1 cut(s) 748
BspQI GCTCTTC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 320
BsrGI TGTACA 2 cut(s) 791, 802
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 2 cut(s) 310, 603
BssMI GATC 3 cut(s) 57, 634, 753
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 4 cut(s) 136, 203, 216, 802
Bst6I CTCTTC 1 cut(s) 23
BstAUI TGTACA 2 cut(s) 791, 802
BstDEI CTNAG 2 cut(s) 675, 708
BstF5I GGATG 3 cut(s) 275, 279, 702
BstFNI CGCG 2 cut(s) 29, 93
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 93
BstKTI GATC 3 cut(s) 60, 637, 756
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 3 cut(s) 57, 634, 753
BstMWI GCNNNNNNNGC 2 cut(s) 13, 467
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 1 cut(s) 116
BstUI CGCG 2 cut(s) 29, 93
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 537
BtsCI GGATG 3 cut(s) 275, 279, 702
BtsI GCAGTG 2 cut(s) 60, 644
BtsIMutI CAGTG 3 cut(s) 60, 132, 644
CaiI CAGNNNCTG 1 cut(s) 800
CfoI GCGC 2 cut(s) 7, 93
Cfr13I GGNCC 1 cut(s) 483
CseI GACGC 1 cut(s) 18
Csp6I GTAC 5 cut(s) 263, 275, 525, 792, 803
CviAII CATG 1 cut(s) 355
CviQI GTAC 5 cut(s) 263, 275, 525, 792, 803
DdeI CTNAG 2 cut(s) 675, 708
DpnI GATC 3 cut(s) 59, 636, 755
DpnII GATC 3 cut(s) 57, 634, 753
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 412
Eco31I GGTCTC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 483
Eco53kI GAGCTC 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 116
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 1 cut(s) 358
FatI CATG 1 cut(s) 354
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 14, 336
FokI GGATG 3 cut(s) 266, 282, 689
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 2 cut(s) 14, 336
GlaI GCGC 2 cut(s) 6, 92
GluI GCNGC 2 cut(s) 14, 336
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 1 cut(s) 524
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 18
HhaI GCGC 2 cut(s) 7, 93
Hin1II CATG 1 cut(s) 358
Hin6I GCGC 2 cut(s) 5, 91
HinP1I GCGC 2 cut(s) 5, 91
HinfI GANTC 6 cut(s) 34, 533, 563, 671, 699, 712
HpaII CCGG 1 cut(s) 38
HphI GGTGA 3 cut(s) 16, 235, 763
Hpy166II GTNNAC 1 cut(s) 719
Hpy188I TCNGA 4 cut(s) 311, 562, 698, 711
Hpy188III TCNNGA 3 cut(s) 43, 55, 413
Hpy8I GTNNAC 1 cut(s) 719
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 4 cut(s) 136, 203, 216, 802
HpyCH4V TGCA 8 cut(s) 13, 65, 83, 446, 582, 644, 654, 692
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 467
HpyF3I CTNAG 2 cut(s) 675, 708
Hsp92II CATG 1 cut(s) 358
HspAI GCGC 2 cut(s) 5, 91
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 3 cut(s) 57, 634, 753
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 6 cut(s) 77, 363, 407, 415, 467, 745
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 455
MaeIII GTNAC 1 cut(s) 422
MalI GATC 3 cut(s) 59, 636, 755
MboI GATC 3 cut(s) 57, 634, 753
MboII GAAGA 7 cut(s) 10, 122, 133, 504, 542, 563, 591
MhlI GDGCHC 3 cut(s) 54, 412, 742
MluCI AATT 2 cut(s) 284, 343
MlyI GAGTC 3 cut(s) 527, 665, 708
Mph1103I ATGCAT 1 cut(s) 448
MseI TTAA 3 cut(s) 96, 210, 239
MslI CAYNNNNRTG 1 cut(s) 429
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 2 cut(s) 29, 93
MwoI GCNNNNNNNGC 2 cut(s) 13, 467
NdeI CATATG 1 cut(s) 196
NdeII GATC 3 cut(s) 57, 634, 753
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 2 cut(s) 73, 469
NmuCI GTSAC 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 23
PfeI GAWTC 3 cut(s) 34, 563, 712
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 2 cut(s) 15, 337
PleI GAGTC 3 cut(s) 527, 665, 707
PpsI GAGTC 3 cut(s) 527, 665, 707
PsiI TTATAA 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 73, 469
PspPI GGNCC 1 cut(s) 483
PstNI CAGNNNCTG 1 cut(s) 800
RsaI GTAC 5 cut(s) 264, 276, 526, 793, 804
RsaNI GTAC 5 cut(s) 263, 275, 525, 792, 803
RseI CAYNNNNRTG 1 cut(s) 429
SacI GAGCTC 1 cut(s) 412
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 96, 210, 239
SatI GCNGC 2 cut(s) 14, 336
Sau3AI GATC 3 cut(s) 57, 634, 753
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 3 cut(s) 527, 665, 708
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 3 cut(s) 54, 412, 742
SetI ASST 7 cut(s) 18, 163, 180, 248, 316, 412, 790
SfaNI GCATC 1 cut(s) 455
SinI GGWCC 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 284, 343
SsiI CCGC 3 cut(s) 27, 296, 335
SspI AATATT 1 cut(s) 100
SstI GAGCTC 1 cut(s) 412
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 4 cut(s) 136, 203, 216, 802
TaqI TCGA 1 cut(s) 32
TasI AATT 2 cut(s) 284, 343
TatI WGTACW 3 cut(s) 262, 791, 802
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 3 cut(s) 34, 563, 712
Tru1I TTAA 3 cut(s) 96, 210, 239
Tru9I TTAA 3 cut(s) 96, 210, 239
TscAI CASTG 3 cut(s) 67, 139, 651
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 10, 238
TspRI CASTG 3 cut(s) 67, 139, 651
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 483
XapI RAATTY 1 cut(s) 343
XceI RCATGY 1 cut(s) 358
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.