Rmu_sc0003132.1_g000001

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003132.1
OG0000423
Physical Location & Seq
Forward (+)
1 .. 2027
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003132.1_g000001.1.cds

Sequence Viewer

Length: 804 bp
gatacctgtgatactactggaactacttatgcttcactttcaatggcgattggagccatttatttgtggacctatgtgtataatattgtgcggatatcttcaaagatgagcgtccaagattccctgcagaccaccgacagctcgtcaacatccagccacataagttacaccgagcctctactttctatagaggacaatgtggatcaatgtgaacctccccgtaatgtatccgaaggagatgctaagatgacatgtctaggtaaaacaaaggaatggatggtgatggtgaatgaaaagctcaatttgaaaacagtattttccccttcaactattgcagtgattattgggtttgcagttggaatcatctctccaattcgaaacttattgattggagacgacgctcctctagcggtgatcgacgacactacttcgttgttaggagatgctgctatcccgcttcttactttgataataggaggcaaccttgttaaaggtttgagagtgggagggatacaaaaatctatccttattggcatcataattgttaaatatgttgcggcgcctcttacaggaatattgattgttaaaggggcagtaaaatttggctttgtaagcaatgatccattgtatctgtttgttcttctgcttcagtttgctgtccctcctgcaatgaacttgggaaccatcactcaactgttcggacaaggagagagtgagtgttcagttatcatgctctggacttacatttttgcttcgctatcgcttacgttttggtgtgccttcttcttgtggcttgtggcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

267

Amino Acids

28.82

Weight (kDa)

4.73

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 559
AciI CCGC 4 cut(s) 91, 410, 455, 557
AclWI GGATC 2 cut(s) 210, 614
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 1 cut(s) 632
AcyI GRCGYC 1 cut(s) 560
AfiI CCNNNNNNNGG 1 cut(s) 569
AflIII ACRYGT 1 cut(s) 251
AgsI TTSAA 4 cut(s) 42, 102, 307, 327
AhdI GACNNNNNGTC 1 cut(s) 142
AluBI AGCT 2 cut(s) 141, 298
AluI AGCT 2 cut(s) 141, 298
Alw26I GTCTC 1 cut(s) 387
AlwI GGATC 2 cut(s) 210, 614
AoxI GGCC 1 cut(s) 798
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 1 cut(s) 599
AspLEI GCGC 1 cut(s) 562
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 3 cut(s) 292, 298, 424
AsuII TTCGAA 1 cut(s) 376
AvaII GGWCC 1 cut(s) 69
BanI GGYRCC 1 cut(s) 559
BbvI GCAGC 1 cut(s) 433
BccI CCATC 3 cut(s) 271, 277, 692
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciVI GTATCC 2 cut(s) 238, 504
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 2 cut(s) 257, 407
BfmI CTRYAG 2 cut(s) 125, 186
BfoI RGCGCY 1 cut(s) 563
BfuI GTATCC 2 cut(s) 238, 504
BisI GCNGC 2 cut(s) 447, 558
BlsI GCNGC 2 cut(s) 448, 559
Bme18I GGWCC 1 cut(s) 69
BmeRI GACNNNNNGTC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 3 cut(s) 55, 561, 682
BmsI GCATC 3 cut(s) 229, 433, 543
Bpu14I TTCGAA 1 cut(s) 376
BsaHI GRCGYC 1 cut(s) 560
Bsc4I CCNNNNNNNGG 1 cut(s) 569
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 2 cut(s) 622, 675
BseGI GGATG 2 cut(s) 149, 282
BseLI CCNNNNNNNGG 1 cut(s) 569
BseMI GCAATG 2 cut(s) 622, 675
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 1 cut(s) 433
BshFI GGCC 1 cut(s) 800
BshNI GGYRCC 1 cut(s) 559
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 1 cut(s) 569
BsmAI GTCTC 1 cut(s) 387
BsmBI CGTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 1 cut(s) 800
Bsp119I TTCGAA 1 cut(s) 376
Bsp143I GATC 3 cut(s) 202, 414, 619
BspACI CCGC 4 cut(s) 91, 410, 455, 557
BspANI GGCC 1 cut(s) 800
BspLI GGNNCC 3 cut(s) 55, 561, 682
BspMAI CTGCAG 1 cut(s) 129
BspPI GGATC 2 cut(s) 210, 614
BspT104I TTCGAA 1 cut(s) 376
BspT107I GGYRCC 1 cut(s) 559
BsrDI GCAATG 2 cut(s) 622, 675
BsrI ACTGG 1 cut(s) 22
BssMI GATC 3 cut(s) 202, 414, 619
BssNI GRCGYC 1 cut(s) 560
Bst4CI ACNGT 2 cut(s) 313, 696
BstACI GRCGYC 1 cut(s) 560
BstBI TTCGAA 1 cut(s) 376
BstDEI CTNAG 1 cut(s) 243
BstENI CCTNNNNNAGG 1 cut(s) 567
BstF5I GGATG 2 cut(s) 149, 282
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 3 cut(s) 205, 417, 622
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 3 cut(s) 202, 414, 619
BstMWI GCNNNNNNNGC 3 cut(s) 53, 407, 612
BstNSI RCATGY 1 cut(s) 255
BstSFI CTRYAG 2 cut(s) 125, 186
BstV1I GCAGC 1 cut(s) 433
BsuI GTATCC 2 cut(s) 238, 504
BsuRI GGCC 1 cut(s) 800
BtsCI GGATG 2 cut(s) 149, 282
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 342
CfoI GCGC 1 cut(s) 562
Cfr13I GGNCC 1 cut(s) 69
CseI GACGC 2 cut(s) 100, 407
CviAII CATG 2 cut(s) 252, 730
CviJI RGCY 8 cut(s) 56, 141, 156, 175, 298, 606, 793, 800
CviKI_1 RGCY 8 cut(s) 56, 141, 156, 175, 298, 606, 793, 800
DdeI CTNAG 1 cut(s) 243
DinI GGCGCC 1 cut(s) 561
DpnI GATC 3 cut(s) 204, 416, 621
DpnII GATC 3 cut(s) 202, 414, 619
DriI GACNNNNNGTC 1 cut(s) 142
Eam1105I GACNNNNNGTC 1 cut(s) 142
Eco32I GATATC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 632
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoRV GATATC 1 cut(s) 96
EgeI GGCGCC 1 cut(s) 561
EheI GGCGCC 1 cut(s) 561
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 2 cut(s) 255, 733
FaiI YATR 9 cut(s) 30, 75, 81, 161, 188, 253, 539, 552, 731
FaqI GGGAC 1 cut(s) 644
FatI CATG 2 cut(s) 251, 729
FauI CCCGC 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 447, 558
FokI GGATG 2 cut(s) 136, 289
Fsp4HI GCNGC 2 cut(s) 447, 558
FspBI CTAG 2 cut(s) 257, 407
GlaI GCGC 1 cut(s) 561
GluI GCNGC 2 cut(s) 447, 558
HaeII RGCGCY 1 cut(s) 563
HaeIII GGCC 1 cut(s) 800
HgaI GACGC 2 cut(s) 100, 407
HhaI GCGC 1 cut(s) 562
Hin1I GRCGYC 1 cut(s) 560
Hin1II CATG 2 cut(s) 255, 733
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HinfI GANTC 2 cut(s) 119, 360
HphI GGTGA 3 cut(s) 292, 298, 424
Hpy166II GTNNAC 3 cut(s) 69, 147, 212
Hpy188I TCNGA 2 cut(s) 232, 701
Hpy188III TCNNGA 1 cut(s) 736
Hpy8I GTNNAC 3 cut(s) 69, 147, 212
Hpy99I CGWCG 2 cut(s) 401, 422
HpyAV CCTTC 3 cut(s) 227, 333, 790
HpyCH4III ACNGT 2 cut(s) 313, 696
HpyCH4IV ACGT 1 cut(s) 767
HpyCH4V TGCA 4 cut(s) 127, 335, 353, 668
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 407, 612
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 767
Hsp92I GRCGYC 1 cut(s) 560
Hsp92II CATG 2 cut(s) 255, 733
HspAI GCGC 1 cut(s) 560
KasI GGCGCC 1 cut(s) 559
Kzo9I GATC 3 cut(s) 202, 414, 619
LmnI GCTCC 2 cut(s) 53, 406
LpnPI CCDG 7 cut(s) 3, 19, 137, 166, 555, 678, 721
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 3 cut(s) 229, 433, 543
MaeI CTAG 2 cut(s) 257, 407
MaeII ACGT 1 cut(s) 767
MaeIII GTNAC 1 cut(s) 164
MalI GATC 3 cut(s) 204, 416, 621
MboI GATC 3 cut(s) 202, 414, 619
MboII GAAGA 3 cut(s) 90, 632, 775
MluCI AATT 4 cut(s) 301, 372, 540, 599
Mly113I GGCGCC 1 cut(s) 560
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 8 cut(s) 184, 186, 225, 414, 470, 500, 573, 672
MseI TTAA 3 cut(s) 489, 546, 585
MwoI GCNNNNNNNGC 3 cut(s) 53, 407, 612
NarI GGCGCC 1 cut(s) 560
NdeII GATC 3 cut(s) 202, 414, 619
NlaIII CATG 2 cut(s) 255, 733
NlaIV GGNNCC 3 cut(s) 55, 561, 682
NspI RCATGY 1 cut(s) 255
NspV TTCGAA 1 cut(s) 376
PciI ACATGT 1 cut(s) 251
PfeI GAWTC 2 cut(s) 119, 360
PkrI GCNGC 2 cut(s) 448, 559
PluTI GGCGCC 1 cut(s) 563
PscI ACATGT 1 cut(s) 251
PspN4I GGNNCC 3 cut(s) 55, 561, 682
PspPI GGNCC 1 cut(s) 69
PstI CTGCAG 1 cut(s) 129
SaqAI TTAA 3 cut(s) 489, 546, 585
SatI GCNGC 2 cut(s) 447, 558
Sau3AI GATC 3 cut(s) 202, 414, 619
Sau96I GGNCC 1 cut(s) 69
SetI ASST 9 cut(s) 8, 74, 143, 217, 262, 300, 486, 496, 770
SfaNI GCATC 3 cut(s) 229, 433, 543
SfcI CTRYAG 2 cut(s) 125, 186
SfoI GGCGCC 1 cut(s) 561
SfuI TTCGAA 1 cut(s) 376
SinI GGWCC 1 cut(s) 69
Sse9I AATT 4 cut(s) 301, 372, 540, 599
SsiI CCGC 4 cut(s) 91, 410, 455, 557
SspDI GGCGCC 1 cut(s) 559
SspI AATATT 2 cut(s) 85, 576
SspMI CTAG 2 cut(s) 257, 407
TaaI ACNGT 2 cut(s) 313, 696
TaiI ACGT 1 cut(s) 770
TaqI TCGA 2 cut(s) 376, 417
TasI AATT 4 cut(s) 301, 372, 540, 599
TauI GCSGC 1 cut(s) 560
TfiI GAWTC 2 cut(s) 119, 360
Tru1I TTAA 3 cut(s) 489, 546, 585
Tru9I TTAA 3 cut(s) 489, 546, 585
TscAI CASTG 1 cut(s) 342
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 306, 686
TspRI CASTG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 69
XagI CCTNNNNNAGG 1 cut(s) 567
XapI RAATTY 1 cut(s) 599
XceI RCATGY 1 cut(s) 255
XspI CTAG 2 cut(s) 257, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.