FvH4_5g26311

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000423
Physical Location & Seq
Forward (+)
17830829 .. 17836830
6002 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26311.t4

Sequence Viewer

Length: 1146 bp
ATGAAGATGAAGCTTTTGCAGCTCTTCATCACTGCATCCATTCCAGTCTTGAAAACCCTATTGATTACTGCCCTTGGCTCATATCTTGCTACAGAACGCGTCAATATTCTGGGTGAAGATACTAGGAAGCACTTAAACAGTGTTGCATTTTTCGTGTTCAACCCAGCCTTGGTTGGTTCCAGCCTTGCTGAGACCATAACATATGACAGTATGATCAAGCTGTGGTTCATGCCTGTGAACATCCTACTGACCTTTGTTGTTGGTTCAATATTTGGATGGATACTCAACTTATTAACAAGAACTCCTCCACATCTGCGAGGCCTTATTATGGGTTTCTGTGCTGCTGGAAATTTAGGGAACTTGCTCCTCATTATAATTCCGGCTGTTTGTAAAGAAAAAGGGAGTCCATTTGGAGCTGCTGATGTTTGTTATACTTCTGGAATGGCATATGCTTCACTTTCAATGGCGATATCTGCTGTTTATTTGTGGTCCTATGTTTATAATATTATGAGGATAGCTTCAAAGAGAAACACTCTTGATCAAGACACGATCCAATCTTTGGAAAGATCCTCCATAACAAACCAAATCATGGCACCTCCGGGCAAACTAAAGAACCGTGTAATGAAGGTGGTTAAGAAGCTCAATCTAGAAACGATCTTTTCCCCCTCAATAGTTGCAGCGATCATCGGCTTTGTAATCGGAGTCGTCCCTCCCGTTCGAAAAGTATTCATAGATGATGGCGCTCCTCTACGGGTGATTAATGACACTGTTTCCTTGTTGGGTGGTGGAGCTATCCCTACCGTCACTCTGATTATAGGAGGAAACCTTCTTAAAGGTCTAAGAGGGTCTGGGATACAAACTTCTCTCGTTATCGGCGTCATCATTGTTCGTTATGTTGCGCTGCCTCTCACCGGCATATTGATCGTTAAAGGGGCAATGAAATTTGGCTTAGTACACTCTGATCCGTTGTATCTGTTTGTTCTTCTCCTTCAATTTTCACTCCCACCTGCAGTGAACATAGCAACCATCACTCAATTGTTCGGAGCAGGAGAGAAGGAGTGTTCAGTTATCATGCTATGGACTTATGTTCTTGCTTCTGTAGCGCTTACGTTTTGGTCTGCCTTCTTCATGTGGCTTGTCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

382

Amino Acids

41.33

Weight (kDa)

9.65

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 12 - 262 1.7e-49 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 374, 501
AarI CACCTGC 1 cut(s) 1015
Acc36I ACCTGC 1 cut(s) 1015
AccB1I GGYRCC 1 cut(s) 592
AccB7I CCANNNNNTGG 2 cut(s) 559, 589
AccII CGCG 1 cut(s) 99
AclWI GGATC 3 cut(s) 544, 561, 956
AcsI RAATTY 2 cut(s) 349, 941
AcyI GRCGYC 1 cut(s) 876
AfaI GTAC 1 cut(s) 954
AfeI AGCGCT 1 cut(s) 1104
AfiI CCNNNNNNNGG 5 cut(s) 169, 328, 559, 589, 911
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 6 cut(s) 52, 160, 267, 462, 522, 992
AluBI AGCT 7 cut(s) 13, 22, 220, 416, 518, 640, 791
AluI AGCT 7 cut(s) 13, 22, 220, 416, 518, 640, 791
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 3 cut(s) 544, 561, 956
Aor51HI AGCGCT 1 cut(s) 1104
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 5 cut(s) 19, 341, 416, 677, 901
ApoI RAATTY 2 cut(s) 349, 941
AseI ATTAAT 1 cut(s) 759
AspLEI GCGC 3 cut(s) 743, 901, 1105
AspS9I GGNCC 1 cut(s) 489
AsuC2I CCSGG 1 cut(s) 600
AsuHPI GGTGA 3 cut(s) 125, 766, 901
AsuII TTCGAA 1 cut(s) 718
AvaII GGWCC 1 cut(s) 489
BanI GGYRCC 1 cut(s) 592
BbvI GCAGC 5 cut(s) 31, 328, 403, 689, 888
BccI CCATC 3 cut(s) 270, 731, 1034
BcgI CGANNNNNNTGC 2 cut(s) 904, 938
BciVI GTATCC 2 cut(s) 273, 846
BclI TGATCA 2 cut(s) 213, 538
BcnI CCSGG 1 cut(s) 600
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 2 cut(s) 123, 647
BfmI CTRYAG 3 cut(s) 90, 1008, 1098
BfoI RGCGCY 2 cut(s) 744, 1106
BfuAI ACCTGC 1 cut(s) 1015
BfuI GTATCC 2 cut(s) 273, 846
BisI GCNGC 5 cut(s) 20, 342, 417, 678, 902
BlsI GCNGC 5 cut(s) 21, 343, 418, 679, 903
Bme1390I CCNGG 1 cut(s) 600
Bme18I GGWCC 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 2 cut(s) 178, 594
BmrFI CCNGG 1 cut(s) 600
BmsI GCATC 1 cut(s) 44
BplI GAGNNNNNCTC 2 cut(s) 517, 549
Bpu14I TTCGAA 1 cut(s) 718
BpuMI CCSGG 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 876
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 73, 168
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 5 cut(s) 169, 328, 559, 589, 911
Bse118I RCCGGY 1 cut(s) 911
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 942
BseDI CCNNGG 2 cut(s) 73, 168
BseGI GGATG 3 cut(s) 35, 240, 281
BseLI CCNNNNNNNGG 5 cut(s) 169, 328, 559, 589, 911
BseMI GCAATG 1 cut(s) 942
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 3 cut(s) 294, 356, 735
BseXI GCAGC 5 cut(s) 31, 328, 403, 689, 888
BseYI CCCAGC 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 321
BshNI GGYRCC 1 cut(s) 592
BsiSI CCGG 3 cut(s) 380, 599, 912
BslFI GGGAC 1 cut(s) 692
BslI CCNNNNNNNGG 5 cut(s) 169, 328, 559, 589, 911
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 692
BsnI GGCC 1 cut(s) 321
Bso31I GGTCTC 1 cut(s) 185
Bsp119I TTCGAA 1 cut(s) 718
Bsp143I GATC 8 cut(s) 213, 538, 549, 566, 654, 681, 921, 961
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 178, 594
BspMAI CTGCAG 1 cut(s) 1012
BspMI ACCTGC 1 cut(s) 1015
BspPI GGATC 3 cut(s) 544, 561, 956
BspQI GCTCTTC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 718
BspT107I GGYRCC 1 cut(s) 592
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 942
BsrFI RCCGGY 1 cut(s) 911
BsrI ACTGG 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 911
BssECI CCNNGG 2 cut(s) 73, 168
BssMI GATC 8 cut(s) 213, 538, 549, 566, 654, 681, 921, 961
BssNI GRCGYC 1 cut(s) 876
BssT1I CCWWGG 2 cut(s) 73, 168
Bst4CI ACNGT 5 cut(s) 140, 209, 617, 769, 802
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 876
BstBI TTCGAA 1 cut(s) 718
BstDEI CTNAG 3 cut(s) 189, 839, 949
BstF5I GGATG 3 cut(s) 35, 240, 281
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 2 cut(s) 744, 1106
BstHHI GCGC 3 cut(s) 743, 901, 1105
BstKTI GATC 8 cut(s) 216, 541, 552, 569, 657, 684, 924, 964
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 8 cut(s) 213, 538, 549, 566, 654, 681, 921, 961
BstMWI GCNNNNNNNGC 3 cut(s) 19, 473, 1100
BstSCI CCNGG 1 cut(s) 598
BstSFI CTRYAG 3 cut(s) 90, 1008, 1098
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 5 cut(s) 31, 328, 403, 689, 888
BstX2I RGATCY 1 cut(s) 566
BstYI RGATCY 1 cut(s) 566
BsuI GTATCC 2 cut(s) 273, 846
BsuRI GGCC 1 cut(s) 321
BtsCI GGATG 3 cut(s) 35, 240, 281
BtsI GCAGTG 2 cut(s) 30, 1017
BtsIMutI CAGTG 4 cut(s) 30, 145, 765, 1017
BveI ACCTGC 1 cut(s) 1015
CfoI GCGC 3 cut(s) 743, 901, 1105
Cfr10I RCCGGY 1 cut(s) 911
Cfr13I GGNCC 1 cut(s) 489
CseI GACGC 2 cut(s) 88, 865
Csp6I GTAC 1 cut(s) 953
CviAII CATG 4 cut(s) 229, 589, 1072, 1129
CviQI GTAC 1 cut(s) 953
DdeI CTNAG 3 cut(s) 189, 839, 949
DpnI GATC 8 cut(s) 215, 540, 551, 568, 656, 683, 923, 963
DpnII GATC 8 cut(s) 213, 538, 549, 566, 654, 681, 921, 961
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 2 cut(s) 73, 168
Eco147I AGGCCT 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 185
Eco32I GATATC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 489
Eco47III AGCGCT 1 cut(s) 1104
EcoRV GATATC 1 cut(s) 471
EcoT14I CCWWGG 2 cut(s) 73, 168
ErhI CCWWGG 2 cut(s) 73, 168
FaeI CATG 4 cut(s) 232, 592, 1075, 1132
FaqI GGGAC 1 cut(s) 692
FatI CATG 4 cut(s) 228, 588, 1071, 1128
FauNDI CATATG 2 cut(s) 202, 448
FbaI TGATCA 2 cut(s) 213, 538
Fnu4HI GCNGC 5 cut(s) 20, 342, 417, 678, 902
FokI GGATG 3 cut(s) 22, 227, 288
Fsp4HI GCNGC 5 cut(s) 20, 342, 417, 678, 902
FspBI CTAG 2 cut(s) 123, 647
GlaI GCGC 3 cut(s) 742, 900, 1104
GluI GCNGC 5 cut(s) 20, 342, 417, 678, 902
GsaI CCCAGC 1 cut(s) 167
HaeII RGCGCY 2 cut(s) 744, 1106
HaeIII GGCC 1 cut(s) 321
HapII CCGG 3 cut(s) 380, 599, 912
HgaI GACGC 2 cut(s) 88, 865
HhaI GCGC 3 cut(s) 743, 901, 1105
Hin1I GRCGYC 1 cut(s) 876
Hin1II CATG 4 cut(s) 232, 592, 1075, 1132
Hin6I GCGC 3 cut(s) 741, 899, 1103
HinP1I GCGC 3 cut(s) 741, 899, 1103
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 2 cut(s) 403, 702
HpaII CCGG 3 cut(s) 380, 599, 912
HphI GGTGA 3 cut(s) 125, 766, 901
Hpy166II GTNNAC 3 cut(s) 238, 955, 1015
Hpy188I TCNGA 4 cut(s) 701, 810, 961, 1043
Hpy188III TCNNGA 5 cut(s) 49, 438, 536, 542, 647
Hpy8I GTNNAC 3 cut(s) 238, 955, 1015
HpyAV CCTTC 5 cut(s) 619, 836, 998, 1048, 1132
HpyCH4III ACNGT 5 cut(s) 140, 209, 617, 769, 802
HpyCH4IV ACGT 1 cut(s) 1109
HpyCH4V TGCA 5 cut(s) 19, 35, 146, 677, 1010
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 473, 1100
HpyF3I CTNAG 3 cut(s) 189, 839, 949
HpySE526I ACGT 1 cut(s) 1109
Hsp92I GRCGYC 1 cut(s) 876
Hsp92II CATG 4 cut(s) 232, 592, 1075, 1132
HspAI GCGC 3 cut(s) 741, 899, 1103
Ksp22I TGATCA 2 cut(s) 213, 538
Kzo9I GATC 8 cut(s) 213, 538, 549, 566, 654, 681, 921, 961
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 5 cut(s) 369, 413, 748, 788, 1043
Lsp1109I GCAGC 5 cut(s) 31, 328, 403, 689, 888
LweI GCATC 1 cut(s) 44
MaeI CTAG 2 cut(s) 123, 647
MaeII ACGT 1 cut(s) 1109
MaeIII GTNAC 1 cut(s) 802
MalI GATC 8 cut(s) 215, 540, 551, 568, 656, 683, 923, 963
MboI GATC 8 cut(s) 213, 538, 549, 566, 654, 681, 921, 961
MboII GAAGA 5 cut(s) 16, 16, 128, 974, 1117
MfeI CAATTG 1 cut(s) 1034
MflI RGATCY 1 cut(s) 566
MluCI AATT 5 cut(s) 349, 375, 941, 992, 1034
MluI ACGCGT 1 cut(s) 97
MlyI GAGTC 2 cut(s) 412, 711
MseI TTAA 6 cut(s) 134, 293, 633, 759, 831, 927
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 3 cut(s) 380, 599, 912
MspR9I CCNGG 1 cut(s) 600
MunI CAATTG 1 cut(s) 1034
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 19, 473, 1100
NciI CCSGG 1 cut(s) 600
NdeI CATATG 2 cut(s) 202, 448
NdeII GATC 8 cut(s) 213, 538, 549, 566, 654, 681, 921, 961
NlaIII CATG 4 cut(s) 232, 592, 1075, 1132
NlaIV GGNNCC 2 cut(s) 178, 594
NmuCI GTSAC 1 cut(s) 802
NspV TTCGAA 1 cut(s) 718
PaqCI CACCTGC 1 cut(s) 1015
PceI AGGCCT 1 cut(s) 321
PciSI GCTCTTC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 2 cut(s) 711, 873
PflMI CCANNNNNTGG 2 cut(s) 559, 589
PkrI GCNGC 5 cut(s) 21, 343, 418, 679, 903
PleI GAGTC 2 cut(s) 411, 710
PpsI GAGTC 2 cut(s) 411, 710
PshBI ATTAAT 1 cut(s) 759
PsiI TTATAA 2 cut(s) 374, 501
PspFI CCCAGC 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 178, 594
PspPI GGNCC 1 cut(s) 489
PstI CTGCAG 1 cut(s) 1012
PsuI RGATCY 1 cut(s) 566
RsaI GTAC 1 cut(s) 954
RsaNI GTAC 1 cut(s) 953
RseI CAYNNNNRTG 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 6 cut(s) 134, 293, 633, 759, 831, 927
SatI GCNGC 5 cut(s) 20, 342, 417, 678, 902
Sau3AI GATC 8 cut(s) 213, 538, 549, 566, 654, 681, 921, 961
Sau96I GGNCC 1 cut(s) 489
SchI GAGTC 2 cut(s) 412, 711
ScrFI CCNGG 1 cut(s) 600
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 3 cut(s) 90, 1008, 1098
SfuI TTCGAA 1 cut(s) 718
SinI GGWCC 1 cut(s) 489
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 5 cut(s) 349, 375, 941, 992, 1034
SseBI AGGCCT 1 cut(s) 321
SspI AATATT 3 cut(s) 106, 270, 505
SspMI CTAG 2 cut(s) 123, 647
StuI AGGCCT 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 598
StyI CCWWGG 2 cut(s) 73, 168
TaaI ACNGT 5 cut(s) 140, 209, 617, 769, 802
TaiI ACGT 1 cut(s) 1112
TaqI TCGA 1 cut(s) 718
TasI AATT 5 cut(s) 349, 375, 941, 992, 1034
TatI WGTACW 1 cut(s) 952
Tru1I TTAA 6 cut(s) 134, 293, 633, 759, 831, 927
Tru9I TTAA 6 cut(s) 134, 293, 633, 759, 831, 927
TscAI CASTG 4 cut(s) 37, 145, 772, 1017
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 5 cut(s) 19, 341, 416, 677, 901
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 8 cut(s) 16, 17, 23, 217, 638, 718, 953, 1117
TspGWI ACGGA 1 cut(s) 954
TspRI CASTG 4 cut(s) 37, 145, 772, 1017
Van91I CCANNNNNTGG 2 cut(s) 559, 589
VpaK11BI GGWCC 1 cut(s) 489
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 2 cut(s) 349, 941
XbaI TCTAGA 1 cut(s) 646
XspI CTAG 2 cut(s) 123, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.