pycom05g20790

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000423
Physical Location & Seq
Forward (+)
23548002 .. 23549700
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g20790.4

Sequence Viewer

Length: 810 bp
ATGTCTAGAACATCTACAATTATACATACAGATTGTACTACCCCCAAACGGCCAGGTACAGTTCTTAAACGGTGTTTGTGTGCGCCTGCTTGCTGTGTAGAATACGTTTTTCTGAACATATTTTCTTTTGTCCTTCTTTTCCTCTTGAATTCTGGTGACTGTTTCTCTTCAGTACAATGTAGCTTCCTTGTTCAGCTGTCAGGGATTCCTATCTTTGCCTTTTGTAATGTAATTGTGTCCATGCTTCAGGTAGGAGACTTTTATGTGTGGTCCTATGTGTATAATATTGTGCGGATATCTTCAAGAAGGGGCAACCAAGATTATAATCAGTCCGCGGAGAGGTCCTCTACATCCGACCAAGCAACTACTTCAGGTAAACTAGAGCAACGTATAGTGATGGTCTTTCAAAAGATCAATCTGAAATCAATATTTGCCCCTTCAACTGTTGGAGCGCTTGTTGGTTTTCCAATCGGAGTCATCCCTCAGATTCGAAAATTATTTTTAGGAGATGGTGCTCCTCTACGGGTGATTCAAGATACTGCTTATTTGTTGGGAGACGGAGCCATCCCATCTCTCATTTTGATAATAGGAGGAAACCTACTTAAAGGTTTTCGAGGGTCAGGGATTCAGAAATCTCTTGTCGTTGGCATCATAGTTGTTCGTTATGTTGCCCTGCCTCTTATAGGCATCTTGGTTGTTAAAGGGGCACTGAAATTTGGGTTGGTGCACTCTGATCCATTATATCTGTTTGTTCTTCTGCTTCAGTTTTCACTCCCACCTGCGATGAACATAGGTACGCTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

270

Amino Acids

29.23

Weight (kDa)

9.37

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AarI CACCTGC 1 cut(s) 787
Acc36I ACCTGC 1 cut(s) 787
AccII CGCG 1 cut(s) 335
AciI CCGC 3 cut(s) 292, 333, 335
AclWI GGATC 1 cut(s) 728
AcoI YGGCCR 1 cut(s) 50
AcsI RAATTY 2 cut(s) 148, 713
AcuI CTGAAG 4 cut(s) 153, 230, 354, 746
AfaI GTAC 4 cut(s) 37, 58, 174, 796
AfeI AGCGCT 1 cut(s) 453
AfiI CCNNNNNNNGG 3 cut(s) 48, 339, 683
AgsI TTSAA 5 cut(s) 148, 303, 407, 441, 533
AjnI CCWGG 1 cut(s) 52
AjuI GAANNNNNNNTTGG 2 cut(s) 704, 736
AluBI AGCT 2 cut(s) 183, 196
AluI AGCT 2 cut(s) 183, 196
Alw21I GWGCWC 2 cut(s) 517, 729
Alw26I GTCTC 2 cut(s) 249, 549
Alw44I GTGCAC 1 cut(s) 725
AlwI GGATC 1 cut(s) 728
Aor51HI AGCGCT 1 cut(s) 453
AoxI GGCC 1 cut(s) 50
ApaLI GTGCAC 1 cut(s) 725
ApoI RAATTY 2 cut(s) 148, 713
AspLEI GCGC 2 cut(s) 85, 454
AspS9I GGNCC 2 cut(s) 270, 342
AsuHPI GGTGA 2 cut(s) 167, 538
AsuII TTCGAA 1 cut(s) 490
AvaII GGWCC 2 cut(s) 270, 342
BaeGI GKGCMC 2 cut(s) 709, 729
Bbv12I GWGCWC 2 cut(s) 517, 729
BccI CCATC 4 cut(s) 391, 503, 572, 577
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 249, 549
BfaI CTAG 2 cut(s) 6, 380
BfoI RGCGCY 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 787
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 2 cut(s) 270, 342
BmgT120I GGNCC 2 cut(s) 270, 342
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 1 cut(s) 54
BmsI GCATC 2 cut(s) 657, 696
BplI GAGNNNNNCTC 2 cut(s) 329, 361
Bpu14I TTCGAA 1 cut(s) 490
BsaBI GATNNNNATC 2 cut(s) 209, 324
BsaJI CCNNGG 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 339, 683
Bse8I GATNNNNATC 2 cut(s) 209, 324
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 3 cut(s) 350, 477, 564
BseJI GATNNNNATC 2 cut(s) 209, 324
BseLI CCNNNNNNNGG 3 cut(s) 48, 339, 683
BseMII CTCAG 1 cut(s) 497
BseRI GAGGAG 1 cut(s) 507
BseSI GKGCMC 2 cut(s) 709, 729
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 1 cut(s) 52
BsiHKAI GWGCWC 2 cut(s) 517, 729
BslI CCNNNNNNNGG 3 cut(s) 48, 339, 683
BsmAI GTCTC 2 cut(s) 249, 549
BsmBI CGTCTC 1 cut(s) 549
BsnI GGCC 1 cut(s) 52
Bsp119I TTCGAA 1 cut(s) 490
Bsp1286I GDGCHC 3 cut(s) 517, 709, 729
Bsp143I GATC 2 cut(s) 411, 733
BspACI CCGC 3 cut(s) 292, 333, 335
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 496
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 562
BspMI ACCTGC 1 cut(s) 787
BspPI GGATC 1 cut(s) 728
BspT104I TTCGAA 1 cut(s) 490
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 2 cut(s) 411, 733
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 4 cut(s) 61, 72, 161, 445
Bst6I CTCTTC 1 cut(s) 172
BstBI TTCGAA 1 cut(s) 490
BstC8I GCNNGC 3 cut(s) 87, 91, 801
BstDEI CTNAG 1 cut(s) 483
BstDSI CCRYGG 1 cut(s) 333
BstENI CCTNNNNNAGG 1 cut(s) 681
BstF5I GGATG 3 cut(s) 350, 477, 564
BstFNI CGCG 1 cut(s) 335
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 2 cut(s) 85, 454
BstKTI GATC 2 cut(s) 414, 736
BstMAI GTCTC 2 cut(s) 249, 549
BstMBI GATC 2 cut(s) 411, 733
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstSLI GKGCMC 2 cut(s) 709, 729
BstUI CGCG 1 cut(s) 335
BsuRI GGCC 1 cut(s) 52
BtgI CCRYGG 1 cut(s) 333
BtgZI GCGATG 1 cut(s) 797
BtsCI GGATG 3 cut(s) 350, 477, 564
BtsIMutI CAGTG 1 cut(s) 707
BveI ACCTGC 1 cut(s) 787
Cac8I GCNNGC 3 cut(s) 87, 91, 801
CfoI GCGC 2 cut(s) 85, 454
Cfr13I GGNCC 2 cut(s) 270, 342
Cfr42I CCGCGG 1 cut(s) 336
Csp6I GTAC 4 cut(s) 36, 57, 173, 795
CviAII CATG 1 cut(s) 241
CviJI RGCY 4 cut(s) 52, 183, 196, 563
CviKI_1 RGCY 4 cut(s) 52, 183, 196, 563
CviQI GTAC 4 cut(s) 36, 57, 173, 795
DdeI CTNAG 1 cut(s) 483
DpnI GATC 2 cut(s) 413, 735
DpnII GATC 2 cut(s) 411, 733
EaeI YGGCCR 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco32I GATATC 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 270, 342
Eco47III AGCGCT 1 cut(s) 453
Eco57I CTGAAG 4 cut(s) 153, 230, 354, 746
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 342
EcoRI GAATTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 52
EcoRV GATATC 1 cut(s) 297
Esp3I CGTCTC 1 cut(s) 549
FaeI CATG 1 cut(s) 244
FatI CATG 1 cut(s) 240
FokI GGATG 3 cut(s) 337, 464, 551
FspBI CTAG 2 cut(s) 6, 380
GlaI GCGC 2 cut(s) 84, 453
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 1 cut(s) 52
HhaI GCGC 2 cut(s) 85, 454
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 2 cut(s) 83, 452
HinP1I GCGC 2 cut(s) 83, 452
HinfI GANTC 5 cut(s) 205, 474, 487, 529, 625
HphI GGTGA 2 cut(s) 167, 538
Hpy166II GTNNAC 2 cut(s) 377, 727
Hpy188I TCNGA 7 cut(s) 114, 355, 420, 473, 486, 630, 733
Hpy188III TCNNGA 4 cut(s) 6, 145, 303, 533
Hpy8I GTNNAC 2 cut(s) 377, 727
HpyAV CCTTC 3 cut(s) 143, 300, 447
HpyCH4III ACNGT 4 cut(s) 61, 72, 161, 445
HpyCH4IV ACGT 2 cut(s) 105, 388
HpyCH4V TGCA 1 cut(s) 727
HpyF3I CTNAG 1 cut(s) 483
HpySE526I ACGT 2 cut(s) 105, 388
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 2 cut(s) 83, 452
KspI CCGCGG 1 cut(s) 336
Kzo9I GATC 2 cut(s) 411, 733
LmnI GCTCC 3 cut(s) 449, 520, 560
LweI GCATC 2 cut(s) 657, 696
MaeI CTAG 2 cut(s) 6, 380
MaeII ACGT 2 cut(s) 105, 388
MaeIII GTNAC 1 cut(s) 155
MalI GATC 2 cut(s) 413, 735
MboI GATC 2 cut(s) 411, 733
MboII GAAGA 3 cut(s) 159, 291, 746
MhlI GDGCHC 3 cut(s) 517, 709, 729
MluCI AATT 5 cut(s) 18, 148, 231, 494, 713
MlyI GAGTC 1 cut(s) 483
MmeI TCCRAC 2 cut(s) 378, 427
MnlI CCTC 8 cut(s) 152, 333, 355, 492, 528, 584, 608, 687
MseI TTAA 3 cut(s) 66, 603, 699
MspA1I CMGCKG 2 cut(s) 196, 335
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
MvnI CGCG 1 cut(s) 335
NdeII GATC 2 cut(s) 411, 733
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 1 cut(s) 562
NmuCI GTSAC 1 cut(s) 155
NspV TTCGAA 1 cut(s) 490
PaqCI CACCTGC 1 cut(s) 787
PfeI GAWTC 4 cut(s) 205, 487, 529, 625
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
PpuMI RGGWCCY 1 cut(s) 342
PsiI TTATAA 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 562
PspPI GGNCC 2 cut(s) 270, 342
PspPPI RGGWCCY 1 cut(s) 342
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 4 cut(s) 37, 58, 174, 796
RsaNI GTAC 4 cut(s) 36, 57, 173, 795
SacII CCGCGG 1 cut(s) 336
SaqAI TTAA 3 cut(s) 66, 603, 699
Sau3AI GATC 2 cut(s) 411, 733
Sau96I GGNCC 2 cut(s) 270, 342
SchI GAGTC 1 cut(s) 483
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 3 cut(s) 517, 709, 729
SfaNI GCATC 2 cut(s) 657, 696
Sfr303I CCGCGG 1 cut(s) 336
SfuI TTCGAA 1 cut(s) 490
SgrBI CCGCGG 1 cut(s) 336
SinI GGWCC 2 cut(s) 270, 342
Sse9I AATT 5 cut(s) 18, 148, 231, 494, 713
SsiI CCGC 3 cut(s) 292, 333, 335
SspI AATATT 2 cut(s) 286, 429
SspMI CTAG 2 cut(s) 6, 380
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 4 cut(s) 61, 72, 161, 445
TaiI ACGT 2 cut(s) 108, 391
TaqI TCGA 2 cut(s) 490, 613
TasI AATT 5 cut(s) 18, 148, 231, 494, 713
TatI WGTACW 2 cut(s) 35, 172
TfiI GAWTC 4 cut(s) 205, 487, 529, 625
Tru1I TTAA 3 cut(s) 66, 603, 699
Tru9I TTAA 3 cut(s) 66, 603, 699
TscAI CASTG 1 cut(s) 714
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 800
TspGWI ACGGA 1 cut(s) 573
TspRI CASTG 1 cut(s) 714
VneI GTGCAC 1 cut(s) 725
VpaK11BI GGWCC 2 cut(s) 270, 342
XagI CCTNNNNNAGG 1 cut(s) 681
XapI RAATTY 2 cut(s) 148, 713
XbaI TCTAGA 1 cut(s) 5
XspI CTAG 2 cut(s) 6, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.