RLG00000002510

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000423
Physical Location & Seq
Reverse (-)
35464098 .. 35476493
12396 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002510

Sequence Viewer

Length: 1224 bp
ATGGAGCTTTGGACGCTCTTCGTCACCGCATCAGTTCCGGTCTTGGAATCGTTCTTGATTACTGCGCTTGGCTCATATCTTGCACTTGATCGCGTGAACCTTTTGGGGCCAGATAGCAGGAAGCACTTGAACACTATTGTATTCTATGTGAACACTCCAGCCCTGATTGCTGCCAACCTTGCAGAGACAATAACTTATGACAGCCTGGTTAAACTGTGGTTCATGCCGGTGAATATTCTTCTTACATTCATTGTTGGTTCAATATTTGGATGGATACTCATGAAATTAACAAGAACTCCTCCACATTTGCGAGGTCTCGTCTTGGGTTGTTGCGCTGCGGGAAATTTGGGAAACCTTCTCCTCATTATTATTCCAGCAGTTTGTGAAGAATCAGGGAGTCCATTTGGAGATGCTGATACCTGTGATACTACTGGGACTACTTACGCTTCACTTTCAATGGCGATTGGAGCTATTTATTTGTGGACCTATGTGTATAACATTGTCCGGATATCTTCAAAGACGAGCATCCAAGATTCCGATTCCCCGCAGACCACCGACAGCTCGTCAACATCCAGCCACATAAGTTACACCGAGCCTCTGCTTTCTATAGAGGACAACGTGGATCAATGTGAACCTCCCCATAATGTATCTGAAGGAGATGCTAAGATGACATGTCTAGGTAAAACAAAGAAATGGATGGTGATGGTGAATGAAAAGCTCAATTTGAAAACAGTATTTTCCCCCTCAACTATTGCAGTGATTATTGGGTTTGCAGTTGGAATCATCTCTCCAATTCGAAACTTATTGATTGGAGACGACGCACCTCTAGCGGTGATCGACGACACTACTTCGTTGTTAGGAGATGCTGCTATCCCGCTTCTTACTTTGATAATAGGAGGTAACCTTGTTAAAGGTTTGAGAGTGGGAGGGATACAAAAATCTATCCTTATTGGCATCATAATTGTTAAATATGTCGCGGCGCCTCTTACAGGAATATTGATTGTTAAAGGGGCAGTAAAATTTGGCTTTGTAAGCAATGATCCATTGTATCTGTTTGTTCTTCTGCTTCAGTTTGCTGTCCCTCCTGCAATGAACTTGGGAACCATCACTCAACTGTTCGGACAAGGAGAGAGTGAGTGTTCAGTTATCATGCTCTGGACTTACATTTTTGCTTCCCTATCGCTTACGTTTTGGTGTGCCTTCTTCTTGTGGCTTGTGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

408

Amino Acids

43.94

Weight (kDa)

5.01

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 398 2.6e-80 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 979
AccII CGCG 2 cut(s) 93, 977
AccIII TCCGGA 1 cut(s) 504
AciI CCGC 6 cut(s) 27, 338, 545, 830, 875, 977
AclWI GGATC 2 cut(s) 630, 1034
AcsI RAATTY 2 cut(s) 343, 1019
AcuI CTGAAG 2 cut(s) 672, 1052
AcyI GRCGYC 1 cut(s) 980
AfiI CCNNNNNNNGG 1 cut(s) 989
AflIII ACRYGT 1 cut(s) 671
AgsI TTSAA 5 cut(s) 130, 261, 456, 516, 727
AhdI GACNNNNNGTC 1 cut(s) 562
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 4 cut(s) 7, 470, 561, 718
AluI AGCT 4 cut(s) 7, 470, 561, 718
Alw26I GTCTC 3 cut(s) 179, 320, 807
AlwI GGATC 2 cut(s) 630, 1034
Aor13HI TCCGGA 1 cut(s) 504
AoxI GGCC 2 cut(s) 107, 1218
ApeKI GCWGC 3 cut(s) 170, 335, 866
ApoI RAATTY 2 cut(s) 343, 1019
AspLEI GCGC 3 cut(s) 67, 335, 982
AspS9I GGNCC 2 cut(s) 107, 483
AsuHPI GGTGA 5 cut(s) 16, 241, 712, 718, 844
AsuII TTCGAA 1 cut(s) 796
AvaII GGWCC 1 cut(s) 483
BanI GGYRCC 1 cut(s) 979
BbvI GCAGC 3 cut(s) 157, 322, 853
BccI CCATC 4 cut(s) 264, 691, 697, 1112
BciT130I CCWGG 1 cut(s) 206
BciVI GTATCC 2 cut(s) 267, 924
BcoDI GTCTC 3 cut(s) 179, 320, 807
BfaI CTAG 2 cut(s) 677, 827
BfmI CTRYAG 1 cut(s) 606
BfoI RGCGCY 1 cut(s) 983
BfuI GTATCC 2 cut(s) 267, 924
BisI GCNGC 4 cut(s) 171, 336, 867, 978
BlsI GCNGC 4 cut(s) 172, 337, 868, 979
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 483
BmeRI GACNNNNNGTC 1 cut(s) 562
BmgT120I GGNCC 2 cut(s) 107, 483
BmiI GGNNCC 3 cut(s) 108, 981, 1102
BmrFI CCNGG 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 6 cut(s) 38, 400, 534, 649, 853, 963
BmuI ACTGGG 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 141
Bpu14I TTCGAA 1 cut(s) 796
BsaHI GRCGYC 1 cut(s) 980
BsaI GGTCTC 1 cut(s) 320
BsaWI WCCGGW 2 cut(s) 37, 504
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 989
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 2 cut(s) 1042, 1095
BseAI TCCGGA 1 cut(s) 504
BseBI CCWGG 1 cut(s) 206
BseGI GGATG 4 cut(s) 275, 525, 569, 702
BseLI CCNNNNNNNGG 1 cut(s) 989
BseMI GCAATG 2 cut(s) 1042, 1095
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 2 cut(s) 288, 350
BseXI GCAGC 3 cut(s) 157, 322, 853
Bsh1236I CGCG 2 cut(s) 93, 977
BshFI GGCC 2 cut(s) 109, 1220
BshNI GGYRCC 1 cut(s) 979
BsiSI CCGG 3 cut(s) 38, 227, 505
BslFI GGGAC 2 cut(s) 448, 1064
BslI CCNNNNNNNGG 1 cut(s) 989
BsmAI GTCTC 3 cut(s) 179, 320, 807
BsmBI CGTCTC 1 cut(s) 807
BsmFI GGGAC 2 cut(s) 448, 1064
BsnI GGCC 2 cut(s) 109, 1220
Bso31I GGTCTC 1 cut(s) 320
Bsp119I TTCGAA 1 cut(s) 796
Bsp13I TCCGGA 1 cut(s) 504
Bsp143I GATC 4 cut(s) 88, 622, 834, 1039
BspACI CCGC 6 cut(s) 27, 338, 545, 830, 875, 977
BspANI GGCC 2 cut(s) 109, 1220
BspEI TCCGGA 1 cut(s) 504
BspFNI CGCG 2 cut(s) 93, 977
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 3 cut(s) 108, 981, 1102
BspPI GGATC 2 cut(s) 630, 1034
BspQI GCTCTTC 1 cut(s) 23
BspT104I TTCGAA 1 cut(s) 796
BspT107I GGYRCC 1 cut(s) 979
BspTNI GGTCTC 1 cut(s) 320
BsrDI GCAATG 2 cut(s) 1042, 1095
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 226
BssMI GATC 4 cut(s) 88, 622, 834, 1039
BssNI GRCGYC 1 cut(s) 980
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 3 cut(s) 216, 733, 1116
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 980
BstBI TTCGAA 1 cut(s) 796
BstDEI CTNAG 1 cut(s) 663
BstEII GGTNACC 1 cut(s) 899
BstENI CCTNNNNNAGG 1 cut(s) 987
BstF5I GGATG 4 cut(s) 275, 525, 569, 702
BstFNI CGCG 2 cut(s) 93, 977
BstH2I RGCGCY 1 cut(s) 983
BstHHI GCGC 3 cut(s) 67, 335, 982
BstKTI GATC 4 cut(s) 91, 625, 837, 1042
BstMAI GTCTC 3 cut(s) 179, 320, 807
BstMBI GATC 4 cut(s) 88, 622, 834, 1039
BstMWI GCNNNNNNNGC 6 cut(s) 13, 167, 179, 467, 827, 1032
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 675
BstPI GGTNACC 1 cut(s) 899
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 606
BstUI CGCG 2 cut(s) 93, 977
BstV1I GCAGC 3 cut(s) 157, 322, 853
BsuI GTATCC 2 cut(s) 267, 924
BsuRI GGCC 2 cut(s) 109, 1220
BtsCI GGATG 4 cut(s) 275, 525, 569, 702
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 1 cut(s) 762
CciI TCATGA 1 cut(s) 279
CfoI GCGC 3 cut(s) 67, 335, 982
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 107, 483
CseI GACGC 2 cut(s) 22, 827
CviAII CATG 4 cut(s) 223, 280, 672, 1150
DdeI CTNAG 1 cut(s) 663
DinI GGCGCC 1 cut(s) 981
DpnI GATC 4 cut(s) 90, 624, 836, 1041
DpnII GATC 4 cut(s) 88, 622, 834, 1039
DriI GACNNNNNGTC 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 23
Eam1105I GACNNNNNGTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 483
Eco57I CTGAAG 2 cut(s) 672, 1052
Eco91I GGTNACC 1 cut(s) 899
EcoNI CCTNNNNNAGG 1 cut(s) 987
EcoO65I GGTNACC 1 cut(s) 899
EcoRII CCWGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 510
EgeI GGCGCC 1 cut(s) 981
EheI GGCGCC 1 cut(s) 981
Esp3I CGTCTC 1 cut(s) 807
FaeI CATG 4 cut(s) 226, 283, 675, 1153
FaqI GGGAC 2 cut(s) 448, 1064
FatI CATG 4 cut(s) 222, 279, 671, 1149
FauI CCCGC 3 cut(s) 331, 552, 882
Fnu4HI GCNGC 4 cut(s) 171, 336, 867, 978
FokI GGATG 4 cut(s) 282, 512, 556, 709
Fsp4HI GCNGC 4 cut(s) 171, 336, 867, 978
FspBI CTAG 2 cut(s) 677, 827
GlaI GCGC 3 cut(s) 66, 334, 981
GluI GCNGC 4 cut(s) 171, 336, 867, 978
GsuI CTGGAG 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 983
HaeIII GGCC 2 cut(s) 109, 1220
HapII CCGG 3 cut(s) 38, 227, 505
HgaI GACGC 2 cut(s) 22, 827
HhaI GCGC 3 cut(s) 67, 335, 982
Hin1I GRCGYC 1 cut(s) 980
Hin1II CATG 4 cut(s) 226, 283, 675, 1153
Hin6I GCGC 3 cut(s) 65, 333, 980
HinP1I GCGC 3 cut(s) 65, 333, 980
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HinfI GANTC 6 cut(s) 47, 389, 397, 533, 539, 780
HpaII CCGG 3 cut(s) 38, 227, 505
HphI GGTGA 5 cut(s) 16, 241, 712, 718, 844
Hpy166II GTNNAC 5 cut(s) 97, 151, 483, 567, 632
Hpy188I TCNGA 3 cut(s) 538, 652, 1121
Hpy188III TCNNGA 4 cut(s) 55, 280, 505, 1156
Hpy8I GTNNAC 5 cut(s) 97, 151, 483, 567, 632
Hpy99I CGWCG 2 cut(s) 821, 842
HpyAV CCTTC 3 cut(s) 365, 647, 1210
HpyCH4III ACNGT 3 cut(s) 216, 733, 1116
HpyCH4IV ACGT 2 cut(s) 618, 1187
HpyCH4V TGCA 5 cut(s) 83, 182, 755, 773, 1088
HpyF10VI GCNNNNNNNGC 6 cut(s) 13, 167, 179, 467, 827, 1032
HpyF3I CTNAG 1 cut(s) 663
HpySE526I ACGT 2 cut(s) 618, 1187
Hsp92I GRCGYC 1 cut(s) 980
Hsp92II CATG 4 cut(s) 226, 283, 675, 1153
HspAI GCGC 3 cut(s) 65, 333, 980
KasI GGCGCC 1 cut(s) 979
Kpn2I TCCGGA 1 cut(s) 504
Kzo9I GATC 4 cut(s) 88, 622, 834, 1039
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 2 cut(s) 4, 467
Lsp1109I GCAGC 3 cut(s) 157, 322, 853
LweI GCATC 6 cut(s) 38, 400, 534, 649, 853, 963
MaeI CTAG 2 cut(s) 677, 827
MaeII ACGT 2 cut(s) 618, 1187
MaeIII GTNAC 3 cut(s) 22, 584, 899
MalI GATC 4 cut(s) 90, 624, 836, 1041
MboI GATC 4 cut(s) 88, 622, 834, 1039
MboII GAAGA 6 cut(s) 10, 230, 398, 504, 1052, 1195
MluCI AATT 6 cut(s) 284, 343, 721, 792, 960, 1019
Mly113I GGCGCC 1 cut(s) 980
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 757
MroI TCCGGA 1 cut(s) 504
MseI TTAA 5 cut(s) 210, 287, 909, 966, 1005
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 3 cut(s) 38, 227, 505
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 2 cut(s) 93, 977
MwoI GCNNNNNNNGC 6 cut(s) 13, 167, 179, 467, 827, 1032
NarI GGCGCC 1 cut(s) 980
NdeII GATC 4 cut(s) 88, 622, 834, 1039
NlaIII CATG 4 cut(s) 226, 283, 675, 1153
NlaIV GGNNCC 3 cut(s) 108, 981, 1102
NmuCI GTSAC 1 cut(s) 22
NspI RCATGY 1 cut(s) 675
NspV TTCGAA 1 cut(s) 796
PagI TCATGA 1 cut(s) 279
PciI ACATGT 1 cut(s) 671
PciSI GCTCTTC 1 cut(s) 23
PfeI GAWTC 5 cut(s) 47, 389, 533, 539, 780
PkrI GCNGC 4 cut(s) 172, 337, 868, 979
PleI GAGTC 1 cut(s) 405
PluTI GGCGCC 1 cut(s) 983
PpsI GAGTC 1 cut(s) 405
PscI ACATGT 1 cut(s) 671
Psp6I CCWGG 1 cut(s) 204
PspEI GGTNACC 1 cut(s) 899
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 108, 981, 1102
PspPI GGNCC 2 cut(s) 107, 483
RseI CAYNNNNRTG 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 5 cut(s) 210, 287, 909, 966, 1005
SatI GCNGC 4 cut(s) 171, 336, 867, 978
Sau3AI GATC 4 cut(s) 88, 622, 834, 1039
Sau96I GGNCC 2 cut(s) 107, 483
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 206
SfaNI GCATC 6 cut(s) 38, 400, 534, 649, 853, 963
SfcI CTRYAG 1 cut(s) 606
SfoI GGCGCC 1 cut(s) 981
SfuI TTCGAA 1 cut(s) 796
SinI GGWCC 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 6 cut(s) 284, 343, 721, 792, 960, 1019
SsiI CCGC 6 cut(s) 27, 338, 545, 830, 875, 977
SspDI GGCGCC 1 cut(s) 979
SspI AATATT 3 cut(s) 235, 264, 996
SspMI CTAG 2 cut(s) 677, 827
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 216, 733, 1116
TaiI ACGT 2 cut(s) 621, 1190
TaqI TCGA 2 cut(s) 796, 837
TasI AATT 6 cut(s) 284, 343, 721, 792, 960, 1019
TauI GCSGC 1 cut(s) 980
TfiI GAWTC 5 cut(s) 47, 389, 533, 539, 780
Tru1I TTAA 5 cut(s) 210, 287, 909, 966, 1005
Tru9I TTAA 5 cut(s) 210, 287, 909, 966, 1005
TscAI CASTG 1 cut(s) 762
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 3 cut(s) 170, 335, 866
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 5 cut(s) 211, 238, 296, 726, 1106
TspRI CASTG 1 cut(s) 762
VpaK11BI GGWCC 1 cut(s) 483
XagI CCTNNNNNAGG 1 cut(s) 987
XapI RAATTY 2 cut(s) 343, 1019
XceI RCATGY 1 cut(s) 675
XspI CTAG 2 cut(s) 677, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.