Rmu_sc0002460.1_g000002

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002460.1
OG0000423
Physical Location & Seq
Forward (+)
4981 .. 5572
592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002460.1_g000002.1.cds

Sequence Viewer

Length: 372 bp
atgaagatgaagcttttccagctctttatcactgcatcgattccagtcttgaaaaccctattgattactgcccttggctcatatcttgcaactgaacgcgtcaatattctgggggaagacagtaggaagcacttaaacagtgttgtatttttcgtgttcaatccagccctggttggttccagccttgcccagaccataacatatcacagtatgattaagctgtggttcatgcctgtgaacgtcctcatgacctttattgttggttcaatatttggatggatactcatcctattaacaagaactcctccacgtcttagaggtcttactgtgggctgctgtgctgctggtaaatttgaatattcaataatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

123

Amino Acids

13.73

Weight (kDa)

9.94

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AcsI RAATTY 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 5 cut(s) 52, 160, 267, 356, 363
AjiI CACGTC 1 cut(s) 311
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 3 cut(s) 13, 22, 220
AluI AGCT 3 cut(s) 13, 22, 220
ApeKI GCWGC 2 cut(s) 333, 341
ApoI RAATTY 1 cut(s) 350
Asp700I GAANNNNTTC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 320, 328
BccI CCATC 1 cut(s) 270
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 273
BfuI GTATCC 1 cut(s) 273
BisI GCNGC 2 cut(s) 334, 342
BlsI GCNGC 2 cut(s) 335, 343
Bme1390I CCNGG 1 cut(s) 170
BmgBI CACGTC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 123
Bsa29I ATCGAT 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 73, 168
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bse1I ACTGG 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 73, 168
BseGI GGATG 2 cut(s) 281, 285
BseJI GATNNNNATC 1 cut(s) 284
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 294
BseXI GCAGC 2 cut(s) 320, 328
Bsh1236I CGCG 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 38
BspDI ATCGAT 1 cut(s) 38
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 73, 168
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 4 cut(s) 122, 140, 209, 328
BstDEI CTNAG 1 cut(s) 314
BstF5I GGATG 2 cut(s) 281, 285
BstFNI CGCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 320, 328
BstV2I GAAGAC 1 cut(s) 123
Bsu15I ATCGAT 1 cut(s) 38
BsuI GTATCC 1 cut(s) 273
BsuTUI ATCGAT 1 cut(s) 38
BtrI CACGTC 1 cut(s) 311
BtsCI GGATG 2 cut(s) 281, 285
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 30, 145
CciI TCATGA 1 cut(s) 246
ClaI ATCGAT 1 cut(s) 38
CseI GACGC 1 cut(s) 88
CviAII CATG 2 cut(s) 229, 247
CviJI RGCY 7 cut(s) 13, 22, 78, 167, 183, 220, 333
CviKI_1 RGCY 7 cut(s) 13, 22, 78, 167, 183, 220, 333
DdeI CTNAG 1 cut(s) 314
Eco130I CCWWGG 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 2 cut(s) 232, 250
FaiI YATR 7 cut(s) 82, 197, 202, 212, 230, 248, 370
FatI CATG 2 cut(s) 228, 246
Fnu4HI GCNGC 2 cut(s) 334, 342
FokI GGATG 2 cut(s) 272, 288
Fsp4HI GCNGC 2 cut(s) 334, 342
GluI GCNGC 2 cut(s) 334, 342
HgaI GACGC 1 cut(s) 88
Hin1II CATG 2 cut(s) 232, 250
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 49, 247
Hpy8I GTNNAC 1 cut(s) 238
HpyCH4III ACNGT 4 cut(s) 122, 140, 209, 328
HpyCH4IV ACGT 2 cut(s) 240, 310
HpyCH4V TGCA 2 cut(s) 35, 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 2 cut(s) 240, 310
Hsp92II CATG 2 cut(s) 232, 250
Lsp1109I GCAGC 2 cut(s) 320, 328
LweI GCATC 1 cut(s) 44
MaeII ACGT 2 cut(s) 240, 310
MboII GAAGA 2 cut(s) 16, 128
MluCI AATT 1 cut(s) 350
MluI ACGCGT 1 cut(s) 97
MnlI CCTC 3 cut(s) 254, 311, 315
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 3 cut(s) 134, 216, 293
MslI CAYNNNNRTG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 19
NlaIII CATG 2 cut(s) 232, 250
NlaIV GGNNCC 1 cut(s) 178
PagI TCATGA 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 335, 343
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 3 cut(s) 134, 216, 293
SatI GCNGC 2 cut(s) 334, 342
ScrFI CCNGG 1 cut(s) 170
SetI ASST 7 cut(s) 15, 24, 222, 243, 254, 313, 322
SfaNI GCATC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 1 cut(s) 350
SspI AATATT 3 cut(s) 106, 270, 359
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 4 cut(s) 122, 140, 209, 328
TaiI ACGT 2 cut(s) 243, 313
TaqI TCGA 1 cut(s) 38
TasI AATT 1 cut(s) 350
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 3 cut(s) 134, 216, 293
Tru9I TTAA 3 cut(s) 134, 216, 293
TscAI CASTG 2 cut(s) 37, 145
TseI GCWGC 2 cut(s) 333, 341
TspDTI ATGAA 3 cut(s) 17, 23, 217
TspRI CASTG 2 cut(s) 37, 145
XapI RAATTY 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.