Prupe.5G004300_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000423
Physical Location & Seq
Forward (+)
549450 .. 554169
4720 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G004300.1

Sequence Viewer

Length: 1251 bp
ATGGAGCTTTTGCAGCTCTTCATCACCGCCTTAATCCCAGCACTGAAAATTCTCTTCACCACTTTGCTTGGCTCATATCTTGCGCTTGATCGCGTCAATATTTTGGGGGAAGACGCTAGGAAGCACTTAAACACGGTTGTATTTTACGTATTCAGTCCTGCCCTGGTGAGCAGCAACCTTGCGCGGACAATAACAGATAAAAGCATAGTTCAATTGTGGTTCATGCCGGTGAATATCCTCATCACATTTATTGTTGGTTCGATCCTAGGATGGATACTCCTCCAGTTAACAAGACCTCCTGCATATCTGCGAGGCATTGTCGTAGGTTGCTGTGCTGGAGGAAATTTGGGATTCATGCTCCTTATTATAGTCCCAGCAGTTTGTAAAGAAAAAGGGAGTCCATTTGGAGCTCCTGATGTCTGTCATACTTATGCATTGGCTTATGCTTCACTTTCAATGGCGATAGGAGCCATGTATTTGTGGTCCTATGTGTATAATATTGTGAGGATATCTGCAAAGAAGGGCACCCAAAATGCCCACCAATCTCCAGAGAGATCCTCCACACCAAACCAAGTAAGTTGCACTGAGCCTCCGCTTTCTTCAAAGGAATCTGAGGTAGTGGACGACAATGCTGCGGATCAATATGCACTGCCCTGCACTGCTATACCTGAAGAAAATGCTAAGATGACAAGTTTAGGTAAAGTAATAAAGCAACGTATTATGACGGTGTTTGGAAAGCTCAATCTGAAAACAATATTTTCCCCTTCTACTACTGGAGCAATGGTTGGTTTTGTGATTGGACTCATACCTCAGATTCGAAAACTATTGATAGGAGATGGCGCTCCTCTGCGGGTGATTCAAGACACTGCTTCTTTCTTGGGAGACGCAGCCATCCCAAGTCTTACTTTGATAATAGGAGGAAACCTACTTACAGGTTCGAGAGGGCCAGGGATACAGAAATCTCTGATTGTTGGCATTATCGTTGTTCGTTATGTTGTCCTGCCTCTTGCAGGCATATTGGTTGTTAAAGGTGCATTAAAATTTGGGTTGGTGCATTATGATCCATTGTATCTGTTTGTTCTTCTGCTTCAGTTTTCACTCCCACCAGCAATGAACATAGGAATAATGGCTCAATTGTTCGGAGCAGGAGAAAAGGAATGTTCAGTTATCATGCTGTGGGCTTATCTTTTTGCTTCAGTAACGCTTACTTTTTGGTCCGCCTTCTTCATGTGGCTTGTGGCCCGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

417

Amino Acids

45.09

Weight (kDa)

9.15

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 524
AccII CGCG 2 cut(s) 93, 184
AciI CCGC 6 cut(s) 27, 184, 593, 635, 850, 1218
AclWI GGATC 4 cut(s) 256, 549, 645, 1055
AcsI RAATTY 3 cut(s) 48, 343, 1040
AcuI CTGAAG 3 cut(s) 690, 1073, 1179
AfiI CCNNNNNNNGG 1 cut(s) 1010
AgsI TTSAA 4 cut(s) 212, 456, 603, 860
AjnI CCWGG 2 cut(s) 162, 946
AluBI AGCT 4 cut(s) 7, 16, 410, 739
AluI AGCT 4 cut(s) 7, 16, 410, 739
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 1 cut(s) 876
AlwI GGATC 4 cut(s) 256, 549, 645, 1055
AoxI GGCC 2 cut(s) 944, 1239
ApeKI GCWGC 4 cut(s) 13, 171, 632, 887
ApoI RAATTY 3 cut(s) 48, 343, 1040
AspA2I CCTAGG 1 cut(s) 265
AspLEI GCGC 3 cut(s) 85, 184, 842
AspS9I GGNCC 4 cut(s) 483, 944, 1215, 1240
AsuHPI GGTGA 5 cut(s) 16, 49, 178, 241, 865
AsuII TTCGAA 1 cut(s) 817
AvaII GGWCC 2 cut(s) 483, 1215
AvrII CCTAGG 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 527
BanI GGYRCC 1 cut(s) 524
BanII GRGCYC 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 4 cut(s) 25, 183, 619, 899
BccI CCATC 3 cut(s) 264, 830, 899
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 2 cut(s) 164, 948
BciVI GTATCC 2 cut(s) 267, 945
BcoDI GTCTC 1 cut(s) 876
BfaI CTAG 2 cut(s) 117, 266
BfoI RGCGCY 1 cut(s) 843
BfuI GTATCC 2 cut(s) 267, 945
BisI GCNGC 4 cut(s) 14, 172, 633, 888
BlnI CCTAGG 1 cut(s) 265
BlsI GCNGC 4 cut(s) 15, 173, 634, 889
Bme1390I CCNGG 2 cut(s) 164, 948
Bme18I GGWCC 2 cut(s) 483, 1215
BmgT120I GGNCC 4 cut(s) 483, 944, 1215, 1240
BmiI GGNNCC 2 cut(s) 469, 526
BmrFI CCNGG 2 cut(s) 164, 948
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 542, 574
BpmI CTGGAG 4 cut(s) 266, 357, 531, 795
Bpu14I TTCGAA 1 cut(s) 817
BsaAI YACGTR 1 cut(s) 148
BsaJI CCNNGG 3 cut(s) 162, 265, 947
BsaXI ACNNNNNCTCC 6 cut(s) 280, 310, 574, 604, 768, 798
Bsc4I CCNNNNNNNGG 1 cut(s) 1010
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 2 cut(s) 283, 778
Bse3DI GCAATG 2 cut(s) 786, 1116
BseBI CCWGG 2 cut(s) 164, 948
BseDI CCNNGG 3 cut(s) 162, 265, 947
BseGI GGATG 2 cut(s) 275, 891
BseLI CCNNNNNNNGG 1 cut(s) 1010
BseMI GCAATG 2 cut(s) 786, 1116
BseMII CTCAG 3 cut(s) 576, 603, 824
BseNI ACTGG 2 cut(s) 283, 778
BseRI GAGGAG 2 cut(s) 269, 834
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 4 cut(s) 25, 183, 619, 899
BseYI CCCAGC 2 cut(s) 37, 373
BsgI GTGCAG 1 cut(s) 640
Bsh1236I CGCG 2 cut(s) 93, 184
BshFI GGCC 2 cut(s) 946, 1241
BshNI GGYRCC 1 cut(s) 524
BsiHKAI GWGCWC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 1010
BsmAI GTCTC 1 cut(s) 876
BsmBI CGTCTC 1 cut(s) 876
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 2 cut(s) 946, 1241
Bsp119I TTCGAA 1 cut(s) 817
Bsp1286I GDGCHC 2 cut(s) 412, 527
Bsp143I GATC 5 cut(s) 88, 261, 554, 637, 1060
BspACI CCGC 6 cut(s) 27, 184, 593, 635, 850, 1218
BspANI GGCC 2 cut(s) 946, 1241
BspCNI CTCAG 3 cut(s) 577, 604, 823
BspFNI CGCG 2 cut(s) 93, 184
BspLI GGNNCC 2 cut(s) 469, 526
BspPI GGATC 4 cut(s) 256, 549, 645, 1055
BspQI GCTCTTC 1 cut(s) 23
BspT104I TTCGAA 1 cut(s) 817
BspT107I GGYRCC 1 cut(s) 524
BsrDI GCAATG 2 cut(s) 786, 1116
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 2 cut(s) 283, 778
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 162, 265, 947
BssMI GATC 5 cut(s) 88, 261, 554, 637, 1060
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 2 cut(s) 164, 948
Bst4CI ACNGT 2 cut(s) 136, 727
Bst6I CTCTTC 2 cut(s) 23, 59
BstBAI YACGTR 1 cut(s) 148
BstBI TTCGAA 1 cut(s) 817
BstC8I GCNNGC 1 cut(s) 1012
BstDEI CTNAG 4 cut(s) 585, 612, 681, 810
BstENI CCTNNNNNAGG 1 cut(s) 1008
BstF5I GGATG 2 cut(s) 275, 891
BstFNI CGCG 2 cut(s) 93, 184
BstH2I RGCGCY 1 cut(s) 843
BstHHI GCGC 3 cut(s) 85, 184, 842
BstKTI GATC 5 cut(s) 91, 264, 557, 640, 1063
BstMAI GTCTC 1 cut(s) 876
BstMBI GATC 5 cut(s) 88, 261, 554, 637, 1060
BstMWI GCNNNNNNNGC 2 cut(s) 13, 467
BstNI CCWGG 2 cut(s) 164, 948
BstSCI CCNGG 2 cut(s) 162, 946
BstSLI GKGCMC 1 cut(s) 527
BstSNI TACGTA 1 cut(s) 148
BstUI CGCG 2 cut(s) 93, 184
BstV1I GCAGC 4 cut(s) 25, 183, 619, 899
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
BsuI GTATCC 2 cut(s) 267, 945
BsuRI GGCC 2 cut(s) 946, 1241
BtsCI GGATG 2 cut(s) 275, 891
BtsI GCAGTG 3 cut(s) 647, 657, 864
BtsIMutI CAGTG 5 cut(s) 41, 582, 647, 657, 864
Cac8I GCNNGC 1 cut(s) 1012
CfoI GCGC 3 cut(s) 85, 184, 842
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 4 cut(s) 483, 944, 1215, 1240
CseI GACGC 3 cut(s) 82, 122, 893
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 5 cut(s) 223, 355, 472, 1171, 1228
DdeI CTNAG 4 cut(s) 585, 612, 681, 810
DpnI GATC 5 cut(s) 90, 263, 556, 639, 1062
DpnII GATC 5 cut(s) 88, 261, 554, 637, 1060
Eam1104I CTCTTC 2 cut(s) 23, 59
EarI CTCTTC 2 cut(s) 23, 59
EciI GGCGGA 1 cut(s) 1207
Ecl136II GAGCTC 1 cut(s) 410
Eco105I TACGTA 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 412
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 2 cut(s) 483, 1215
Eco53kI GAGCTC 1 cut(s) 410
Eco57I CTGAAG 3 cut(s) 690, 1073, 1179
EcoICRI GAGCTC 1 cut(s) 410
EcoNI CCTNNNNNAGG 1 cut(s) 1008
EcoRII CCWGG 2 cut(s) 162, 946
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 265
Esp3I CGTCTC 1 cut(s) 876
FaeI CATG 5 cut(s) 226, 358, 475, 1174, 1231
FalI AAGNNNNNCTT 2 cut(s) 889, 921
FaqI GGGAC 1 cut(s) 356
FatI CATG 5 cut(s) 222, 354, 471, 1170, 1227
FauI CCCGC 1 cut(s) 843
Fnu4HI GCNGC 4 cut(s) 14, 172, 633, 888
FokI GGATG 2 cut(s) 282, 878
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 4 cut(s) 14, 172, 633, 888
FspBI CTAG 2 cut(s) 117, 266
GlaI GCGC 3 cut(s) 84, 183, 841
GluI GCNGC 4 cut(s) 14, 172, 633, 888
GsaI CCCAGC 2 cut(s) 41, 377
GsuI CTGGAG 4 cut(s) 266, 357, 531, 795
HaeII RGCGCY 1 cut(s) 843
HaeIII GGCC 2 cut(s) 946, 1241
HapII CCGG 1 cut(s) 227
HgaI GACGC 3 cut(s) 82, 122, 893
HhaI GCGC 3 cut(s) 85, 184, 842
Hin1II CATG 5 cut(s) 226, 358, 475, 1174, 1231
Hin6I GCGC 3 cut(s) 83, 182, 840
HinP1I GCGC 3 cut(s) 83, 182, 840
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 6 cut(s) 351, 397, 608, 801, 814, 856
HpaI GTTAAC 1 cut(s) 288
HpaII CCGG 1 cut(s) 227
HphI GGTGA 5 cut(s) 16, 49, 178, 241, 865
Hpy166II GTNNAC 2 cut(s) 288, 622
Hpy188I TCNGA 5 cut(s) 613, 747, 813, 966, 1142
Hpy188III TCNNGA 4 cut(s) 413, 548, 860, 939
Hpy8I GTNNAC 2 cut(s) 288, 622
HpyAV CCTTC 3 cut(s) 514, 774, 1231
HpyCH4III ACNGT 2 cut(s) 136, 727
HpyCH4IV ACGT 2 cut(s) 147, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 467
HpyF3I CTNAG 4 cut(s) 585, 612, 681, 810
HpySE526I ACGT 2 cut(s) 147, 715
Hsp92II CATG 5 cut(s) 226, 358, 475, 1174, 1231
HspAI GCGC 3 cut(s) 83, 182, 840
KspAI GTTAAC 1 cut(s) 288
Kzo9I GATC 5 cut(s) 88, 261, 554, 637, 1060
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 8 cut(s) 4, 363, 407, 415, 467, 776, 847, 1142
Lsp1109I GCAGC 4 cut(s) 25, 183, 619, 899
MaeI CTAG 2 cut(s) 117, 266
MaeII ACGT 2 cut(s) 147, 715
MaeIII GTNAC 1 cut(s) 1198
MalI GATC 5 cut(s) 90, 263, 556, 639, 1062
MboI GATC 5 cut(s) 88, 261, 554, 637, 1060
MboII GAAGA 7 cut(s) 10, 46, 122, 591, 683, 1073, 1216
MfeI CAATTG 2 cut(s) 212, 1133
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 2 cut(s) 412, 527
MluCI AATT 5 cut(s) 48, 212, 343, 1040, 1133
MlyI GAGTC 2 cut(s) 406, 795
Mph1103I ATGCAT 1 cut(s) 436
MseI TTAA 5 cut(s) 32, 128, 287, 1026, 1037
MslI CAYNNNNRTG 2 cut(s) 227, 429
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 164, 948
MunI CAATTG 2 cut(s) 212, 1133
MvaI CCWGG 2 cut(s) 164, 948
MvnI CGCG 2 cut(s) 93, 184
MwoI GCNNNNNNNGC 2 cut(s) 13, 467
NdeII GATC 5 cut(s) 88, 261, 554, 637, 1060
NlaIII CATG 5 cut(s) 226, 358, 475, 1174, 1231
NlaIV GGNNCC 2 cut(s) 469, 526
NsiI ATGCAT 1 cut(s) 436
NspV TTCGAA 1 cut(s) 817
PciSI GCTCTTC 1 cut(s) 23
PfeI GAWTC 4 cut(s) 351, 608, 814, 856
PkrI GCNGC 4 cut(s) 15, 173, 634, 889
PleI GAGTC 2 cut(s) 405, 795
PpsI GAGTC 2 cut(s) 405, 795
Ppu21I YACGTR 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 412
Psp6I CCWGG 2 cut(s) 162, 946
PspFI CCCAGC 2 cut(s) 37, 373
PspGI CCWGG 2 cut(s) 162, 946
PspN4I GGNNCC 2 cut(s) 469, 526
PspPI GGNCC 4 cut(s) 483, 944, 1215, 1240
PsuI RGATCY 1 cut(s) 554
RseI CAYNNNNRTG 2 cut(s) 227, 429
SacI GAGCTC 1 cut(s) 412
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 5 cut(s) 32, 128, 287, 1026, 1037
SatI GCNGC 4 cut(s) 14, 172, 633, 888
Sau3AI GATC 5 cut(s) 88, 261, 554, 637, 1060
Sau96I GGNCC 4 cut(s) 483, 944, 1215, 1240
SchI GAGTC 2 cut(s) 406, 795
ScrFI CCNGG 2 cut(s) 164, 948
SduI GDGCHC 2 cut(s) 412, 527
SfuI TTCGAA 1 cut(s) 817
SinI GGWCC 2 cut(s) 483, 1215
SmiMI CAYNNNNRTG 2 cut(s) 227, 429
SnaBI TACGTA 1 cut(s) 148
Sse9I AATT 5 cut(s) 48, 212, 343, 1040, 1133
SsiI CCGC 6 cut(s) 27, 184, 593, 635, 850, 1218
SspI AATATT 3 cut(s) 100, 499, 756
SspMI CTAG 2 cut(s) 117, 266
SstI GAGCTC 1 cut(s) 412
StyD4I CCNGG 2 cut(s) 162, 946
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 2 cut(s) 136, 727
TaiI ACGT 2 cut(s) 150, 718
TaqI TCGA 3 cut(s) 260, 817, 938
TasI AATT 5 cut(s) 48, 212, 343, 1040, 1133
TfiI GAWTC 4 cut(s) 351, 608, 814, 856
Tru1I TTAA 5 cut(s) 32, 128, 287, 1026, 1037
Tru9I TTAA 5 cut(s) 32, 128, 287, 1026, 1037
TscAI CASTG 5 cut(s) 48, 589, 654, 664, 871
TseI GCWGC 4 cut(s) 13, 171, 632, 887
TspDTI ATGAA 5 cut(s) 10, 211, 343, 1127, 1216
TspRI CASTG 5 cut(s) 48, 589, 654, 664, 871
VpaK11BI GGWCC 2 cut(s) 483, 1215
XagI CCTNNNNNAGG 1 cut(s) 1008
XapI RAATTY 3 cut(s) 48, 343, 1040
XmaJI CCTAGG 1 cut(s) 265
XspI CTAG 2 cut(s) 117, 266
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.