Rorug07G0166700

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000423
Physical Location & Seq
Reverse (-)
13354060 .. 13355681
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0166700.1

Sequence Viewer

Length: 534 bp
ATGTCCGCTCTCGAAGCCCGAATCTCCCTCGTCGCCGCTCTCGCCACCCAAGCCTCCTCCTTTTACTCGATTTGGCCACCAAGACAGCCAAGTACATCTTCTCCAAGCAGTTCGAGGCTCGAACTCTCGAGGAAGCTCTCATGCCAGATGCTGGAGTGGAGGCCAAAGATTGCTTCCAGATTTATCTGGATTACCATATGGGTTAGCAGTATATCGTTTGATACATATGCTGATATTGCATCTGAGGGCACAGCTGATGTATGTTGTACTGACTGTGTTAAATGTTGTAAGGGAGGCAAAGGGATCACAGATTTGAAATTAGCTCTTGAGTCTAGAGGAGTTCCTTCAAACCTTTTCAACTCAGAGAATTTCTTAGGGAATGGATTGTGGCATCTTGTGAGAGACATAAGAGAATCATGTGCCAAATATGTAGATGAGACTAATGACCTGTTTATCTTAGTAGCTCCTCAGAATGCTGTCGGGAATTGTACTATTGAGGATTTGCAAGCTATGACTGATGCTGCTGGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

177

Amino Acids

19.35

Weight (kDa)

5.04

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 151
AccBSI CCGCTC 2 cut(s) 8, 38
AciI CCGC 2 cut(s) 6, 36
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 1 cut(s) 367
AfaI GTAC 3 cut(s) 94, 268, 490
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 3 cut(s) 316, 348, 358
AjuI GAANNNNNNNTTGG 4 cut(s) 82, 114, 157, 189
AluBI AGCT 5 cut(s) 136, 254, 323, 464, 509
AluI AGCT 5 cut(s) 136, 254, 323, 464, 509
Alw26I GTCTC 2 cut(s) 396, 431
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 127
AoxI GGCC 2 cut(s) 74, 161
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 251
BalI TGGCCA 1 cut(s) 76
BbvI GCAGC 1 cut(s) 508
BcoDI GTCTC 2 cut(s) 396, 431
BfaI CTAG 1 cut(s) 333
BisI GCNGC 2 cut(s) 36, 522
BlsI GCNGC 2 cut(s) 37, 523
BmeT110I CYCGRG 1 cut(s) 127
BmsI GCATC 4 cut(s) 138, 248, 400, 508
BpmI CTGGAG 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 347
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 3 cut(s) 234, 375, 482
BseRI GAGGAG 3 cut(s) 46, 351, 456
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 1 cut(s) 508
BseYI CCCAGC 1 cut(s) 524
BshFI GGCC 2 cut(s) 76, 163
BsiHKCI CYCGRG 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 2 cut(s) 396, 431
BsmI GAATGC 1 cut(s) 478
BsnI GGCC 2 cut(s) 76, 163
BsoBI CYCGRG 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 303
BspACI CCGC 2 cut(s) 6, 36
BspANI GGCC 2 cut(s) 76, 163
BspCNI CTCAG 3 cut(s) 235, 374, 481
BspPI GGATC 1 cut(s) 311
BsrBI CCGCTC 2 cut(s) 8, 38
BssMI GATC 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 507
BstDEI CTNAG 5 cut(s) 243, 361, 373, 457, 468
BstKTI GATC 1 cut(s) 306
BstMAI GTCTC 2 cut(s) 396, 431
BstMBI GATC 1 cut(s) 303
BstMWI GCNNNNNNNGC 4 cut(s) 14, 41, 50, 236
BstSLI GKGCMC 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 508
BsuRI GGCC 2 cut(s) 76, 163
Cac8I GCNNGC 1 cut(s) 507
CaiI CAGNNNCTG 1 cut(s) 151
Csp6I GTAC 3 cut(s) 93, 267, 489
CviAII CATG 2 cut(s) 141, 417
CviQI GTAC 3 cut(s) 93, 267, 489
DdeI CTNAG 5 cut(s) 243, 361, 373, 457, 468
DpnI GATC 1 cut(s) 305
DpnII GATC 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 127
FaeI CATG 2 cut(s) 144, 420
FalI AAGNNNNNCTT 2 cut(s) 82, 114
FatI CATG 2 cut(s) 140, 416
FauNDI CATATG 2 cut(s) 197, 226
Fnu4HI GCNGC 2 cut(s) 36, 522
Fsp4HI GCNGC 2 cut(s) 36, 522
FspBI CTAG 1 cut(s) 333
GluI GCNGC 2 cut(s) 36, 522
GsaI CCCAGC 1 cut(s) 528
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 2 cut(s) 76, 163
Hin1II CATG 2 cut(s) 144, 420
HinfI GANTC 3 cut(s) 21, 329, 413
Hpy188I TCNGA 3 cut(s) 244, 364, 471
Hpy188III TCNNGA 7 cut(s) 11, 127, 177, 187, 326, 333, 481
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 2 cut(s) 239, 505
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 41, 50, 236
HpyF3I CTNAG 5 cut(s) 243, 361, 373, 457, 468
Hsp92II CATG 2 cut(s) 144, 420
Kzo9I GATC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 469
LpnPI CCDG 6 cut(s) 137, 158, 172, 190, 461, 510
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 4 cut(s) 138, 248, 400, 508
MaeI CTAG 1 cut(s) 333
MalI GATC 1 cut(s) 305
MbiI CCGCTC 2 cut(s) 8, 38
MboI GATC 1 cut(s) 303
MboII GAAGA 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 251
MlsI TGGCCA 1 cut(s) 76
MluCI AATT 3 cut(s) 317, 367, 484
MluNI TGGCCA 1 cut(s) 76
MlyI GAGTC 1 cut(s) 338
Mox20I TGGCCA 1 cut(s) 76
MscI TGGCCA 1 cut(s) 76
MseI TTAA 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 76
MspA1I CMGCKG 1 cut(s) 254
Mva1269I GAATGC 1 cut(s) 478
MwoI GCNNNNNNNGC 4 cut(s) 14, 41, 50, 236
NdeI CATATG 2 cut(s) 197, 226
NdeII GATC 1 cut(s) 303
NlaIII CATG 2 cut(s) 144, 420
PaeR7I CTCGAG 1 cut(s) 127
PctI GAATGC 1 cut(s) 478
PfeI GAWTC 2 cut(s) 21, 413
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 2 cut(s) 37, 523
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 524
PstNI CAGNNNCTG 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 3 cut(s) 94, 268, 490
RsaNI GTAC 3 cut(s) 93, 267, 489
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 2 cut(s) 36, 522
Sau3AI GATC 1 cut(s) 303
SchI GAGTC 1 cut(s) 338
SduI GDGCHC 1 cut(s) 251
SetI ASST 7 cut(s) 138, 256, 325, 354, 450, 466, 511
SfaNI GCATC 4 cut(s) 138, 248, 400, 508
Sfr274I CTCGAG 1 cut(s) 127
SlaI CTCGAG 1 cut(s) 127
SmlI CTYRAG 2 cut(s) 127, 326
SmoI CTYRAG 2 cut(s) 127, 326
Sse9I AATT 3 cut(s) 317, 367, 484
SsiI CCGC 2 cut(s) 6, 36
SspMI CTAG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 5 cut(s) 12, 68, 113, 120, 128
TasI AATT 3 cut(s) 317, 367, 484
TatI WGTACW 3 cut(s) 92, 266, 488
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 2 cut(s) 21, 413
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseI GCWGC 1 cut(s) 521
Van91I CCANNNNNTGG 1 cut(s) 151
XapI RAATTY 1 cut(s) 367
XbaI TCTAGA 1 cut(s) 332
XhoI CTCGAG 1 cut(s) 127
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.