Rorug07G0166600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000423
Physical Location & Seq
Reverse (-)
13337696 .. 13343645
5950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0166600.1

Sequence Viewer

Length: 513 bp
ATGGCAACCCAACCTACTGAGACCCCCAAAACAATTTATGACATCACTGTCAAGGATGCTAAGGGGAATGATGTGGATCTTAGTGTGTACAAGGGGAAAGTTCTACTGATTGTCAATGTTGCTTCCAAATGTGGACTGACAAACTCAAACTACGCGGAGCTGAATCAACTATATGAAAAGTATAAAGATCAAGGATTCGAGATACTGGCTTTTCCTTGCAATCAGTTTGGTGCACAGGAACCGGGAAGTAATGAAGAGATTGAAGAGTTTGTCTGCACTCGTTTCAAATCAGAATTTCCGATATTTGACAAGATTGAAGTAAATGGTGATAACTCTGCTCCACTGTACAAGTTCTTGAAGTTAGGCAAATGGGGTTTCTTTAAAGATGATATTCAGTGGAACTTTACCAAGTTTCTAGTTGACAGAGATGGGAAAGTTGCTGATCGCTATTACCCTACAACTGCTGCCCTTAGCCTCGAGCATGGCATAAAGACGCTGTTGGGAGTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

170

Amino Acids

19.22

Weight (kDa)

5.11

Isoelectric Point (pI)

18.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GSHPx PF00255 12 - 120 2.6e-45 Glutathione peroxidase
AhpC-TSA PF00578 12 - 74 6.8e-08 AhpC/TSA family
Redoxin PF08534 14 - 71 1.5e-06 Redoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AccII CGCG 1 cut(s) 155
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 84
AcsI RAATTY 1 cut(s) 293
AfaI GTAC 2 cut(s) 89, 347
AgsI TTSAA 4 cut(s) 263, 286, 317, 358
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 14
Alw44I GTGCAC 1 cut(s) 231
AlwI GGATC 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 476
ApaLI GTGCAC 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 338
AvaI CYCGRG 1 cut(s) 476
BaeGI GKGCMC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 451
BccI CCATC 1 cut(s) 422
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 416
BisI GCNGC 1 cut(s) 465
BlsI GCNGC 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 243
BmeT110I CYCGRG 1 cut(s) 476
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 46
Bpu10I CCTNAGC 2 cut(s) 60, 470
BpuMI CCSGG 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 75
BseGI GGATG 1 cut(s) 61
BseJI GATNNNNATC 1 cut(s) 75
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 210
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 1 cut(s) 451
BsgI GTGCAG 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 14
Bso31I GGTCTC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 476
Bsp1286I GDGCHC 1 cut(s) 235
Bsp1407I TGTACA 2 cut(s) 87, 345
Bsp143I GATC 3 cut(s) 76, 187, 442
BspACI CCGC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 10
BspFNI CGCG 1 cut(s) 155
BspHI TCATGA 1 cut(s) 509
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 14
BsrGI TGTACA 2 cut(s) 87, 345
BsrI ACTGG 1 cut(s) 210
BssMI GATC 3 cut(s) 76, 187, 442
Bst4CI ACNGT 2 cut(s) 49, 345
Bst6I CTCTTC 2 cut(s) 249, 258
BstAUI TGTACA 2 cut(s) 87, 345
BstDEI CTNAG 4 cut(s) 18, 60, 80, 470
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 3 cut(s) 79, 190, 445
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 3 cut(s) 76, 187, 442
BstSCI CCNGG 1 cut(s) 241
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 451
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 3 cut(s) 45, 341, 401
CciI TCATGA 1 cut(s) 509
CseI GACGC 1 cut(s) 502
Csp6I GTAC 2 cut(s) 88, 346
CviAII CATG 2 cut(s) 482, 510
CviJI RGCY 3 cut(s) 160, 209, 474
CviKI_1 RGCY 3 cut(s) 160, 209, 474
CviQI GTAC 2 cut(s) 88, 346
DdeI CTNAG 4 cut(s) 18, 60, 80, 470
DpnI GATC 3 cut(s) 78, 189, 444
DpnII GATC 3 cut(s) 76, 187, 442
DraI TTTAAA 1 cut(s) 382
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
Eam1104I CTCTTC 2 cut(s) 249, 258
EarI CTCTTC 2 cut(s) 249, 258
Eco31I GGTCTC 1 cut(s) 14
Eco88I CYCGRG 1 cut(s) 476
FaeI CATG 2 cut(s) 485, 513
FaiI YATR 7 cut(s) 39, 172, 174, 183, 483, 488, 511
FatI CATG 2 cut(s) 481, 509
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 1 cut(s) 416
GluI GCNGC 1 cut(s) 465
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 502
Hin1II CATG 2 cut(s) 485, 513
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 2 cut(s) 163, 195
HpaII CCGG 1 cut(s) 242
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 4 cut(s) 88, 134, 233, 421
Hpy188I TCNGA 2 cut(s) 292, 300
Hpy188III TCNNGA 3 cut(s) 199, 355, 510
Hpy8I GTNNAC 4 cut(s) 88, 134, 233, 421
HpyCH4III ACNGT 2 cut(s) 49, 345
HpyCH4V TGCA 3 cut(s) 219, 233, 276
HpyF3I CTNAG 4 cut(s) 18, 60, 80, 470
Hsp92II CATG 2 cut(s) 485, 513
Kzo9I GATC 3 cut(s) 76, 187, 442
LmnI GCTCC 2 cut(s) 157, 343
LpnPI CCDG 3 cut(s) 191, 221, 255
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 416
MalI GATC 3 cut(s) 78, 189, 444
MboI GATC 3 cut(s) 76, 187, 442
MboII GAAGA 2 cut(s) 266, 275
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 2 cut(s) 33, 293
MnlI CCTC 1 cut(s) 485
MseI TTAA 1 cut(s) 381
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 243
MvnI CGCG 1 cut(s) 155
NciI CCSGG 1 cut(s) 243
NdeII GATC 3 cut(s) 76, 187, 442
NlaIII CATG 2 cut(s) 485, 513
NlaIV GGNNCC 1 cut(s) 240
PaeR7I CTCGAG 1 cut(s) 476
PagI TCATGA 1 cut(s) 509
PfeI GAWTC 2 cut(s) 163, 195
PkrI GCNGC 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 240
PspXI VCTCGAGB 1 cut(s) 476
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 2 cut(s) 89, 347
RsaNI GTAC 2 cut(s) 88, 346
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 3 cut(s) 76, 187, 442
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 235
SetI ASST 2 cut(s) 16, 162
SfaNI GCATC 1 cut(s) 46
Sfr274I CTCGAG 1 cut(s) 476
SlaI CTCGAG 1 cut(s) 476
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 2 cut(s) 33, 293
SsiI CCGC 1 cut(s) 155
SspMI CTAG 1 cut(s) 416
StyD4I CCNGG 1 cut(s) 241
TaaI ACNGT 2 cut(s) 49, 345
TaqI TCGA 2 cut(s) 198, 477
TasI AATT 2 cut(s) 33, 293
TatI WGTACW 2 cut(s) 87, 345
TfiI GAWTC 2 cut(s) 163, 195
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 3 cut(s) 52, 348, 401
TseI GCWGC 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 189, 267
TspRI CASTG 3 cut(s) 52, 348, 401
VneI GTGCAC 1 cut(s) 231
XapI RAATTY 1 cut(s) 293
XhoI CTCGAG 1 cut(s) 476
XspI CTAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.