Rorug07G0165800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000423
Physical Location & Seq
Forward (+)
13279253 .. 13293638
14386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0165800.1

Sequence Viewer

Length: 5547 bp
ATGGGTAAAGGAAGACCTAGGGCTGTGGAGAAGGGGGTGGTGGGGCCCAATTTGAGTGCTTCATCGTCTGGGTCGTCGTTGACCATACCATCTGCACCTGTGTATTACCCTAGTGAGGATGAGTTTAGGGATCCTTTGGAGTATATATGTAAGATCAGGGCTGAGGCTGAGTCCTACGGGATTTGTAGGATAGTTCCGCCGAGTAGCTGGAAGCCCCCATTTGCTTTGGACTTGGATTCGTTTACATTTCCGACGAAGACGCAGGCCATTCACCAGTTGCAGGTGAGGCCTGCGTCGTGTGATTCAAAGACTTTTGAGTTGGAGTACAATAGGTTTTTGGAGGATCATTGTGGGAAGAGGTTGAGGAGGAAGGTGGTTTTTGAAGGGGAGGAGTTGGATTTGTGTAAGCTGTTTAATGCTGCCAAGAGGTATGGGGGGTATGATAAGGTTGTCAAGGAGAAGAAGTGGGGGGAGGTCGTGAGGTTTGTGAGGCCGGTGAGGAAGGTGTCTGAGTGTTCGAAGCATGTGTTGCATCAGTTGTATCTGGAGCATTTGTTCGAGTATGAGGAGTATTATAATAAGCTGAATAAAGAGGGGGGTAGGGGTTGTAAGAGGGGTTTGCAGGAGGAGAAGAAGGGTGAACATAATGCTGAATGTTCTAGCTCCAAAAGGAGGCGAACAAATAATAACGATGGTGAGAGGGCTAGGGTTCGAAAGGTAAAGAAGGAAGAGGAGGAACATGATCAGATATGTGAGCAATGCAGAAGTGGGTTGCATGGGGAAGTGATGCTTTTGTGTGATAGGTGTGATAAGGGGTGGCACATATACTGTCTCTCCCCGCCTTTGAAACAGATCCCGTCAGGGAATTGGTACTGCCTAGATTGCTTGAATTCCGATGAAGATTGTTTTGGTTTTGTGCCCGGAAAGCGTTTATCACTGGAAGCTTTTAGGCGCGTGGCTGATCGGGCCAAGAAGAAATGGTTTGGGCCAGGACATGCGTCTCGGGTGCAAATAGAGAAAAAGTTCTGGGAAATTGTGGAGGGTTCCATCGGTGAGGTTGAAGTTATGTATGGCAGCGACCTGGATACTTCCATTTATGGGAGCGGTTTTCCGCGTGTAAATGACCAGAGACAAGAGTCAGTTGAGGCCAAGATATGGGATGAATATTGCAGTAGCCCATGGAATCTCAATAACTTGCCCAAGTTGAAAGGATCAGTTCTTAGAGCTGTTCATAATAACATTACTGGTGTTATGGTGCCTTGGCTCTATATTGGGATGCTGTTTTCATCTTTTTGCTGGCATTTTGAAGATCATTGTTTTTATTCAATGAATTATCATCACTGGGGAGAGCCCAAATGCTGGTACAGCGTCCCTGGTAGTGAAGCCAGTGCCTTTGAAAAGGTGATGCGTAACAGTCTTCCTGATCTTTTTGATGCACAACCTGATTTGCTCTTTCAGCTTGTCACCATGTTAAATCCATCTGTTTTGCAAGAGAATGGAGTTCCTGTATACAGCGTCCTACAGGAGCCTGGAAACTTTGTCATCACCTTCCCCAGGTCTTACCATGGAGGTTTTAATCTTGGTTTGAATTGTGCAGAGGCTGTCAATTTTGCCCCTGCTGACTGGTTACCTCATGGTGGGTTTGGAGCAGGGCTCTATCAGCTTTATCATAAAACTGCAGTTCTGTCTCACGAGGAGCTCGTTTGTGTGCTAGCCAAGAGTGACTGTGACAGCAGAGTATCACCTTATTTGAAGAAAGAATTGATAAGAATATGTAACAAGGAGAAAACCTGGAGAGAGCGCCTTTGGAAAAAAGGAATCACCAAATCATCTCTTATGTCTTCTCGGAAGTTCCCTGAATATGTTGGTACTGAGGAGGATCCTACGTGCGTTATATGCCAGCAATATCTTTACCTCTCTGGTGTGGTTTGTCGTTGTCGACCATCCACATTTGTATGTCTGGAGCACTCAGAACGTCTTTGTGAATGCAAATCCAGCAGACTCCGTCTTCATTATCGCCATACACTTGCAGAATTGCACGACTTGGTGCTTGCAATGGATAAACATTGTGGTGAGGAGACAACACAAAGTAGAACAAAAAAAAGACAACTCCAATGCTCCAATGAACCGACTGCTTTAACAAAAAAGGTCAAGGGTGGTCATGTTAATTTTGCCCAACTTGCGGACAAATGGCTTTTGCGCTCATCCAAGATTTTCCATAGTCGGTTTTCCAGAGAAGACTATGTTACTGTATTGAAAGAAGCTGAACAATTTGTTTGGGCTGGTTCAGAGATGAATAATGTTCGGGAAATGGCAAATAATTTGAAAGAAGCTCGGAAATGGGCAGAGGGTGTGAGAAAGTCTGTACCTAAAATTGAAAGTTGGTCATCTCATCGCGACAAAGATATAGAGAAGATTCACTTGGAATATATCAATGAGTTGCTGAGTTTTGATTTGTTGCCCTGTGATGAGCCTGGGCATCTTATTTTGAAGGATTATGCTGAAAAGGCAAGGATACTGATAGAGGAAATCAATACTGCTATGTCTTCATGCCCAAAAATCCCTGAGTTGGAATTGTTGTACAACAGAGTTTGTGAGTTCCCTATTTATGTAAAAGAAAGTGAAAGGTTACAACAGAAAATTTCATCTGCTAAGGTTTGGATAGAAGGCATAACAAAATGCATCTTGGAGAAACAGCCTGCTGCAATTGAGCTTGATGTTCTTTACAAGTTGAAATTGGAGATCCCAGAAGTCGAAGTTCAACTCCCACAGATAGAAATGCTTTCTGATATAGTAGGGAAAGCTGAATCATGTCGAGCTCAATGTGTTGAAATTTTGAAAGGTCCTATTAGCCTCAAGGATATTGAGGTGCTTCTTCTAGAATGGGATGCTTTTACTGTCAAAATACCAGAGTTGAAGCTTTTGAGGCAGTACCACACTGATGCTGTTTCTTGGAATGCTCGCTTTGAAGCTGTTCTTATGAAAGTTCATGAAAGAGAGGATCAACATAATGTAGTTGATGAGTTAGAGCACATTCTAAAGGATGGGGCAACTTTGAAAATCCAAGTTGATCAGATGCCTTTAGTTGAGTTTGAGTTGAAAAAGGCTCGGTGCAGGGAAAAGGCTTTGAGGACACGAGAATCTAAATTGTCTCTGGACTTCATTCAAGAAGTGATGGTGGATGCACAAGGTTTACATATTGAGGGAGAACAAATATATGTTGATATGTCCAAAGTACTTGATGCTGCCATCCAATGGGAGGAAAGAGCAAAATATATTCTTGCACATGGAGCTCAAATTTCTGACTTTGAGGATGTTCTTAGGAGTTCGGAAAACATACATGTGACTTTACCTTCTCTCCTTGATGTCAAGGAGGCACTATCAAAGGCTATGGCCTGGTTGAGTAGATCTGAGCCGTTTCTTGTGCATTGTTCTTCGTTGGAATCTGGCTCAAGTTCTTTGCTGAAAGTTGACACCTTGAAGGAGTTGATTTCTGAGTCAAAGAATCTTAAAGTATCTATGAAAGAAATTAAGATTCTTGAGACTGTTTTGATGAACTGTGAGGAATGGGAGCATGATGCTTGCTCTCTACTGCACGATTCAAGATGCCTATTGGATATGACGACCATTGGTGAGGGGATAAGTGAGGAACTTATTTCCAAGATTGAAAATGTACTTGCAAGAATAGGATCCATGGAAAACACTGGTTTATCTCTTGCTTTTGACTTTGTTGAGCTTGCAAAACTCAAGGATGCTTGTTCTCTGCTGCAATGGTGTAAGAAGGCTATCTCTTTCTGCTCTGCTGCTCCTACTCTCGAGGATGTTGAGAGTTTGATGAGTGATGCGGAGACTTCATGTTGTACAAATGCCTCTGGTGCACTCTGTTACTTGTTGTTTGAAGGAGTCAAATGGCTTAGGCAAGCTACAAAGATTATTTCTGCATCTAGGAATTCTACAAGATGCAAGTTGAGTGAAGCTGAAGAAGTTCTTACTGATTCCCAGAGTATTAGTATCTCCTTCCCTCTGACAGTTACTCAAATTGAAACTGCCATTGAGAAACATAAGTCTTGGCTAGAGCAAGTGCATCAATTTTTCAGCCTAAGGCTGGGGGAACGATCTTGGTCTGTTATATTACAGCTAAAGGAGCTTGGGATTGCTGGTGCTTTCTATTGCCCAGAACTAGATTCAATATTATCTGAAGTTGAAAGGGTTCAGAAGTGGAAGCGACAATGCATGGATATTTTCAGGATTGTGGAGGAGAATTCACTGCTTGGTTCTCTAGAAAAGATACGACAGAATCTGGATAGATCTATGCATATATATGACAAGGCACATGGTTTGAAAGAGGAAGGTTCTTATGCGTGCTGCTCCATTGGTTCTCTGGATCAGGAGTTTCTTACCTGTTCTTTGTGCAAGGAATGCTACCAGTTGCGGTGCTTAGGATCTTTGACAGTAGATGGGAAACAGTCAACATATGTGTGCCTGTGTTGCCAGTATCTAGTATCTGGAACTTTGCAAAATGGAGGAAGTCCTCGGGGATTTGGAGGAGTTCGTCCAGCACTGCAAAAGATTATTGAACTCTTATCTGATGAAGAGGATTTCTGTGTTTGTATGGAAGAAAGAGAGATGTTGAAAGAGGTTTTGAAGCAAGCTCGGGTATGCAAGAGACACTTGGAAGGAATAGTGGATTTTGCATTAGCTTATTCGGACAAAGATCTGAGTGTCCTCTTTGAAAAACTAGCCACTGCTTTAAAGGCCATAGAGTTGGGAGGTTTTTATGACGATGAAGGTTATTGCAACCTTACATTGGCAATATCAAGATACTCGTGGAAAGTCAAAGTTCATAGATTACTCGAGGGTTCACAAAAGCCGACAATCCAACAGATTCAACAGCATTTAAAAGAGAGAGTGGCCGTGAACATTCCACCTGAAGATTACTTTAAGCAAAAACTTACGGAACTGAAGTGCAGTGGCTTGCAGTGGGCAGATAAGGCTAAGAAGGTTGCTGCTGATTCTGGGGCTCTCCCTCTGGAGAAAGTTTTTGAACTTATTTCTGAGGGTGAAAACTTACCTGTTCTTGTAGAGAAGGAACTTAAGCTATTGAAAGATCGGAGTATGCTTTATTGCATATGTAGAAAGCCTTATGATAAGAGAGCAATGATTGCATGTGACAAGTGTGATGAGTGGTATCACTTTGGTTGTGTGAAATTACGTTCCACACCGAAAGTTTACATTTGCCCTGCATGTGAGCCTCTAGCAGAAACATTGTCTTCATCAGCAGTAGTTGATAGTGAGAGATGTGCTGATGCCAAATTTGTAGAACCAAAAACACCCTCTCCTAAGCACACAAAGCCCAGGATGAGCCCAAACAAAGATGAGTTTATTGCAACACAAAAGATGGTTGCAAGAACAGATGACGCCAATGTTTTTAGGTCTTCTAGTGGGATAGACCGTTTATGGTGGCGAAATCGGAAGCCTTTCAGAAGGGCGGCTAAAAAACGAGCTGAGCTTGATAGTCTCTCTCTATTTTCTCATTTGCAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

1848

Amino Acids

210.96

Weight (kDa)

6.45

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjN PF02375 33 - 66 2.9e-16 jmjN domain
ARID PF01388 104 - 189 2.8e-10 ARID/BRIGHT DNA binding domain
PHD PF00628 251 - 295 8.3e-09 PHD-finger
JmjC PF02373 421 - 537 3.7e-43 JmjC domain, hydroxylase
zf-C5HC2 PF02928 630 - 682 9.8e-14 C5HC2 zinc finger
PLU-1 PF08429 730 - 898 3.6e-06 PLU-1-like protein
PLU-1 PF08429 989 - 1194 1.5e-17 PLU-1-like protein
PLU-1 PF08429 1150 - 1415 1e-15 PLU-1-like protein
PHD PF00628 1709 - 1749 5.6e-07 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AarI CACCTGC 1 cut(s) 271
Acc36I ACCTGC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 1255
AccB7I CCANNNNNTGG 3 cut(s) 1155, 1359, 3255
AccBSI CCGCTC 1 cut(s) 1104
AccI GTMKAC 2 cut(s) 1509, 1939
AccII CGCG 3 cut(s) 954, 1114, 2397
AciI CCGC 8 cut(s) 197, 839, 1104, 1112, 2183, 3845, 4432, 5489
AcoI YGGCCR 1 cut(s) 4911
AcsI RAATTY 7 cut(s) 889, 2640, 2832, 3297, 3949, 4261, 5312
AcuI CTGAAG 4 cut(s) 3999, 4218, 4950, 4982
AcyI GRCGYC 1 cut(s) 5418
AflII CTTAAG 1 cut(s) 5093
AflIII ACRYGT 1 cut(s) 3340
AjnI CCWGG 9 cut(s) 988, 1080, 1372, 1528, 1553, 1790, 2473, 3395, 5354
AjuI GAANNNNNNNTTGG 4 cut(s) 891, 923, 2405, 2437
AloI GAACNNNNNNTCC 2 cut(s) 539, 571
Alw21I GWGCWC 6 cut(s) 1701, 1968, 2821, 3033, 3295, 3880
Alw44I GTGCAC 1 cut(s) 3876
AlwNI CAGNNNCTG 2 cut(s) 1601, 4300
Ama87I CYCGRG 5 cut(s) 1002, 3815, 4533, 4653, 4853
ApaI GGGCCC 1 cut(s) 48
ApaLI GTGCAC 1 cut(s) 3876
ApeKI GCWGC 8 cut(s) 419, 1074, 2702, 3245, 3766, 3803, 4365, 5006
ApoI RAATTY 7 cut(s) 889, 2640, 2832, 3297, 3949, 4261, 5312
Asp700I GAANNNNTTC 5 cut(s) 1022, 2973, 3984, 4209, 5477
AspA2I CCTAGG 1 cut(s) 17
AspLEI GCGC 3 cut(s) 954, 1803, 2202
AspS9I GGNCC 5 cut(s) 44, 45, 966, 986, 2843
AsuC2I CCSGG 1 cut(s) 921
AsuII TTCGAA 2 cut(s) 518, 712
AsuNHI GCTAGC 1 cut(s) 1711
AvaI CYCGRG 5 cut(s) 1002, 3815, 4533, 4653, 4853
AvaII GGWCC 1 cut(s) 2843
AvrII CCTAGG 1 cut(s) 17
AxyI CCTNAGG 1 cut(s) 4100
BaeGI GKGCMC 3 cut(s) 48, 921, 3880
BamHI GGATCC 3 cut(s) 130, 1879, 3689
BanI GGYRCC 1 cut(s) 1255
BanII GRGCYC 8 cut(s) 48, 1353, 1656, 1701, 2821, 3295, 5023, 5366
BauI CACGAG 3 cut(s) 1691, 3135, 4825
BbsI GAAGAC 9 cut(s) 19, 263, 1409, 1833, 2000, 2244, 2538, 5262, 5427
Bbv12I GWGCWC 6 cut(s) 1701, 1968, 2821, 3033, 3295, 3880
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 8 cut(s) 406, 1086, 2689, 3232, 3753, 3790, 4352, 4993
BceAI ACGGC 2 cut(s) 3400, 4898
BciT130I CCWGG 9 cut(s) 990, 1082, 1374, 1530, 1555, 1792, 2475, 3397, 5356
BciVI GTATCC 2 cut(s) 1078, 2508
BclI TGATCA 2 cut(s) 742, 3070
BcnI CCSGG 1 cut(s) 921
BfmI CTRYAG 2 cut(s) 1520, 1677
BfoI RGCGCY 1 cut(s) 1804
BfrI CTTAAG 1 cut(s) 5093
BfuAI ACCTGC 1 cut(s) 271
BfuI GTATCC 2 cut(s) 1078, 2508
BglII AGATCT 3 cut(s) 3407, 4307, 4714
BisI GCNGC 9 cut(s) 420, 1075, 2703, 3246, 3767, 3804, 4366, 5007, 5490
BlnI CCTAGG 1 cut(s) 17
BlpI GCTNAGC 1 cut(s) 5505
BlsI GCNGC 9 cut(s) 421, 1076, 2704, 3247, 3768, 3805, 4367, 5008, 5491
BmcAI AGTACT 1 cut(s) 3237
Bme18I GGWCC 1 cut(s) 2843
BmeT110I CYCGRG 5 cut(s) 1002, 3815, 4533, 4653, 4853
BmgT120I GGNCC 5 cut(s) 44, 45, 966, 986, 2843
BmiI GGNNCC 8 cut(s) 45, 46, 132, 1045, 1257, 1527, 1881, 3691
BmrI ACTGGG 1 cut(s) 1351
BmtI GCTAGC 1 cut(s) 1715
BmuI ACTGGG 1 cut(s) 1351
BoxI GACNNNNGTC 2 cut(s) 997, 1135
BpiI GAAGAC 9 cut(s) 19, 263, 1409, 1833, 2000, 2244, 2538, 5262, 5427
BplI GAGNNNNNCTC 2 cut(s) 1638, 1670
BpmI CTGGAG 4 cut(s) 566, 1813, 1982, 5051
Bpu10I CCTNAGC 5 cut(s) 162, 2652, 3914, 4438, 5340
Bpu1102I GCTNAGC 1 cut(s) 5505
Bpu14I TTCGAA 2 cut(s) 518, 712
BpuEI CTTGAG 4 cut(s) 2840, 3436, 3560, 3731
BpuMI CCSGG 1 cut(s) 921
BsaAI YACGTR 1 cut(s) 1887
BsaHI GRCGYC 1 cut(s) 5418
Bse118I RCCGGY 1 cut(s) 493
Bse1I ACTGG 9 cut(s) 274, 942, 1249, 1346, 1386, 1628, 3709, 4426, 4492
Bse21I CCTNAGG 1 cut(s) 4100
Bse3DI GCAATG 4 cut(s) 764, 2061, 3776, 5163
BseBI CCWGG 9 cut(s) 990, 1082, 1374, 1530, 1555, 1792, 2475, 3397, 5356
BseMI GCAATG 4 cut(s) 764, 2061, 3776, 5163
BseNI ACTGG 9 cut(s) 274, 942, 1249, 1346, 1386, 1628, 3709, 4426, 4492
BseSI GKGCMC 3 cut(s) 48, 921, 3880
BseXI GCAGC 8 cut(s) 406, 1086, 2689, 3232, 3753, 3790, 4352, 4993
BseYI CCCAGC 1 cut(s) 4105
BsgI GTGCAG 5 cut(s) 78, 1614, 3133, 3578, 4987
Bsh1236I CGCG 3 cut(s) 954, 1114, 2397
BshNI GGYRCC 1 cut(s) 1255
BsiHKAI GWGCWC 6 cut(s) 1701, 1968, 2821, 3033, 3295, 3880
BsiHKCI CYCGRG 5 cut(s) 1002, 3815, 4533, 4653, 4853
BsiSI CCGG 2 cut(s) 494, 921
BslFI GGGAC 1 cut(s) 1355
BsmBI CGTCTC 1 cut(s) 1005
BsmFI GGGAC 1 cut(s) 1355
BsmI GAATGC 3 cut(s) 1991, 2962, 4424
BsoBI CYCGRG 5 cut(s) 1002, 3815, 4533, 4653, 4853
Bsp119I TTCGAA 2 cut(s) 518, 712
Bsp120I GGGCCC 1 cut(s) 44
Bsp1407I TGTACA 2 cut(s) 2580, 3860
Bsp1720I GCTNAGC 1 cut(s) 5505
Bsp19I CCATGG 3 cut(s) 1178, 1564, 3693
Bsp68I TCGCGA 1 cut(s) 2397
BspACI CCGC 8 cut(s) 197, 839, 1104, 1112, 2183, 3845, 4432, 5489
BspFNI CGCG 3 cut(s) 954, 1114, 2397
BspHI TCATGA 1 cut(s) 2989
BspLI GGNNCC 8 cut(s) 45, 46, 132, 1045, 1257, 1527, 1881, 3691
BspMAI CTGCAG 1 cut(s) 1681
BspMI ACCTGC 1 cut(s) 271
BspOI GCTAGC 1 cut(s) 1715
BspT104I TTCGAA 2 cut(s) 518, 712
BspT107I GGYRCC 1 cut(s) 1255
BspTI CTTAAG 1 cut(s) 5093
BsrBI CCGCTC 1 cut(s) 1104
BsrDI GCAATG 4 cut(s) 764, 2061, 3776, 5163
BsrFI RCCGGY 1 cut(s) 493
BsrGI TGTACA 2 cut(s) 2580, 3860
BsrI ACTGG 9 cut(s) 274, 942, 1249, 1346, 1386, 1628, 3709, 4426, 4492
BssAI RCCGGY 1 cut(s) 493
BssNAI GTATAC 1 cut(s) 1510
BssNI GRCGYC 1 cut(s) 5418
BssSI CACGAG 3 cut(s) 1691, 3135, 4825
BssT1I CCWWGG 5 cut(s) 17, 1178, 1259, 1564, 3693
Bst1107I GTATAC 1 cut(s) 1510
Bst2BI CACGAG 3 cut(s) 1691, 3135, 4825
Bst2UI CCWGG 9 cut(s) 990, 1082, 1374, 1530, 1555, 1792, 2475, 3397, 5356
Bst6I CTCTTC 3 cut(s) 350, 723, 4587
BstACI GRCGYC 1 cut(s) 5418
BstAFI CTTAAG 1 cut(s) 5093
BstAPI GCANNNNNTGC 3 cut(s) 529, 4419, 5162
BstAUI TGTACA 2 cut(s) 2580, 3860
BstBAI YACGTR 1 cut(s) 1887
BstBI TTCGAA 2 cut(s) 518, 712
BstDSI CCRYGG 3 cut(s) 1178, 1564, 3693
BstEII GGTNACC 1 cut(s) 1626
BstENI CCTNNNNNAGG 1 cut(s) 1552
BstFNI CGCG 3 cut(s) 954, 1114, 2397
BstH2I RGCGCY 1 cut(s) 1804
BstHHI GCGC 3 cut(s) 954, 1803, 2202
BstNI CCWGG 9 cut(s) 990, 1082, 1374, 1530, 1555, 1792, 2475, 3397, 5356
BstNSI RCATGY 5 cut(s) 527, 998, 3344, 5169, 5247
BstPAI GACNNNNGTC 2 cut(s) 997, 1135
BstPI GGTNACC 1 cut(s) 1626
BstSFI CTRYAG 2 cut(s) 1520, 1677
BstSLI GKGCMC 3 cut(s) 48, 921, 3880
BstUI CGCG 3 cut(s) 954, 1114, 2397
BstV1I GCAGC 8 cut(s) 406, 1086, 2689, 3232, 3753, 3790, 4352, 4993
BstV2I GAAGAC 9 cut(s) 19, 263, 1409, 1833, 2000, 2244, 2538, 5262, 5427
BstX2I RGATCY 9 cut(s) 130, 852, 1879, 2742, 3407, 3689, 4307, 4442, 4714
BstXI CCANNNNNNTGG 1 cut(s) 4765
BstYI RGATCY 9 cut(s) 130, 852, 1879, 2742, 3407, 3689, 4307, 4442, 4714
BstZ17I GTATAC 1 cut(s) 1510
Bsu36I CCTNAGG 1 cut(s) 4100
BsuI GTATCC 2 cut(s) 1078, 2508
BtgI CCRYGG 3 cut(s) 1178, 1564, 3693
BtgZI GCGATG 1 cut(s) 2378
BtsI GCAGTG 5 cut(s) 4265, 4559, 4743, 4975, 4985
BtuMI TCGCGA 1 cut(s) 2397
BveI ACCTGC 1 cut(s) 271
CaiI CAGNNNCTG 2 cut(s) 1601, 4300
CciI TCATGA 1 cut(s) 2989
CfoI GCGC 3 cut(s) 954, 1803, 2202
Cfr10I RCCGGY 1 cut(s) 493
Cfr13I GGNCC 5 cut(s) 44, 45, 966, 986, 2843
CseI GACGC 6 cut(s) 268, 282, 987, 1357, 1504, 5426
DraI TTTAAA 2 cut(s) 4752, 4899
EaeI YGGCCR 1 cut(s) 4911
Eam1104I CTCTTC 3 cut(s) 350, 723, 4587
EarI CTCTTC 3 cut(s) 350, 723, 4587
EciI GGCGGA 1 cut(s) 186
Ecl136II GAGCTC 3 cut(s) 1699, 2819, 3293
Eco130I CCWWGG 5 cut(s) 17, 1178, 1259, 1564, 3693
Eco147I AGGCCT 1 cut(s) 289
Eco24I GRGCYC 8 cut(s) 48, 1353, 1656, 1701, 2821, 3295, 5023, 5366
Eco47I GGWCC 1 cut(s) 2843
Eco53kI GAGCTC 3 cut(s) 1699, 2819, 3293
Eco57I CTGAAG 4 cut(s) 3999, 4218, 4950, 4982
Eco81I CCTNAGG 1 cut(s) 4100
Eco88I CYCGRG 5 cut(s) 1002, 3815, 4533, 4653, 4853
Eco91I GGTNACC 1 cut(s) 1626
EcoICRI GAGCTC 3 cut(s) 1699, 2819, 3293
EcoNI CCTNNNNNAGG 1 cut(s) 1552
EcoO109I RGGNCCY 2 cut(s) 44, 2843
EcoO65I GGTNACC 1 cut(s) 1626
EcoRI GAATTC 3 cut(s) 889, 3949, 4261
EcoRII CCWGG 9 cut(s) 988, 1080, 1372, 1528, 1553, 1790, 2473, 3395, 5354
EcoT14I CCWWGG 5 cut(s) 17, 1178, 1259, 1564, 3693
EcoT22I ATGCAT 3 cut(s) 2684, 4235, 4317
EcoT38I GRGCYC 8 cut(s) 48, 1353, 1656, 1701, 2821, 3295, 5023, 5366
ErhI CCWWGG 5 cut(s) 17, 1178, 1259, 1564, 3693
Esp3I CGTCTC 1 cut(s) 1005
FaqI GGGAC 1 cut(s) 1355
FauI CCCGC 1 cut(s) 846
FauNDI CATATG 2 cut(s) 4474, 5129
FbaI TGATCA 2 cut(s) 742, 3070
FblI GTMKAC 2 cut(s) 1509, 1939
Fnu4HI GCNGC 9 cut(s) 420, 1075, 2703, 3246, 3767, 3804, 4366, 5007, 5490
FriOI GRGCYC 8 cut(s) 48, 1353, 1656, 1701, 2821, 3295, 5023, 5366
Fsp4HI GCNGC 9 cut(s) 420, 1075, 2703, 3246, 3767, 3804, 4366, 5007, 5490
GlaI GCGC 3 cut(s) 953, 1802, 2201
GluI GCNGC 9 cut(s) 420, 1075, 2703, 3246, 3767, 3804, 4366, 5007, 5490
GsaI CCCAGC 1 cut(s) 4109
GsuI CTGGAG 4 cut(s) 566, 1813, 1982, 5051
HaeII RGCGCY 1 cut(s) 1804
HapII CCGG 2 cut(s) 494, 921
HgaI GACGC 6 cut(s) 268, 282, 987, 1357, 1504, 5426
HhaI GCGC 3 cut(s) 954, 1803, 2202
Hin1I GRCGYC 1 cut(s) 5418
Hin6I GCGC 3 cut(s) 952, 1801, 2200
HinP1I GCGC 3 cut(s) 952, 1801, 2200
HincII GTYRAC 4 cut(s) 81, 1940, 3472, 4470
HindII GTYRAC 4 cut(s) 81, 1940, 3472, 4470
HindIII AAGCTT 2 cut(s) 942, 2918
HpaII CCGG 2 cut(s) 494, 921
Hpy99I CGWCG 3 cut(s) 79, 256, 298
HpyCH4IV ACGT 3 cut(s) 1886, 1975, 5212
HpySE526I ACGT 3 cut(s) 1886, 1975, 5212
Hsp92I GRCGYC 1 cut(s) 5418
HspAI GCGC 3 cut(s) 952, 1801, 2200
Ksp22I TGATCA 2 cut(s) 742, 3070
Lsp1109I GCAGC 8 cut(s) 406, 1086, 2689, 3232, 3753, 3790, 4352, 4993
MaeII ACGT 3 cut(s) 1886, 1975, 5212
MbiI CCGCTC 1 cut(s) 1104
MfeI CAATTG 1 cut(s) 2706
MflI RGATCY 9 cut(s) 130, 852, 1879, 2742, 3407, 3689, 4307, 4442, 4714
MlyI GAGTC 5 cut(s) 179, 1145, 1995, 3506, 3912
MmeI TCCRAC 6 cut(s) 275, 300, 375, 2550, 3420, 4903
Mph1103I ATGCAT 3 cut(s) 2684, 4235, 4317
MroXI GAANNNNTTC 5 cut(s) 1022, 2973, 3984, 4209, 5477
MslI CAYNNNNRTG 6 cut(s) 1954, 2070, 2940, 3341, 4320, 4477
MspCI CTTAAG 1 cut(s) 5093
MspI CCGG 2 cut(s) 494, 921
MunI CAATTG 1 cut(s) 2706
Mva1269I GAATGC 3 cut(s) 1991, 2962, 4424
MvaI CCWGG 9 cut(s) 990, 1082, 1374, 1530, 1555, 1792, 2475, 3397, 5356
MvnI CGCG 3 cut(s) 954, 1114, 2397
NciI CCSGG 1 cut(s) 921
NcoI CCATGG 3 cut(s) 1178, 1564, 3693
NdeI CATATG 2 cut(s) 4474, 5129
NheI GCTAGC 1 cut(s) 1711
NlaIV GGNNCC 8 cut(s) 45, 46, 132, 1045, 1257, 1527, 1881, 3691
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 5 cut(s) 1462, 1721, 1727, 3343, 5168
NruI TCGCGA 1 cut(s) 2397
NsiI ATGCAT 3 cut(s) 2684, 4235, 4317
NspI RCATGY 5 cut(s) 527, 998, 3344, 5169, 5247
NspV TTCGAA 2 cut(s) 518, 712
PaeR7I CTCGAG 2 cut(s) 3815, 4853
PagI TCATGA 1 cut(s) 2989
PaqCI CACCTGC 1 cut(s) 271
PceI AGGCCT 1 cut(s) 289
PciI ACATGT 1 cut(s) 3340
PcsI WCGNNNNNNNCGW 2 cut(s) 71, 1698
PctI GAATGC 3 cut(s) 1991, 2962, 4424
PdmI GAANNNNTTC 5 cut(s) 1022, 2973, 3984, 4209, 5477
PflFI GACNNNGTC 1 cut(s) 2004
PflMI CCANNNNNTGG 3 cut(s) 1155, 1359, 3255
PkrI GCNGC 9 cut(s) 421, 1076, 2704, 3247, 3768, 3805, 4367, 5008, 5491
PleI GAGTC 5 cut(s) 178, 1144, 1995, 3505, 3911
PpsI GAGTC 5 cut(s) 178, 1144, 1995, 3505, 3911
Ppu21I YACGTR 1 cut(s) 1887
PpuMI RGGWCCY 1 cut(s) 2843
PscI ACATGT 1 cut(s) 3340
PshAI GACNNNNGTC 2 cut(s) 997, 1135
PsiI TTATAA 1 cut(s) 576
Psp124BI GAGCTC 3 cut(s) 1701, 2821, 3295
Psp5II RGGWCCY 1 cut(s) 2843
Psp6I CCWGG 9 cut(s) 988, 1080, 1372, 1528, 1553, 1790, 2473, 3395, 5354
PspEI GGTNACC 1 cut(s) 1626
PspFI CCCAGC 1 cut(s) 4105
PspGI CCWGG 9 cut(s) 988, 1080, 1372, 1528, 1553, 1790, 2473, 3395, 5354
PspN4I GGNNCC 8 cut(s) 45, 46, 132, 1045, 1257, 1527, 1881, 3691
PspOMI GGGCCC 1 cut(s) 44
PspPI GGNCC 5 cut(s) 44, 45, 966, 986, 2843
PspPPI RGGWCCY 1 cut(s) 2843
PspXI VCTCGAGB 1 cut(s) 4853
PstI CTGCAG 1 cut(s) 1681
PstNI CAGNNNCTG 2 cut(s) 1601, 4300
PsuI RGATCY 9 cut(s) 130, 852, 1879, 2742, 3407, 3689, 4307, 4442, 4714
PsyI GACNNNGTC 1 cut(s) 2004
RruI TCGCGA 1 cut(s) 2397
RseI CAYNNNNRTG 6 cut(s) 1954, 2070, 2940, 3341, 4320, 4477
SacI GAGCTC 3 cut(s) 1701, 2821, 3295
SalI GTCGAC 1 cut(s) 1938
SatI GCNGC 9 cut(s) 420, 1075, 2703, 3246, 3767, 3804, 4366, 5007, 5490
Sau96I GGNCC 5 cut(s) 44, 45, 966, 986, 2843
ScaI AGTACT 1 cut(s) 3237
SchI GAGTC 5 cut(s) 179, 1145, 1995, 3506, 3912
SfcI CTRYAG 2 cut(s) 1520, 1677
Sfr274I CTCGAG 2 cut(s) 3815, 4853
SfuI TTCGAA 2 cut(s) 518, 712
SinI GGWCC 1 cut(s) 2843
SlaI CTCGAG 2 cut(s) 3815, 4853
SmiMI CAYNNNNRTG 6 cut(s) 1954, 2070, 2940, 3341, 4320, 4477
SmlI CTYRAG 7 cut(s) 2855, 3451, 3539, 3746, 3815, 4853, 5093
SmoI CTYRAG 7 cut(s) 2855, 3451, 3539, 3746, 3815, 4853, 5093
SseBI AGGCCT 1 cut(s) 289
SsiI CCGC 8 cut(s) 197, 839, 1104, 1112, 2183, 3845, 4432, 5489
SspI AATATT 2 cut(s) 1166, 4191
SstI GAGCTC 3 cut(s) 1701, 2821, 3295
StuI AGGCCT 1 cut(s) 289
StyI CCWWGG 5 cut(s) 17, 1178, 1259, 1564, 3693
TaiI ACGT 3 cut(s) 1889, 1978, 5215
TaqI TCGA 8 cut(s) 518, 558, 712, 1939, 2754, 2815, 3816, 4854
TatI WGTACW 5 cut(s) 324, 2580, 3235, 3673, 3860
TauI GCSGC 1 cut(s) 5492
TseFI GTSAC 5 cut(s) 1462, 1721, 1727, 3343, 5168
TseI GCWGC 8 cut(s) 419, 1074, 2702, 3245, 3766, 3803, 4365, 5006
Tsp45I GTSAC 5 cut(s) 1462, 1721, 1727, 3343, 5168
TspGWI ACGGA 2 cut(s) 1994, 4970
Tth111I GACNNNGTC 1 cut(s) 2004
Van91I CCANNNNNTGG 3 cut(s) 1155, 1359, 3255
Vha464I CTTAAG 1 cut(s) 5093
VneI GTGCAC 1 cut(s) 3876
VpaK11BI GGWCC 1 cut(s) 2843
XagI CCTNNNNNAGG 1 cut(s) 1552
XapI RAATTY 7 cut(s) 889, 2640, 2832, 3297, 3949, 4261, 5312
XbaI TCTAGA 2 cut(s) 2878, 4279
XceI RCATGY 5 cut(s) 527, 998, 3344, 5169, 5247
XcmI CCANNNNNNNNNTGG 1 cut(s) 4378
XhoI CTCGAG 2 cut(s) 3815, 4853
XmaJI CCTAGG 1 cut(s) 17
XmiI GTMKAC 2 cut(s) 1509, 1939
XmnI GAANNNNTTC 5 cut(s) 1022, 2973, 3984, 4209, 5477
ZrmI AGTACT 1 cut(s) 3237
Zsp2I ATGCAT 3 cut(s) 2684, 4235, 4317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.