Rw7G025990

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000423
Physical Location & Seq
Forward (+)
32881860 .. 32883413
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G025990.1

Sequence Viewer

Length: 663 bp
ATGGCGCTTTTGCAGCTTTTCATCACAGCCTCAATTCCGGTCTTGAAAGTGCTCTTGATCACTGCACTTGGTTCCTATCTTGCACTTGTGCGCGTTAATATTCTGGGGGAAGAAACCAGGAAGAACATGAACACTGTTGTTTTTTATGTATTCAGTCCAGCTCTGGTTGGAACTAACCTTGCCCAGACTATTACATATGACAGTATGATTAAACTTCACGTTTTTGTTGGTTCTGTACTTGGATGGATACTCATCCAATTAGCAAGACCACCTCCACATCTCCGAGGCCTCATTTTGGGTTGCTGTGCCGCTGGAAATTTGGGGAACTTGCTCCTCATTATAATCCCAGCAGTCTGTAAAGAGAAGGGAAGCCCATTTGGAGCTCCTGATGTCTGTCACACTTATCGAATGGCTTATGCATCACTTTCGCTGGCGATAGGAGCCATTTACCTTTGGTCCTATGTGTATAACGTTGTGAGGATATCTTCAAAGAGGAGTACCCAAGACTCCCCCCAGTATTTGGAGGAACCCACCGAATCAAATCAAGTAAGTTGCACTGAGCCTCTGCTTTCTTCCAAGGAATATGGGATAGTGGAGGACAATACCAAATACCAATCAGTATGCACTGCCCTGCACTATATCTCAACAAGACTAAGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

220

Amino Acids

24.23

Weight (kDa)

8.71

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 191 4.6e-31 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
AccB7I CCANNNNNTGG 1 cut(s) 520
AccII CGCG 1 cut(s) 93
AciI CCGC 1 cut(s) 309
AclI AACGTT 1 cut(s) 471
AcsI RAATTY 1 cut(s) 316
AfaI GTAC 2 cut(s) 237, 499
AfiI CCNNNNNNNGG 2 cut(s) 295, 520
AgsI TTSAA 2 cut(s) 46, 489
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 3 cut(s) 16, 161, 383
AluI AGCT 3 cut(s) 16, 161, 383
Alw21I GWGCWC 2 cut(s) 54, 385
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 316
AspLEI GCGC 2 cut(s) 7, 93
AspS9I GGNCC 1 cut(s) 456
AvaII GGWCC 1 cut(s) 456
BanII GRGCYC 1 cut(s) 385
Bbv12I GWGCWC 2 cut(s) 54, 385
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 237
BcgI CGANNNNNNTGC 2 cut(s) 408, 442
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 240
BclI TGATCA 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 240
BisI GCNGC 2 cut(s) 14, 309
BlsI GCNGC 2 cut(s) 15, 310
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 456
BmgT120I GGNCC 1 cut(s) 456
BmiI GGNNCC 3 cut(s) 73, 442, 528
BmrFI CCNGG 1 cut(s) 118
BmrI ACTGGG 1 cut(s) 508
BmsI GCATC 1 cut(s) 428
BmuI ACTGGG 1 cut(s) 508
BsaBI GATNNNNATC 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 283, 576
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 520
Bse1I ACTGG 1 cut(s) 514
Bse8I GATNNNNATC 1 cut(s) 251
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 283, 576
BseGI GGATG 2 cut(s) 248, 252
BseJI GATNNNNATC 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 295, 520
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 1 cut(s) 514
BseRI GAGGAG 2 cut(s) 323, 508
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 2 cut(s) 48, 617
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 54, 385
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 295, 520
BsnI GGCC 1 cut(s) 288
Bsp1286I GDGCHC 2 cut(s) 54, 385
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 1 cut(s) 309
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 550
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 73, 442, 528
BsrI ACTGG 1 cut(s) 514
BssECI CCNNGG 2 cut(s) 283, 576
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 136, 203
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 558, 653
BstF5I GGATG 2 cut(s) 248, 252
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 93
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 13, 440
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 25
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 1 cut(s) 288
BtsCI GGATG 2 cut(s) 248, 252
BtsI GCAGTG 2 cut(s) 60, 624
BtsIMutI CAGTG 4 cut(s) 60, 132, 555, 624
Cac8I GCNNGC 1 cut(s) 432
CfoI GCGC 2 cut(s) 7, 93
Cfr13I GGNCC 1 cut(s) 456
Csp6I GTAC 2 cut(s) 236, 498
CviAII CATG 1 cut(s) 127
CviJI RGCY 9 cut(s) 16, 29, 161, 288, 372, 383, 413, 443, 562
CviKI_1 RGCY 9 cut(s) 16, 29, 161, 288, 372, 383, 413, 443, 562
CviQI GTAC 2 cut(s) 236, 498
DdeI CTNAG 2 cut(s) 558, 653
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 383
Eco130I CCWWGG 1 cut(s) 576
Eco147I AGGCCT 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 385
Eco32I GATATC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 456
Eco53kI GAGCTC 1 cut(s) 383
EcoICRI GAGCTC 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 116
EcoRV GATATC 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 576
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 1 cut(s) 130
FatI CATG 1 cut(s) 126
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 14, 309
FokI GGATG 2 cut(s) 239, 255
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 14, 309
GlaI GCGC 2 cut(s) 6, 92
GluI GCNGC 2 cut(s) 14, 309
GsaI CCCAGC 1 cut(s) 350
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 288
HapII CCGG 1 cut(s) 38
HhaI GCGC 2 cut(s) 7, 93
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 2 cut(s) 5, 91
HinP1I GCGC 2 cut(s) 5, 91
HinfI GANTC 2 cut(s) 506, 536
HpaII CCGG 1 cut(s) 38
Hpy188I TCNGA 1 cut(s) 284
Hpy188III TCNNGA 3 cut(s) 43, 55, 386
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 2 cut(s) 136, 203
HpyCH4IV ACGT 2 cut(s) 219, 471
HpyCH4V TGCA 7 cut(s) 13, 65, 83, 419, 555, 624, 634
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 440
HpyF3I CTNAG 2 cut(s) 558, 653
HpySE526I ACGT 2 cut(s) 219, 471
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 2 cut(s) 5, 91
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 4 cut(s) 336, 380, 388, 440
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 428
MaeII ACGT 2 cut(s) 219, 471
MaeIII GTNAC 1 cut(s) 395
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 4 cut(s) 122, 133, 477, 564
MhlI GDGCHC 2 cut(s) 54, 385
MluCI AATT 3 cut(s) 33, 257, 316
MlyI GAGTC 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 148
Mph1103I ATGCAT 1 cut(s) 421
MseI TTAA 2 cut(s) 96, 210
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 13, 440
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 57
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 3 cut(s) 73, 442, 528
NmuCI GTSAC 1 cut(s) 395
NsiI ATGCAT 1 cut(s) 421
PceI AGGCCT 1 cut(s) 288
PfeI GAWTC 1 cut(s) 536
PflMI CCANNNNNTGG 1 cut(s) 520
PkrI GCNGC 2 cut(s) 15, 310
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
PsiI TTATAA 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 385
Psp1406I AACGTT 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 73, 442, 528
PspPI GGNCC 1 cut(s) 456
RsaI GTAC 2 cut(s) 237, 499
RsaNI GTAC 2 cut(s) 236, 498
SacI GAGCTC 1 cut(s) 385
SaqAI TTAA 2 cut(s) 96, 210
SatI GCNGC 2 cut(s) 14, 309
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 456
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 54, 385
SetI ASST 9 cut(s) 18, 163, 180, 222, 274, 385, 453, 474, 659
SfaNI GCATC 1 cut(s) 428
SinI GGWCC 1 cut(s) 456
Sse9I AATT 3 cut(s) 33, 257, 316
SseBI AGGCCT 1 cut(s) 288
SsiI CCGC 1 cut(s) 309
SspI AATATT 1 cut(s) 100
SstI GAGCTC 1 cut(s) 385
StuI AGGCCT 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 2 cut(s) 136, 203
TaiI ACGT 2 cut(s) 222, 474
TaqI TCGA 1 cut(s) 406
TasI AATT 3 cut(s) 33, 257, 316
TatI WGTACW 1 cut(s) 235
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 1 cut(s) 536
Tru1I TTAA 2 cut(s) 96, 210
Tru9I TTAA 2 cut(s) 96, 210
TscAI CASTG 4 cut(s) 67, 139, 562, 631
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 10, 143
TspRI CASTG 4 cut(s) 67, 139, 562, 631
Van91I CCANNNNNTGG 1 cut(s) 520
VpaK11BI GGWCC 1 cut(s) 456
XapI RAATTY 1 cut(s) 316
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.