Rh7AG305200

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000423
Physical Location & Seq
Forward (+)
34052970 .. 34054709
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG305200.1

Sequence Viewer

Length: 825 bp
ATGAAGATGAAGCTTTTCCAGCTCTTTATCACTGCATCGATTCCAGTCTTGAAAACCCTATTGATTACTGCCCTTGGCTCATATCTTGCAACTGAACGCGTCAATATTCTGGGGGAAGACAGTAGGAAGCACTTAAACAGTGTTGTATTTTTCGTGTTCAATCCAGCCCTGGTTGGTTCCAGCCTTGCCCAGACCATAACATATCACAGTATGATTAAGCTGTGGTTCATGCCTGTGAACGTCCTCATGACCTTTATTGTTGGTTCAATATTTGGATGGATACTCATCCTATTAACAAGAACTCCTCCACGTCTTCGAGGTCTTACTGTGGGTTGCTGTGCTGCTGGAAATTTAGGGAACATGCTCCTTATTATAATCCCAGCTGTTTGTGAAGAAAAAGGGAGTCCATTTGGAGCTCCTGATGTTTGTTATGCTTACGGATTGGCATATGCTTCACTTTCAATGGCGATCTCGGCTGTTTATTTTTGGTCCTATGTTTATACTATTGTGAGGATATCTTCAAAGAGAGACACTCTTGATCAAGACACGATCCAATCTTTGGAGAGATCCTCCATCCCAAACCAAATCATGACACCTCCGGGCAAAATAATGAACCGTATAATGAAGGTGGTTAAAAAGCTCAATCTAGAAACGATCTTTTCCCCCTCAATAGTTGCAGCGATCGTTGGCTTTGTTATCGGAGTCATCCCTCCAGTTCGAAAAGTATTCATAGAAGATGGCGCTCCTCTACGGGTGATTAATGACACTGCTTCCTTGTTGGGGTATAAACTTAAGCAAAAACTGTGTCCAACTCCACGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

274

Amino Acids

30.19

Weight (kDa)

9.68

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 12 - 261 5.7e-49 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AccB7I CCANNNNNTGG 1 cut(s) 559
AccII CGCG 1 cut(s) 99
AclWI GGATC 2 cut(s) 544, 561
AcsI RAATTY 1 cut(s) 349
AfiI CCNNNNNNNGG 2 cut(s) 559, 780
AflII CTTAAG 1 cut(s) 791
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 5 cut(s) 52, 160, 267, 462, 522
AjiI CACGTC 1 cut(s) 311
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 6 cut(s) 13, 22, 220, 383, 416, 640
AluI AGCT 6 cut(s) 13, 22, 220, 383, 416, 640
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 1 cut(s) 522
AlwI GGATC 2 cut(s) 544, 561
ApeKI GCWGC 2 cut(s) 341, 677
ApoI RAATTY 1 cut(s) 349
ArsI GACNNNNNNTTYG 2 cut(s) 790, 822
AseI ATTAAT 1 cut(s) 759
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 743
AspS9I GGNCC 1 cut(s) 489
AsuC2I CCSGG 1 cut(s) 600
AsuHPI GGTGA 1 cut(s) 766
AsuII TTCGAA 1 cut(s) 718
AvaII GGWCC 1 cut(s) 489
BanII GRGCYC 1 cut(s) 418
BbsI GAAGAC 2 cut(s) 123, 305
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 2 cut(s) 328, 689
BccI CCATC 3 cut(s) 270, 581, 731
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 273
BclI TGATCA 1 cut(s) 538
BcnI CCSGG 1 cut(s) 600
BcoDI GTCTC 1 cut(s) 522
BfaI CTAG 1 cut(s) 647
BfoI RGCGCY 1 cut(s) 744
BfrI CTTAAG 1 cut(s) 791
BfuI GTATCC 1 cut(s) 273
BisI GCNGC 2 cut(s) 342, 678
BlsI GCNGC 2 cut(s) 343, 679
Bme1390I CCNGG 2 cut(s) 170, 600
Bme18I GGWCC 1 cut(s) 489
BmgBI CACGTC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 2 cut(s) 170, 600
BmsI GCATC 1 cut(s) 44
BpiI GAAGAC 2 cut(s) 123, 305
BplI GAGNNNNNCTC 4 cut(s) 517, 549, 554, 586
BpmI CTGGAG 1 cut(s) 696
Bpu14I TTCGAA 1 cut(s) 718
BpuMI CCSGG 1 cut(s) 600
Bsa29I ATCGAT 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 284
BsaJI CCNNGG 3 cut(s) 73, 168, 815
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 2 cut(s) 559, 780
Bse1I ACTGG 2 cut(s) 44, 713
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 38
BseDI CCNNGG 3 cut(s) 73, 168, 815
BseGI GGATG 4 cut(s) 281, 285, 573, 705
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 559, 780
BseNI ACTGG 2 cut(s) 44, 713
BseRI GAGGAG 2 cut(s) 294, 735
BseXI GCAGC 2 cut(s) 328, 689
BseYI CCCAGC 1 cut(s) 379
Bsh1236I CGCG 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 684
BshVI ATCGAT 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 599
BslI CCNNNNNNNGG 2 cut(s) 559, 780
BsmAI GTCTC 1 cut(s) 522
Bsp119I TTCGAA 1 cut(s) 718
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 6 cut(s) 468, 538, 549, 566, 654, 681
BspDI ATCGAT 1 cut(s) 38
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 2 cut(s) 246, 588
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 2 cut(s) 544, 561
BspT104I TTCGAA 1 cut(s) 718
BspTI CTTAAG 1 cut(s) 791
BsrI ACTGG 2 cut(s) 44, 713
BssECI CCNNGG 3 cut(s) 73, 168, 815
BssMI GATC 6 cut(s) 468, 538, 549, 566, 654, 681
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 6 cut(s) 122, 140, 209, 328, 617, 804
BstAFI CTTAAG 1 cut(s) 791
BstBI TTCGAA 1 cut(s) 718
BstDSI CCRYGG 1 cut(s) 815
BstF5I GGATG 4 cut(s) 281, 285, 573, 705
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 744
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 6 cut(s) 471, 541, 552, 569, 657, 684
BstMAI GTCTC 1 cut(s) 522
BstMBI GATC 6 cut(s) 468, 538, 549, 566, 654, 681
BstMCI CGRYCG 1 cut(s) 684
BstMWI GCNNNNNNNGC 2 cut(s) 19, 473
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 2 cut(s) 168, 598
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 328, 689
BstV2I GAAGAC 2 cut(s) 123, 305
BstX2I RGATCY 1 cut(s) 566
BstYI RGATCY 1 cut(s) 566
Bsu15I ATCGAT 1 cut(s) 38
BsuI GTATCC 1 cut(s) 273
BsuTUI ATCGAT 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 815
BtrI CACGTC 1 cut(s) 311
BtsCI GGATG 4 cut(s) 281, 285, 573, 705
BtsI GCAGTG 2 cut(s) 30, 765
BtsIMutI CAGTG 3 cut(s) 30, 145, 765
CciI TCATGA 2 cut(s) 246, 588
CfoI GCGC 1 cut(s) 743
Cfr13I GGNCC 1 cut(s) 489
ClaI ATCGAT 1 cut(s) 38
CseI GACGC 1 cut(s) 88
CviAII CATG 4 cut(s) 229, 247, 361, 589
DpnI GATC 6 cut(s) 470, 540, 551, 568, 656, 683
DpnII GATC 6 cut(s) 468, 538, 549, 566, 654, 681
Ecl136II GAGCTC 1 cut(s) 416
Eco130I CCWWGG 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 418
Eco32I GATATC 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 489
Eco53kI GAGCTC 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 168
EcoRV GATATC 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 4 cut(s) 232, 250, 364, 592
FatI CATG 4 cut(s) 228, 246, 360, 588
FauNDI CATATG 1 cut(s) 448
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 2 cut(s) 342, 678
FokI GGATG 4 cut(s) 272, 288, 560, 692
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 2 cut(s) 342, 678
FspBI CTAG 1 cut(s) 647
GlaI GCGC 1 cut(s) 742
GluI GCNGC 2 cut(s) 342, 678
GsaI CCCAGC 1 cut(s) 383
GsuI CTGGAG 1 cut(s) 696
HaeII RGCGCY 1 cut(s) 744
HapII CCGG 1 cut(s) 599
HgaI GACGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 743
Hin1II CATG 4 cut(s) 232, 250, 364, 592
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 40, 403, 702
HpaII CCGG 1 cut(s) 599
HphI GGTGA 1 cut(s) 766
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 701
Hpy188III TCNNGA 7 cut(s) 49, 247, 419, 536, 542, 589, 647
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 619
HpyCH4III ACNGT 6 cut(s) 122, 140, 209, 328, 617, 804
HpyCH4IV ACGT 2 cut(s) 240, 310
HpyCH4V TGCA 3 cut(s) 35, 89, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 473
HpySE526I ACGT 2 cut(s) 240, 310
Hsp92II CATG 4 cut(s) 232, 250, 364, 592
HspAI GCGC 1 cut(s) 741
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 6 cut(s) 468, 538, 549, 566, 654, 681
LmnI GCTCC 4 cut(s) 369, 413, 421, 748
Lsp1109I GCAGC 2 cut(s) 328, 689
LweI GCATC 1 cut(s) 44
MaeI CTAG 1 cut(s) 647
MaeII ACGT 2 cut(s) 240, 310
MalI GATC 6 cut(s) 470, 540, 551, 568, 656, 683
MboI GATC 6 cut(s) 468, 538, 549, 566, 654, 681
MboII GAAGA 6 cut(s) 16, 128, 305, 404, 510, 746
MflI RGATCY 1 cut(s) 566
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 1 cut(s) 349
MluI ACGCGT 1 cut(s) 97
MlyI GAGTC 2 cut(s) 412, 711
MnlI CCTC 9 cut(s) 254, 311, 315, 504, 580, 606, 676, 720, 756
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 6 cut(s) 134, 216, 293, 633, 759, 792
MslI CAYNNNNRTG 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 383
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 1 cut(s) 599
MspR9I CCNGG 2 cut(s) 170, 600
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 19, 473
NciI CCSGG 1 cut(s) 600
NdeI CATATG 1 cut(s) 448
NdeII GATC 6 cut(s) 468, 538, 549, 566, 654, 681
NlaIII CATG 4 cut(s) 232, 250, 364, 592
NlaIV GGNNCC 1 cut(s) 178
NmeAIII GCCGAG 1 cut(s) 452
NspI RCATGY 1 cut(s) 364
NspV TTCGAA 1 cut(s) 718
PagI TCATGA 2 cut(s) 246, 588
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 559
PkrI GCNGC 2 cut(s) 343, 679
Ple19I CGATCG 1 cut(s) 684
PleI GAGTC 2 cut(s) 411, 710
PpsI GAGTC 2 cut(s) 411, 710
PshBI ATTAAT 1 cut(s) 759
PsiI TTATAA 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 489
PsuI RGATCY 1 cut(s) 566
PvuI CGATCG 1 cut(s) 684
PvuII CAGCTG 1 cut(s) 383
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 418
SaqAI TTAA 6 cut(s) 134, 216, 293, 633, 759, 792
SatI GCNGC 2 cut(s) 342, 678
Sau3AI GATC 6 cut(s) 468, 538, 549, 566, 654, 681
Sau96I GGNCC 1 cut(s) 489
SchI GAGTC 2 cut(s) 412, 711
ScrFI CCNGG 2 cut(s) 170, 600
SduI GDGCHC 1 cut(s) 418
SfaNI GCATC 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 718
SinI GGWCC 1 cut(s) 489
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 1 cut(s) 349
SspI AATATT 2 cut(s) 106, 270
SspMI CTAG 1 cut(s) 647
SstI GAGCTC 1 cut(s) 418
StyD4I CCNGG 2 cut(s) 168, 598
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 6 cut(s) 122, 140, 209, 328, 617, 804
TaiI ACGT 2 cut(s) 243, 313
TaqI TCGA 3 cut(s) 38, 316, 718
TasI AATT 1 cut(s) 349
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 6 cut(s) 134, 216, 293, 633, 759, 792
Tru9I TTAA 6 cut(s) 134, 216, 293, 633, 759, 792
TscAI CASTG 3 cut(s) 37, 145, 772
TseI GCWGC 2 cut(s) 341, 677
TspDTI ATGAA 6 cut(s) 17, 23, 217, 626, 638, 718
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 3 cut(s) 37, 145, 772
Van91I CCANNNNNTGG 1 cut(s) 559
Vha464I CTTAAG 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 489
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 1 cut(s) 349
XbaI TCTAGA 1 cut(s) 646
XceI RCATGY 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.