Rh7AG305900

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000423
Physical Location & Seq
Forward (+)
34236544 .. 34239293
2750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG305900.1

Sequence Viewer

Length: 795 bp
ATGGCGCTTTTGCAGCTTTTCATCACAGCCTCAATTCCGGTCTTGAAAGTGCTCTTGATCACTGCACTTGGTTCCTATCTTGCACTTGAGCGCGTTAATATTCTGGGGGAAGAAACCAGGAAGAACATGAACACTGTTGTTTTTTATGTTTTCAGTCCAGCTCTGGTTGGAACTAACCTTGCCCAGACTATTACATATGACAGTATGATTAAACTGTGGTTTATGCCTGTGAACATCTTAATCACGTTTATTGTTGGTTCTGTACTTGGATGGATACTCATCCAATTAGCAAGACCACCTCCACATCTCCGAGGCCTCATTTTGGGTTGCTGTGCCGCTGGAAATTTGGGGAACTTGCTGCTCATTATAATCCCAGCAGTCTGTAAAGAGAAGGGAAGCCCATTTGGAGCTCCTGATGTCTGTCACACTGATGGAATGGCTTATGCATCACTTTCACTGGCGATAGGAGCCATTTACCTTTGGTCCTATGTGTATAACGTTGTGCGGATATCTTCAAAGAGGAGTACCCAAGACTCCCCCCAGTCTTTGGAGGAACCCTCCGAATCAAATCAAGTAAGTTGCACTGAGCCTCTGCTTTCTTCCAAGGAATGTGGGATAGTGGAGGACAATACCGATCAGTATGCACTGCCCTGCACTATATCTCAACAAGACTCTAAGATCAATCCTAAGATAGATTTAACACAACTGCAAATATGCTTGAGGAAAGCAAAGAAAGTTCACTACAGAACATCTGTTAGCGAGCAATTCGAGAATCCATCCATGTTCCACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

264

Amino Acids

29.08

Weight (kDa)

6.88

Isoelectric Point (pI)

60.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 219 5.4e-43 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 547
AccII CGCG 1 cut(s) 93
AciI CCGC 2 cut(s) 336, 505
AclI AACGTT 1 cut(s) 498
AcsI RAATTY 1 cut(s) 343
AfaI GTAC 2 cut(s) 264, 526
AfiI CCNNNNNNNGG 2 cut(s) 322, 547
AflIII ACRYGT 1 cut(s) 789
AgsI TTSAA 2 cut(s) 46, 516
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 3 cut(s) 16, 161, 410
AluI AGCT 3 cut(s) 16, 161, 410
Alw21I GWGCWC 2 cut(s) 54, 412
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 2 cut(s) 13, 358
ApoI RAATTY 1 cut(s) 343
AspLEI GCGC 2 cut(s) 7, 93
AspS9I GGNCC 1 cut(s) 483
AvaII GGWCC 1 cut(s) 483
BanII GRGCYC 1 cut(s) 412
Bbv12I GWGCWC 2 cut(s) 54, 412
BbvI GCAGC 2 cut(s) 25, 345
BccI CCATC 3 cut(s) 264, 425, 784
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 267
BclI TGATCA 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 742
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 267
BisI GCNGC 3 cut(s) 14, 336, 359
BlsI GCNGC 3 cut(s) 15, 337, 360
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 3 cut(s) 73, 469, 555
BmrFI CCNGG 1 cut(s) 118
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 1 cut(s) 455
BmuI ACTGGG 1 cut(s) 535
BplI GAGNNNNNCTC 2 cut(s) 542, 574
BpuEI CTTGAG 2 cut(s) 107, 739
BsaBI GATNNNNATC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 310, 603
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 547
Bse1I ACTGG 2 cut(s) 462, 541
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 310, 603
BseGI GGATG 3 cut(s) 275, 279, 776
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 2 cut(s) 322, 547
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 2 cut(s) 462, 541
BseRI GAGGAG 1 cut(s) 535
BseXI GCAGC 2 cut(s) 25, 345
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 2 cut(s) 48, 637
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 54, 412
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 322, 547
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 54, 412
Bsp143I GATC 3 cut(s) 57, 634, 678
BspACI CCGC 2 cut(s) 336, 505
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 73, 469, 555
BsrI ACTGG 2 cut(s) 462, 541
BssECI CCNNGG 2 cut(s) 310, 603
BssMI GATC 3 cut(s) 57, 634, 678
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 3 cut(s) 136, 203, 216
BstC8I GCNNGC 1 cut(s) 761
BstDEI CTNAG 3 cut(s) 585, 675, 687
BstF5I GGATG 3 cut(s) 275, 279, 776
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 93
BstKTI GATC 3 cut(s) 60, 637, 681
BstMBI GATC 3 cut(s) 57, 634, 678
BstMWI GCNNNNNNNGC 2 cut(s) 13, 467
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 793
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 742
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 25, 345
BsuI GTATCC 1 cut(s) 267
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 3 cut(s) 275, 279, 776
BtsI GCAGTG 2 cut(s) 60, 644
BtsIMutI CAGTG 6 cut(s) 60, 132, 426, 455, 582, 644
Cac8I GCNNGC 1 cut(s) 761
CfoI GCGC 2 cut(s) 7, 93
Cfr13I GGNCC 1 cut(s) 483
Csp6I GTAC 2 cut(s) 263, 525
CspCI CAANNNNNGTGG 2 cut(s) 592, 627
CviAII CATG 3 cut(s) 127, 781, 790
CviJI RGCY 9 cut(s) 16, 29, 161, 315, 399, 410, 440, 470, 589
CviKI_1 RGCY 9 cut(s) 16, 29, 161, 315, 399, 410, 440, 470, 589
CviQI GTAC 2 cut(s) 263, 525
DdeI CTNAG 3 cut(s) 585, 675, 687
DpnI GATC 3 cut(s) 59, 636, 680
DpnII GATC 3 cut(s) 57, 634, 678
Ecl136II GAGCTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 412
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 483
Eco53kI GAGCTC 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 116
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 3 cut(s) 130, 784, 793
FatI CATG 3 cut(s) 126, 780, 789
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 14, 336, 359
FokI GGATG 3 cut(s) 266, 282, 763
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 3 cut(s) 14, 336, 359
GlaI GCGC 2 cut(s) 6, 92
GluI GCNGC 3 cut(s) 14, 336, 359
GsaI CCCAGC 1 cut(s) 377
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 38
HhaI GCGC 2 cut(s) 7, 93
Hin1II CATG 3 cut(s) 130, 784, 793
Hin6I GCGC 2 cut(s) 5, 91
HinP1I GCGC 2 cut(s) 5, 91
HinfI GANTC 4 cut(s) 533, 563, 671, 772
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 2 cut(s) 232, 739
Hpy188I TCNGA 2 cut(s) 311, 562
Hpy188III TCNNGA 4 cut(s) 43, 55, 413, 769
Hpy8I GTNNAC 2 cut(s) 232, 739
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 3 cut(s) 136, 203, 216
HpyCH4IV ACGT 2 cut(s) 245, 498
HpyCH4V TGCA 8 cut(s) 13, 65, 83, 446, 582, 644, 654, 709
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 467
HpyF3I CTNAG 3 cut(s) 585, 675, 687
HpySE526I ACGT 2 cut(s) 245, 498
Hsp92II CATG 3 cut(s) 130, 784, 793
HspAI GCGC 2 cut(s) 5, 91
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 3 cut(s) 57, 634, 678
LmnI GCTCC 3 cut(s) 407, 415, 467
Lsp1109I GCAGC 2 cut(s) 25, 345
LweI GCATC 1 cut(s) 455
MaeII ACGT 2 cut(s) 245, 498
MaeIII GTNAC 1 cut(s) 422
MalI GATC 3 cut(s) 59, 636, 680
MboI GATC 3 cut(s) 57, 634, 678
MboII GAAGA 4 cut(s) 122, 133, 504, 591
MhlI GDGCHC 2 cut(s) 54, 412
MluCI AATT 4 cut(s) 33, 284, 343, 764
MlyI GAGTC 2 cut(s) 527, 665
MmeI TCCRAC 1 cut(s) 148
Mph1103I ATGCAT 1 cut(s) 448
MseI TTAA 4 cut(s) 96, 210, 239, 698
MslI CAYNNNNRTG 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 13, 467
NdeI CATATG 1 cut(s) 196
NdeII GATC 3 cut(s) 57, 634, 678
NlaIII CATG 3 cut(s) 130, 784, 793
NlaIV GGNNCC 3 cut(s) 73, 469, 555
NmuCI GTSAC 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 1 cut(s) 793
PceI AGGCCT 1 cut(s) 315
PciI ACATGT 1 cut(s) 789
PfeI GAWTC 2 cut(s) 563, 772
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 3 cut(s) 15, 337, 360
PleI GAGTC 2 cut(s) 527, 665
PpsI GAGTC 2 cut(s) 527, 665
PscI ACATGT 1 cut(s) 789
PsiI TTATAA 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 412
Psp1406I AACGTT 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 73, 469, 555
PspPI GGNCC 1 cut(s) 483
RsaI GTAC 2 cut(s) 264, 526
RsaNI GTAC 2 cut(s) 263, 525
RseI CAYNNNNRTG 1 cut(s) 429
SacI GAGCTC 1 cut(s) 412
SaqAI TTAA 4 cut(s) 96, 210, 239, 698
SatI GCNGC 3 cut(s) 14, 336, 359
Sau3AI GATC 3 cut(s) 57, 634, 678
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 2 cut(s) 527, 665
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 54, 412
SetI ASST 8 cut(s) 18, 163, 180, 248, 301, 412, 480, 501
SfaNI GCATC 1 cut(s) 455
SfcI CTRYAG 1 cut(s) 742
SinI GGWCC 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 2 cut(s) 86, 718
SmoI CTYRAG 2 cut(s) 86, 718
Sse9I AATT 4 cut(s) 33, 284, 343, 764
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 2 cut(s) 336, 505
SspI AATATT 1 cut(s) 100
SstI GAGCTC 1 cut(s) 412
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 3 cut(s) 136, 203, 216
TaiI ACGT 2 cut(s) 248, 501
TaqI TCGA 1 cut(s) 768
TasI AATT 4 cut(s) 33, 284, 343, 764
TatI WGTACW 1 cut(s) 262
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 2 cut(s) 563, 772
Tru1I TTAA 4 cut(s) 96, 210, 239, 698
Tru9I TTAA 4 cut(s) 96, 210, 239, 698
TscAI CASTG 6 cut(s) 67, 139, 433, 462, 589, 651
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 2 cut(s) 13, 358
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 10, 143
TspRI CASTG 6 cut(s) 67, 139, 433, 462, 589, 651
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 483
XapI RAATTY 1 cut(s) 343
XceI RCATGY 1 cut(s) 793
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.