FvH4_5g26330

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000423
Physical Location & Seq
Forward (+)
17850661 .. 17855333
4673 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26330.t6

Sequence Viewer

Length: 1221 bp
ATGAATCTTTGGACTCTCTTCGTCACCGCATCGATTCCAGTGCTGGAATCGTTCTTGATTACTGCGCTTGGCTCATATCTTGCACTTGATCGCGTCAACCTTCTGGGGCCAGATAGCAGGAACCACTTGAACACTATTTTGTTCTACGTTTGCACTCCAGCCCTGATCGGTGCCAACCTTGCAGAGACAATAACATATGAGAGCCTAGTTAAGTTGTGGTTCATGCCGGTAAATATTTTTCTTACATTCATGGTTGGTTCAATATTTGGATGGATACTCATGAAATTAACCAGAACTCCTCCACATTTGCGAGGTCTCGTCTTGGGTTGTTGCGCTGCGGGAAATTTGGGAAACCTTCTCCTCATTATAATTCCAGCAGTTTGTGAAGAATCAGGGAGTCCATTTGGAGATGCTGATACCTGTGATACTACTGGAACTACTTATGCTTCACTTTCAATGGCGATTGGAGCCATTTATTTGTGGACCTATGTGTATAATATAGTGCGCATATCTTCAAAGACGAGCATCCAAGATCCCACGCAGACCACCGAGAGTTCATCATCAACATCCGGCCACATAAGTTACAACGAGCCTCTGCTTTCTATAGAGGACAATGTGGATCAATCTGAACTCCCCAGTAATGTATCTCAAGGAGAGGTTAAGATGACGCGTCTAGGCAAAATAAAGGAATGGATGGTGAAGATGAACAAAAAGCTCAATTTGAAAACAGTATTTTCCCCCTCAACTATAGCAGTGATTATTGGGTTTGCAGTCGGAATCATCTCTCCAATTCGTAACTTATTGATCGGAGACGACGCTCCTCTAGCGGTGATCGATGACGCTACTTCGTTGTTAGGAGACGCTGCTATCCCGCTCCTTACTTTGATAATAGGAGGTAACCTTGTGAAAGGTTTAAGAGTGGGAGGGATACAAAAATCTATCCTTATTGGCATCATAATTGTTAAGTATGTTGCGGCACCTCTTACAGGAGTGTTGATTGTTAAAGGAGCAGTAAAATTTGGCTTTGTAAGCAACGATCCATTGTACCTGTTTGTTCTTCTGCTTCAGTTCGCTGTACCTCCTGCGATGAACATGGGAACCATCACACAATTGTTCAGACAAGGAGAGAGTGAGTGTTCAGTTATCATGCTCTGGACTTACATTTTTGCTTCAGTAGCGCTTACGTTTTGGTGTGCCTTCTTCTTGTGGCTTGTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

407

Amino Acids

44.06

Weight (kDa)

5.5

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 366 1.7e-65 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 368
Acc16I TGCGCA 1 cut(s) 506
AccB1I GGYRCC 2 cut(s) 170, 976
AccBSI CCGCTC 1 cut(s) 874
AccII CGCG 2 cut(s) 93, 670
AciI CCGC 5 cut(s) 27, 338, 827, 872, 974
AclWI GGATC 3 cut(s) 527, 627, 1031
AcoI YGGCCR 1 cut(s) 571
AcsI RAATTY 2 cut(s) 343, 1016
AcuI CTGAAG 2 cut(s) 1049, 1155
AfaI GTAC 2 cut(s) 1046, 1077
AfeI AGCGCT 1 cut(s) 1179
AfiI CCNNNNNNNGG 1 cut(s) 986
AflIII ACRYGT 1 cut(s) 668
AgsI TTSAA 5 cut(s) 130, 261, 456, 516, 724
AluBI AGCT 1 cut(s) 715
AluI AGCT 1 cut(s) 715
Alw26I GTCTC 4 cut(s) 179, 320, 804, 852
AlwI GGATC 3 cut(s) 527, 627, 1031
Aor51HI AGCGCT 1 cut(s) 1179
AoxI GGCC 2 cut(s) 107, 571
ApeKI GCWGC 2 cut(s) 335, 863
ApoI RAATTY 2 cut(s) 343, 1016
AspLEI GCGC 4 cut(s) 67, 335, 507, 1180
AspS9I GGNCC 2 cut(s) 107, 483
AsuHPI GGTGA 3 cut(s) 16, 709, 841
AvaII GGWCC 1 cut(s) 483
BanI GGYRCC 2 cut(s) 170, 976
BbvI GCAGC 2 cut(s) 322, 850
BccI CCATC 3 cut(s) 264, 688, 1109
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciVI GTATCC 2 cut(s) 267, 921
BcoDI GTCTC 4 cut(s) 179, 320, 804, 852
BfaI CTAG 3 cut(s) 206, 674, 824
BfmI CTRYAG 2 cut(s) 603, 747
BfoI RGCGCY 1 cut(s) 1181
BfuI GTATCC 2 cut(s) 267, 921
BisI GCNGC 3 cut(s) 336, 864, 975
BlsI GCNGC 3 cut(s) 337, 865, 976
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 2 cut(s) 107, 483
BmiI GGNNCC 6 cut(s) 108, 122, 172, 469, 978, 1099
BmrI ACTGGG 1 cut(s) 630
BmsI GCATC 4 cut(s) 38, 400, 534, 960
BmuI ACTGGG 1 cut(s) 630
BpmI CTGGAG 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 633
Bsa29I ATCGAT 2 cut(s) 32, 834
BsaI GGTCTC 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 986
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 3 cut(s) 38, 436, 636
BseCI ATCGAT 2 cut(s) 32, 834
BseGI GGATG 4 cut(s) 275, 525, 566, 699
BseLI CCNNNNNNNGG 1 cut(s) 986
BseNI ACTGG 3 cut(s) 38, 436, 636
BseRI GAGGAG 3 cut(s) 288, 350, 810
BseXI GCAGC 2 cut(s) 322, 850
Bsh1236I CGCG 2 cut(s) 93, 670
BshFI GGCC 2 cut(s) 109, 573
BshNI GGYRCC 2 cut(s) 170, 976
BshVI ATCGAT 2 cut(s) 32, 834
BsiSI CCGG 2 cut(s) 227, 570
BslI CCNNNNNNNGG 1 cut(s) 986
BsmAI GTCTC 4 cut(s) 179, 320, 804, 852
BsmBI CGTCTC 2 cut(s) 804, 852
BsnI GGCC 2 cut(s) 109, 573
Bso31I GGTCTC 1 cut(s) 320
Bsp143I GATC 7 cut(s) 88, 165, 532, 619, 804, 831, 1036
BspACI CCGC 5 cut(s) 27, 338, 827, 872, 974
BspANI GGCC 2 cut(s) 109, 573
BspDI ATCGAT 2 cut(s) 32, 834
BspFNI CGCG 2 cut(s) 93, 670
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 6 cut(s) 108, 122, 172, 469, 978, 1099
BspPI GGATC 3 cut(s) 527, 627, 1031
BspT107I GGYRCC 2 cut(s) 170, 976
BspTNI GGTCTC 1 cut(s) 320
BsrBI CCGCTC 1 cut(s) 874
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 3 cut(s) 38, 436, 636
BssAI RCCGGY 1 cut(s) 226
BssMI GATC 7 cut(s) 88, 165, 532, 619, 804, 831, 1036
Bst4CI ACNGT 1 cut(s) 730
Bst6I CTCTTC 1 cut(s) 23
BstEII GGTNACC 1 cut(s) 896
BstENI CCTNNNNNAGG 1 cut(s) 984
BstF5I GGATG 4 cut(s) 275, 525, 566, 699
BstFNI CGCG 2 cut(s) 93, 670
BstH2I RGCGCY 1 cut(s) 1181
BstHHI GCGC 4 cut(s) 67, 335, 507, 1180
BstKTI GATC 7 cut(s) 91, 168, 535, 622, 807, 834, 1039
BstMAI GTCTC 4 cut(s) 179, 320, 804, 852
BstMBI GATC 7 cut(s) 88, 165, 532, 619, 804, 831, 1036
BstMWI GCNNNNNNNGC 5 cut(s) 179, 467, 824, 1029, 1175
BstPI GGTNACC 1 cut(s) 896
BstSFI CTRYAG 2 cut(s) 603, 747
BstUI CGCG 2 cut(s) 93, 670
BstV1I GCAGC 2 cut(s) 322, 850
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
Bsu15I ATCGAT 2 cut(s) 32, 834
BsuI GTATCC 2 cut(s) 267, 921
BsuRI GGCC 2 cut(s) 109, 573
BsuTUI ATCGAT 2 cut(s) 32, 834
BtgZI GCGATG 1 cut(s) 1100
BtsCI GGATG 4 cut(s) 275, 525, 566, 699
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 2 cut(s) 45, 759
CciI TCATGA 1 cut(s) 279
CfoI GCGC 4 cut(s) 67, 335, 507, 1180
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 107, 483
ClaI ATCGAT 2 cut(s) 32, 834
CseI GACGC 6 cut(s) 82, 659, 676, 824, 848, 869
Csp6I GTAC 2 cut(s) 1045, 1076
CviAII CATG 5 cut(s) 223, 250, 280, 1093, 1147
CviQI GTAC 2 cut(s) 1045, 1076
DpnI GATC 7 cut(s) 90, 167, 534, 621, 806, 833, 1038
DpnII GATC 7 cut(s) 88, 165, 532, 619, 804, 831, 1036
EaeI YGGCCR 1 cut(s) 571
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 483
Eco47III AGCGCT 1 cut(s) 1179
Eco57I CTGAAG 2 cut(s) 1049, 1155
Eco91I GGTNACC 1 cut(s) 896
EcoNI CCTNNNNNAGG 1 cut(s) 984
EcoO65I GGTNACC 1 cut(s) 896
Esp3I CGTCTC 2 cut(s) 804, 852
FaeI CATG 5 cut(s) 226, 253, 283, 1096, 1150
FatI CATG 5 cut(s) 222, 249, 279, 1092, 1146
FauI CCCGC 2 cut(s) 331, 879
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 336, 864, 975
FokI GGATG 4 cut(s) 282, 512, 553, 706
Fsp4HI GCNGC 3 cut(s) 336, 864, 975
FspAI RTGCGCAY 1 cut(s) 506
FspBI CTAG 3 cut(s) 206, 674, 824
FspI TGCGCA 1 cut(s) 506
GlaI GCGC 4 cut(s) 66, 334, 506, 1179
GluI GCNGC 3 cut(s) 336, 864, 975
GsuI CTGGAG 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 1181
HaeIII GGCC 2 cut(s) 109, 573
HapII CCGG 2 cut(s) 227, 570
HgaI GACGC 6 cut(s) 82, 659, 676, 824, 848, 869
HhaI GCGC 4 cut(s) 67, 335, 507, 1180
Hin1II CATG 5 cut(s) 226, 253, 283, 1096, 1150
Hin6I GCGC 4 cut(s) 65, 333, 505, 1178
HinP1I GCGC 4 cut(s) 65, 333, 505, 1178
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 7 cut(s) 4, 13, 34, 47, 389, 397, 777
HpaII CCGG 2 cut(s) 227, 570
HphI GGTGA 3 cut(s) 16, 709, 841
Hpy166II GTNNAC 2 cut(s) 97, 483
Hpy188I TCNGA 4 cut(s) 628, 776, 809, 1118
Hpy188III TCNNGA 3 cut(s) 55, 280, 1153
Hpy8I GTNNAC 2 cut(s) 97, 483
Hpy99I CGWCG 1 cut(s) 818
HpyAV CCTTC 3 cut(s) 110, 365, 1207
HpyCH4III ACNGT 1 cut(s) 730
HpyCH4IV ACGT 2 cut(s) 147, 1184
HpyCH4V TGCA 4 cut(s) 83, 153, 182, 770
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 467, 824, 1029, 1175
HpySE526I ACGT 2 cut(s) 147, 1184
Hsp92II CATG 5 cut(s) 226, 253, 283, 1096, 1150
HspAI GCGC 4 cut(s) 65, 333, 505, 1178
Kzo9I GATC 7 cut(s) 88, 165, 532, 619, 804, 831, 1036
LmnI GCTCC 4 cut(s) 467, 823, 879, 1007
Lsp1109I GCAGC 2 cut(s) 322, 850
LweI GCATC 4 cut(s) 38, 400, 534, 960
MaeI CTAG 3 cut(s) 206, 674, 824
MaeII ACGT 2 cut(s) 147, 1184
MaeIII GTNAC 4 cut(s) 22, 581, 794, 896
MalI GATC 7 cut(s) 90, 167, 534, 621, 806, 833, 1038
MbiI CCGCTC 1 cut(s) 874
MboI GATC 7 cut(s) 88, 165, 532, 619, 804, 831, 1036
MboII GAAGA 6 cut(s) 10, 398, 504, 712, 1049, 1192
MfeI CAATTG 1 cut(s) 1109
MflI RGATCY 1 cut(s) 532
MluCI AATT 8 cut(s) 284, 343, 369, 718, 789, 957, 1016, 1109
MluI ACGCGT 1 cut(s) 668
MlyI GAGTC 2 cut(s) 7, 406
MmeI TCCRAC 1 cut(s) 754
MseI TTAA 6 cut(s) 210, 287, 660, 914, 963, 1002
MspI CCGG 2 cut(s) 227, 570
MunI CAATTG 1 cut(s) 1109
MvnI CGCG 2 cut(s) 93, 670
MwoI GCNNNNNNNGC 5 cut(s) 179, 467, 824, 1029, 1175
NdeI CATATG 1 cut(s) 196
NdeII GATC 7 cut(s) 88, 165, 532, 619, 804, 831, 1036
NlaIII CATG 5 cut(s) 226, 253, 283, 1096, 1150
NlaIV GGNNCC 6 cut(s) 108, 122, 172, 469, 978, 1099
NmuCI GTSAC 1 cut(s) 22
NsbI TGCGCA 1 cut(s) 506
PagI TCATGA 1 cut(s) 279
PfeI GAWTC 5 cut(s) 4, 34, 47, 389, 777
PkrI GCNGC 3 cut(s) 337, 865, 976
PleI GAGTC 2 cut(s) 7, 405
PpsI GAGTC 2 cut(s) 7, 405
PsiI TTATAA 1 cut(s) 368
PspEI GGTNACC 1 cut(s) 896
PspN4I GGNNCC 6 cut(s) 108, 122, 172, 469, 978, 1099
PspPI GGNCC 2 cut(s) 107, 483
PsuI RGATCY 1 cut(s) 532
RsaI GTAC 2 cut(s) 1046, 1077
RsaNI GTAC 2 cut(s) 1045, 1076
SaqAI TTAA 6 cut(s) 210, 287, 660, 914, 963, 1002
SatI GCNGC 3 cut(s) 336, 864, 975
Sau3AI GATC 7 cut(s) 88, 165, 532, 619, 804, 831, 1036
Sau96I GGNCC 2 cut(s) 107, 483
SchI GAGTC 2 cut(s) 7, 406
SfaNI GCATC 4 cut(s) 38, 400, 534, 960
SfcI CTRYAG 2 cut(s) 603, 747
SinI GGWCC 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 648
SmoI CTYRAG 1 cut(s) 648
Sse9I AATT 8 cut(s) 284, 343, 369, 718, 789, 957, 1016, 1109
SsiI CCGC 5 cut(s) 27, 338, 827, 872, 974
SspI AATATT 2 cut(s) 235, 264
SspMI CTAG 3 cut(s) 206, 674, 824
TaaI ACNGT 1 cut(s) 730
TaiI ACGT 2 cut(s) 150, 1187
TaqI TCGA 2 cut(s) 32, 834
TasI AATT 8 cut(s) 284, 343, 369, 718, 789, 957, 1016, 1109
TauI GCSGC 1 cut(s) 977
TfiI GAWTC 5 cut(s) 4, 34, 47, 389, 777
Tru1I TTAA 6 cut(s) 210, 287, 660, 914, 963, 1002
Tru9I TTAA 6 cut(s) 210, 287, 660, 914, 963, 1002
TscAI CASTG 2 cut(s) 45, 759
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 2 cut(s) 335, 863
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 7 cut(s) 17, 211, 238, 296, 546, 719, 1103
TspRI CASTG 2 cut(s) 45, 759
VpaK11BI GGWCC 1 cut(s) 483
XagI CCTNNNNNAGG 1 cut(s) 984
XapI RAATTY 2 cut(s) 343, 1016
XspI CTAG 3 cut(s) 206, 674, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.