Rmu_sc0018492.1_g000001

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018492.1
OG0000423
Physical Location & Seq
Reverse (-)
1 .. 1533
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018492.1_g000001.1.cds

Sequence Viewer

Length: 771 bp
atggcgcttttgcagctcttcatcaccgcatcgattccggtcttgaaagtgctcttgatcactgcacttggctcctatcttgcacttgggcgcgttaatattctgggggaagataccaggaagaacttgaacactgttgtattttatgtattcagtccagctctggtggtaactaaccttgctcagactattacatatgacagtttgattaaactgtggtttatgccattgaacatcttaatcaccttcattgttggttctgtacttggatggatactcatccaattagcaagaccacctccacatctccgaggcctcattttgggttgctgtgcggctggaaatttggggaacttgctcctcattatagtcccagcagtctgtaaagagaagggaagcccatttggagctcctgatgtctgtcacacttatggaatggcttatgcatcactttcaatggcaacaggagtcatttatatttggtcctatgtgtataacattgtgaggatatcttcaaagaggagtacccaagactccccccagtctttggaggaaccctccgaatcaaaccaagtaagttgcaccgagcctctgctttcttccaaggaatatgggatagtagaggacaatgccgatcagtatgcactgccctgcactatatctcaacaagactctaagatagaacctccgagtaaatccaagaactgtctagtgagactgtttcaaaagcttaatctgaaaacgatatttgccccttcaactattggagcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

257

Amino Acids

28.01

Weight (kDa)

8.43

Isoelectric Point (pI)

60.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 547
AccII CGCG 1 cut(s) 93
AciI CCGC 2 cut(s) 27, 335
AcsI RAATTY 1 cut(s) 343
AfaI GTAC 2 cut(s) 264, 526
AfiI CCNNNNNNNGG 2 cut(s) 322, 547
AgsI TTSAA 7 cut(s) 46, 130, 232, 456, 516, 725, 759
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 4 cut(s) 16, 161, 410, 730
AluI AGCT 4 cut(s) 16, 161, 410, 730
Alw21I GWGCWC 2 cut(s) 54, 412
Alw26I GTCTC 1 cut(s) 709
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 343
AspLEI GCGC 2 cut(s) 7, 93
AspS9I GGNCC 1 cut(s) 483
AsuHPI GGTGA 2 cut(s) 16, 235
AvaII GGWCC 1 cut(s) 483
BanII GRGCYC 1 cut(s) 412
Bbv12I GWGCWC 2 cut(s) 54, 412
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 264
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 267
BclI TGATCA 1 cut(s) 57
BcoDI GTCTC 1 cut(s) 709
BfaI CTAG 1 cut(s) 710
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 267
BisI GCNGC 2 cut(s) 14, 336
BlsI GCNGC 2 cut(s) 15, 337
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 2 cut(s) 73, 555
BmrFI CCNGG 1 cut(s) 118
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 2 cut(s) 38, 455
BmuI ACTGGG 1 cut(s) 535
BplI GAGNNNNNCTC 2 cut(s) 542, 574
Bsa29I ATCGAT 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 310, 603
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 547
Bse1I ACTGG 1 cut(s) 541
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 1 cut(s) 118
BseCI ATCGAT 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 310, 603
BseGI GGATG 2 cut(s) 275, 279
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 2 cut(s) 322, 547
BseMII CTCAG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 2 cut(s) 350, 535
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 2 cut(s) 48, 637
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 315
BshVI ATCGAT 1 cut(s) 32
BsiHKAI GWGCWC 2 cut(s) 54, 412
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 322, 547
BsmAI GTCTC 1 cut(s) 709
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 54, 412
Bsp143I GATC 2 cut(s) 57, 634
BspACI CCGC 2 cut(s) 27, 335
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 196
BspDI ATCGAT 1 cut(s) 32
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 73, 555
BspQI GCTCTTC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 2 cut(s) 310, 603
BssMI GATC 2 cut(s) 57, 634
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 5 cut(s) 136, 203, 216, 707, 720
Bst6I CTCTTC 1 cut(s) 23
BstDEI CTNAG 2 cut(s) 183, 675
BstF5I GGATG 2 cut(s) 275, 279
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 93
BstKTI GATC 2 cut(s) 60, 637
BstMAI GTCTC 1 cut(s) 709
BstMBI GATC 2 cut(s) 57, 634
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 25
Bsu15I ATCGAT 1 cut(s) 32
BsuI GTATCC 1 cut(s) 267
BsuRI GGCC 1 cut(s) 315
BsuTUI ATCGAT 1 cut(s) 32
BtsCI GGATG 2 cut(s) 275, 279
BtsI GCAGTG 2 cut(s) 60, 644
BtsIMutI CAGTG 3 cut(s) 60, 132, 644
CfoI GCGC 2 cut(s) 7, 93
Cfr13I GGNCC 1 cut(s) 483
ClaI ATCGAT 1 cut(s) 32
Csp6I GTAC 2 cut(s) 263, 525
CviQI GTAC 2 cut(s) 263, 525
DdeI CTNAG 2 cut(s) 183, 675
DpnI GATC 2 cut(s) 59, 636
DpnII GATC 2 cut(s) 57, 634
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 412
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 483
Eco53kI GAGCTC 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 116
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 603
FaqI GGGAC 1 cut(s) 356
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 14, 336
FokI GGATG 2 cut(s) 266, 282
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 2 cut(s) 14, 336
FspBI CTAG 1 cut(s) 710
GlaI GCGC 2 cut(s) 6, 92
GluI GCNGC 2 cut(s) 14, 336
GsaI CCCAGC 1 cut(s) 377
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 38
HhaI GCGC 2 cut(s) 7, 93
Hin6I GCGC 2 cut(s) 5, 91
HinP1I GCGC 2 cut(s) 5, 91
HindIII AAGCTT 1 cut(s) 728
HinfI GANTC 5 cut(s) 34, 468, 533, 563, 671
HpaII CCGG 1 cut(s) 38
HphI GGTGA 2 cut(s) 16, 235
Hpy188I TCNGA 5 cut(s) 186, 311, 562, 690, 738
Hpy188III TCNNGA 3 cut(s) 43, 55, 413
HpyAV CCTTC 3 cut(s) 256, 385, 765
HpyCH4III ACNGT 5 cut(s) 136, 203, 216, 707, 720
HpyCH4V TGCA 7 cut(s) 13, 65, 83, 446, 582, 644, 654
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 183, 675
HspAI GCGC 2 cut(s) 5, 91
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 2 cut(s) 57, 634
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 5 cut(s) 77, 363, 407, 415, 767
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 2 cut(s) 38, 455
MaeI CTAG 1 cut(s) 710
MaeIII GTNAC 2 cut(s) 169, 422
MalI GATC 2 cut(s) 59, 636
MboI GATC 2 cut(s) 57, 634
MboII GAAGA 5 cut(s) 10, 122, 133, 504, 591
MhlI GDGCHC 2 cut(s) 54, 412
MluCI AATT 2 cut(s) 284, 343
MlyI GAGTC 3 cut(s) 477, 527, 665
Mph1103I ATGCAT 1 cut(s) 448
MseI TTAA 4 cut(s) 96, 210, 239, 732
MslI CAYNNNNRTG 1 cut(s) 429
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeI CATATG 1 cut(s) 196
NdeII GATC 2 cut(s) 57, 634
NlaIV GGNNCC 2 cut(s) 73, 555
NmuCI GTSAC 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 448
PceI AGGCCT 1 cut(s) 315
PciSI GCTCTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 34, 563
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 2 cut(s) 15, 337
PleI GAGTC 3 cut(s) 476, 527, 665
PpsI GAGTC 3 cut(s) 476, 527, 665
Psp124BI GAGCTC 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 73, 555
PspPI GGNCC 1 cut(s) 483
RsaI GTAC 2 cut(s) 264, 526
RsaNI GTAC 2 cut(s) 263, 525
RseI CAYNNNNRTG 1 cut(s) 429
SacI GAGCTC 1 cut(s) 412
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 4 cut(s) 96, 210, 239, 732
SatI GCNGC 2 cut(s) 14, 336
Sau3AI GATC 2 cut(s) 57, 634
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 3 cut(s) 477, 527, 665
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 54, 412
SetI ASST 8 cut(s) 18, 163, 180, 248, 301, 412, 688, 732
SfaNI GCATC 2 cut(s) 38, 455
SinI GGWCC 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 429
Sse9I AATT 2 cut(s) 284, 343
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 2 cut(s) 27, 335
SspI AATATT 1 cut(s) 100
SspMI CTAG 1 cut(s) 710
SstI GAGCTC 1 cut(s) 412
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 5 cut(s) 136, 203, 216, 707, 720
TaqI TCGA 1 cut(s) 32
TasI AATT 2 cut(s) 284, 343
TatI WGTACW 1 cut(s) 262
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 2 cut(s) 34, 563
Tru1I TTAA 4 cut(s) 96, 210, 239, 732
Tru9I TTAA 4 cut(s) 96, 210, 239, 732
TscAI CASTG 3 cut(s) 67, 139, 651
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 10, 238
TspRI CASTG 3 cut(s) 67, 139, 651
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 483
XapI RAATTY 1 cut(s) 343
XspI CTAG 1 cut(s) 710
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.