RchiOBHm_Chr7g0217181

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
35064240 .. 35066925
2686 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19435

Sequence Viewer

Length: 1245 bp
ATGGCGCTTTTGCAGCTTTTCATCACAGCCTCAATTCCGGTCTTGAAAGTGCTCTTGATCACTGCACTAGGTTCCTATCTTGCACTTGAGCGCGTTAATATTCTGGGGGAAGAAACCAGGAAGAACATGAACACTGTTGTTTTTTATGTATTCAGTCCAGCTCTGATTGGAACTAACCTTGCCCAGACTATTACATATGACAGTATGATTAAACTGTGGTTTATGCCTGTGAACATCTTAATCACGTTTATTGTTGGTTCTGTACTTGGATGGATACTCATCCAATTAGCAAGACCACCTCCACATCTCCGAGGCCTCATTTTGGGTTGCTGTGCCGCTGGAAATTTGGGGAACTTGCTCCTCATTATAATCCCAGCAGTCTGTAAAGAGAAGGGAAGCCCATTTGGAGCACCTGATGTCTGTCACACTTATGGAATGGCTTATGCATCACTTTCACTGGCGATAGGAGCCATTTACCTTTGGTCCTATGTGTATAACGTTGTGCGGATATCTTCAAAGAGGAGTACCCAAGACTCCCCCCAGTCTTTGGAGGAACCCTCCGAATCAAATCAAGTAAGTTGCACTGAGCCTCTGCTTTCTTCCAAGGAATATGGGATAGTGGAGGACAATACCGATCAGTATGCACTGCCCTGCACTATATCTCAACAAGACTCTAAGATAGAACCTCCGAGTAAATCCAAGAACTGTATAGTGAGGATGTGCCAAATGCTTAATCTTAAAACAATATTTGCCCCATCAACTACTGGAGCGATTGTTGGGTTTACAATTGGAGTCATCCCTCAGATTCGAAAACTAATGATAGGAGATGATGCTCCTCTGCGGGTGATCCAAGACACTACTTACTTGTTGGGAGATGGAGCTATTCCCGCTCTCACTTTGATAATTGGAGGAAACCTCCTTAAAGGTTTGAGAGGGTCAGGAATACAGAAATCTATTGTTGTTGGGATCATATTCGTTCGTTACATGTTCCTGCCTCTTACAGGCATATTGATCATTAAAGGGGCGCTAAAATTCGGCCTAGTGCACTCTGATCCTTTATATCTATTTGTTCTCCTGATTCAGTATACACTCCCACCTGCAATGAACATAGGAACCATCACCCAATTGTTCGGAGCGGGAGAGAACGAATGTTCAGTAATCATGCTGTGGACTTATGTATTTGCTTCAGTATCACTTACTTTATGGTCTGCCTTCTTTATGTGGTTTGTGGCCAGGCAAGTGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

414

Amino Acids

45.23

Weight (kDa)

8.49

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 402 4.9e-80 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 368
AarI CACCTGC 1 cut(s) 1105
Acc36I ACCTGC 1 cut(s) 1105
AccB7I CCANNNNNTGG 1 cut(s) 547
AccBSI CCGCTC 2 cut(s) 890, 1136
AccI GTMKAC 1 cut(s) 1085
AccII CGCG 1 cut(s) 93
AciI CCGC 5 cut(s) 336, 505, 841, 888, 1136
AclI AACGTT 1 cut(s) 498
AclWI GGATC 3 cut(s) 841, 974, 1046
AcoI YGGCCR 1 cut(s) 1230
AcsI RAATTY 2 cut(s) 343, 1031
AcuI CTGAAG 1 cut(s) 1170
AfaI GTAC 2 cut(s) 264, 526
AfiI CCNNNNNNNGG 3 cut(s) 322, 547, 1001
AflIII ACRYGT 1 cut(s) 984
AgsI TTSAA 2 cut(s) 46, 516
AjnI CCWGG 2 cut(s) 116, 1232
AluBI AGCT 3 cut(s) 16, 161, 881
AluI AGCT 3 cut(s) 16, 161, 881
Alw21I GWGCWC 3 cut(s) 54, 412, 1047
Alw44I GTGCAC 1 cut(s) 1043
AlwI GGATC 3 cut(s) 841, 974, 1046
AoxI GGCC 3 cut(s) 313, 1036, 1230
ApaLI GTGCAC 1 cut(s) 1043
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 2 cut(s) 343, 1031
AspLEI GCGC 3 cut(s) 7, 93, 1027
AspS9I GGNCC 1 cut(s) 483
AsuHPI GGTGA 2 cut(s) 856, 1111
AsuII TTCGAA 1 cut(s) 808
AvaII GGWCC 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 1047
BalI TGGCCA 1 cut(s) 1232
Bbv12I GWGCWC 3 cut(s) 54, 412, 1047
BbvI GCAGC 1 cut(s) 25
BccI CCATC 4 cut(s) 264, 763, 869, 1124
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 2 cut(s) 118, 1234
BciVI GTATCC 1 cut(s) 267
BclI TGATCA 2 cut(s) 57, 1011
BfaI CTAG 2 cut(s) 68, 1040
BfoI RGCGCY 2 cut(s) 8, 1028
BfuAI ACCTGC 1 cut(s) 1105
BfuI GTATCC 1 cut(s) 267
BisI GCNGC 2 cut(s) 14, 336
BlsI GCNGC 2 cut(s) 15, 337
Bme1390I CCNGG 2 cut(s) 118, 1234
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 4 cut(s) 73, 469, 555, 1114
BmrFI CCNGG 2 cut(s) 118, 1234
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 2 cut(s) 455, 820
BmuI ACTGGG 1 cut(s) 535
BplI GAGNNNNNCTC 4 cut(s) 542, 574, 900, 932
BpmI CTGGAG 1 cut(s) 786
Bpu14I TTCGAA 1 cut(s) 808
BpuEI CTTGAG 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 310, 603
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 547, 1001
Bse1I ACTGG 3 cut(s) 462, 541, 769
Bse3DI GCAATG 1 cut(s) 1107
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 2 cut(s) 118, 1234
BseDI CCNNGG 2 cut(s) 310, 603
BseGI GGATG 4 cut(s) 275, 279, 723, 795
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 3 cut(s) 322, 547, 1001
BseMI GCAATG 1 cut(s) 1107
BseMII CTCAG 2 cut(s) 576, 815
BseNI ACTGG 3 cut(s) 462, 541, 769
BseRI GAGGAG 3 cut(s) 350, 535, 825
BseSI GKGCMC 1 cut(s) 1047
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 2 cut(s) 48, 637
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 3 cut(s) 315, 1038, 1232
BsiHKAI GWGCWC 3 cut(s) 54, 412, 1047
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 322, 547, 1001
BsnI GGCC 3 cut(s) 315, 1038, 1232
Bsp119I TTCGAA 1 cut(s) 808
Bsp1286I GDGCHC 3 cut(s) 54, 412, 1047
Bsp143I GATC 6 cut(s) 57, 634, 846, 966, 1011, 1051
BspACI CCGC 5 cut(s) 336, 505, 841, 888, 1136
BspANI GGCC 3 cut(s) 315, 1038, 1232
BspCNI CTCAG 2 cut(s) 577, 814
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 4 cut(s) 73, 469, 555, 1114
BspMI ACCTGC 1 cut(s) 1105
BspPI GGATC 3 cut(s) 841, 974, 1046
BspT104I TTCGAA 1 cut(s) 808
BsrBI CCGCTC 2 cut(s) 890, 1136
BsrDI GCAATG 1 cut(s) 1107
BsrI ACTGG 3 cut(s) 462, 541, 769
BssECI CCNNGG 2 cut(s) 310, 603
BssMI GATC 6 cut(s) 57, 634, 846, 966, 1011, 1051
BssNAI GTATAC 1 cut(s) 1086
BssT1I CCWWGG 1 cut(s) 603
Bst1107I GTATAC 1 cut(s) 1086
Bst2UI CCWGG 2 cut(s) 118, 1234
Bst4CI ACNGT 4 cut(s) 136, 203, 216, 707
BstBI TTCGAA 1 cut(s) 808
BstDEI CTNAG 3 cut(s) 585, 675, 801
BstENI CCTNNNNNAGG 1 cut(s) 999
BstF5I GGATG 4 cut(s) 275, 279, 723, 795
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 2 cut(s) 8, 1028
BstHHI GCGC 3 cut(s) 7, 93, 1027
BstKTI GATC 6 cut(s) 60, 637, 849, 969, 1014, 1054
BstMBI GATC 6 cut(s) 57, 634, 846, 966, 1011, 1051
BstMWI GCNNNNNNNGC 3 cut(s) 13, 467, 887
BstNI CCWGG 2 cut(s) 118, 1234
BstNSI RCATGY 1 cut(s) 988
BstSCI CCNGG 2 cut(s) 116, 1232
BstSLI GKGCMC 1 cut(s) 1047
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 25
BstZ17I GTATAC 1 cut(s) 1086
BsuI GTATCC 1 cut(s) 267
BsuRI GGCC 3 cut(s) 315, 1038, 1232
BtsCI GGATG 4 cut(s) 275, 279, 723, 795
BtsI GCAGTG 2 cut(s) 60, 644
BtsIMutI CAGTG 5 cut(s) 60, 132, 455, 582, 644
BveI ACCTGC 1 cut(s) 1105
CfoI GCGC 3 cut(s) 7, 93, 1027
Cfr13I GGNCC 1 cut(s) 483
Csp6I GTAC 2 cut(s) 263, 525
CviAII CATG 3 cut(s) 127, 985, 1162
CviQI GTAC 2 cut(s) 263, 525
DdeI CTNAG 3 cut(s) 585, 675, 801
DpnI GATC 6 cut(s) 59, 636, 848, 968, 1013, 1053
DpnII GATC 6 cut(s) 57, 634, 846, 966, 1011, 1051
EaeI YGGCCR 1 cut(s) 1230
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 315
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 1170
EcoNI CCTNNNNNAGG 1 cut(s) 999
EcoRII CCWGG 2 cut(s) 116, 1232
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 3 cut(s) 130, 988, 1165
FatI CATG 3 cut(s) 126, 984, 1161
FauI CCCGC 3 cut(s) 834, 895, 1129
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 2 cut(s) 57, 1011
FblI GTMKAC 1 cut(s) 1085
Fnu4HI GCNGC 2 cut(s) 14, 336
FokI GGATG 4 cut(s) 266, 282, 730, 782
Fsp4HI GCNGC 2 cut(s) 14, 336
FspBI CTAG 2 cut(s) 68, 1040
GlaI GCGC 3 cut(s) 6, 92, 1026
GluI GCNGC 2 cut(s) 14, 336
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 1 cut(s) 786
HaeII RGCGCY 2 cut(s) 8, 1028
HaeIII GGCC 3 cut(s) 315, 1038, 1232
HapII CCGG 1 cut(s) 38
HhaI GCGC 3 cut(s) 7, 93, 1027
Hin1II CATG 3 cut(s) 130, 988, 1165
Hin6I GCGC 3 cut(s) 5, 91, 1025
HinP1I GCGC 3 cut(s) 5, 91, 1025
HinfI GANTC 6 cut(s) 533, 563, 671, 792, 805, 1078
HpaII CCGG 1 cut(s) 38
HphI GGTGA 2 cut(s) 856, 1111
Hpy166II GTNNAC 5 cut(s) 232, 783, 1045, 1086, 1170
Hpy188I TCNGA 7 cut(s) 165, 311, 562, 690, 804, 1051, 1133
Hpy188III TCNNGA 4 cut(s) 43, 55, 939, 1075
Hpy8I GTNNAC 5 cut(s) 232, 783, 1045, 1086, 1170
HpyAV CCTTC 2 cut(s) 385, 1222
HpyCH4III ACNGT 4 cut(s) 136, 203, 216, 707
HpyCH4IV ACGT 2 cut(s) 245, 498
HpyCH4V TGCA 9 cut(s) 13, 65, 83, 446, 582, 644, 654, 1045, 1100
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 467, 887
HpyF3I CTNAG 3 cut(s) 585, 675, 801
HpySE526I ACGT 2 cut(s) 245, 498
Hsp92II CATG 3 cut(s) 130, 988, 1165
HspAI GCGC 3 cut(s) 5, 91, 1025
Ksp22I TGATCA 2 cut(s) 57, 1011
Kzo9I GATC 6 cut(s) 57, 634, 846, 966, 1011, 1051
LmnI GCTCC 7 cut(s) 363, 407, 467, 767, 838, 878, 1133
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 2 cut(s) 455, 820
MaeI CTAG 2 cut(s) 68, 1040
MaeII ACGT 2 cut(s) 245, 498
MaeIII GTNAC 2 cut(s) 422, 980
MalI GATC 6 cut(s) 59, 636, 848, 968, 1013, 1053
MbiI CCGCTC 2 cut(s) 890, 1136
MboI GATC 6 cut(s) 57, 634, 846, 966, 1011, 1051
MboII GAAGA 4 cut(s) 122, 133, 504, 591
MfeI CAATTG 2 cut(s) 786, 1124
MhlI GDGCHC 3 cut(s) 54, 412, 1047
MlsI TGGCCA 1 cut(s) 1232
MluCI AATT 7 cut(s) 33, 284, 343, 786, 903, 1031, 1124
MluNI TGGCCA 1 cut(s) 1232
MlyI GAGTC 3 cut(s) 527, 665, 801
Mox20I TGGCCA 1 cut(s) 1232
Mph1103I ATGCAT 1 cut(s) 448
MscI TGGCCA 1 cut(s) 1232
MseI TTAA 7 cut(s) 96, 210, 239, 732, 738, 921, 1017
MslI CAYNNNNRTG 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 1232
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 118, 1234
MunI CAATTG 2 cut(s) 786, 1124
MvaI CCWGG 2 cut(s) 118, 1234
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 13, 467, 887
NdeI CATATG 1 cut(s) 196
NdeII GATC 6 cut(s) 57, 634, 846, 966, 1011, 1051
NlaIII CATG 3 cut(s) 130, 988, 1165
NlaIV GGNNCC 4 cut(s) 73, 469, 555, 1114
NmuCI GTSAC 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 1 cut(s) 988
NspV TTCGAA 1 cut(s) 808
PaqCI CACCTGC 1 cut(s) 1105
PceI AGGCCT 1 cut(s) 315
PciI ACATGT 1 cut(s) 984
PfeI GAWTC 3 cut(s) 563, 805, 1078
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 2 cut(s) 15, 337
PleI GAGTC 3 cut(s) 527, 665, 800
PpsI GAGTC 3 cut(s) 527, 665, 800
PscI ACATGT 1 cut(s) 984
PsiI TTATAA 1 cut(s) 368
Psp1406I AACGTT 1 cut(s) 498
Psp6I CCWGG 2 cut(s) 116, 1232
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 2 cut(s) 116, 1232
PspN4I GGNNCC 4 cut(s) 73, 469, 555, 1114
PspPI GGNCC 1 cut(s) 483
RsaI GTAC 2 cut(s) 264, 526
RsaNI GTAC 2 cut(s) 263, 525
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 7 cut(s) 96, 210, 239, 732, 738, 921, 1017
SatI GCNGC 2 cut(s) 14, 336
Sau3AI GATC 6 cut(s) 57, 634, 846, 966, 1011, 1051
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 3 cut(s) 527, 665, 801
ScrFI CCNGG 2 cut(s) 118, 1234
SduI GDGCHC 3 cut(s) 54, 412, 1047
SfaNI GCATC 2 cut(s) 455, 820
SfuI TTCGAA 1 cut(s) 808
SinI GGWCC 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 7 cut(s) 33, 284, 343, 786, 903, 1031, 1124
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 5 cut(s) 336, 505, 841, 888, 1136
SspI AATATT 2 cut(s) 100, 747
SspMI CTAG 2 cut(s) 68, 1040
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 116, 1232
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 4 cut(s) 136, 203, 216, 707
TaiI ACGT 2 cut(s) 248, 501
TaqI TCGA 1 cut(s) 808
TasI AATT 7 cut(s) 33, 284, 343, 786, 903, 1031, 1124
TatI WGTACW 1 cut(s) 262
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 3 cut(s) 563, 805, 1078
Tru1I TTAA 7 cut(s) 96, 210, 239, 732, 738, 921, 1017
Tru9I TTAA 7 cut(s) 96, 210, 239, 732, 738, 921, 1017
TscAI CASTG 5 cut(s) 67, 139, 462, 589, 651
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 3 cut(s) 10, 143, 1118
TspRI CASTG 5 cut(s) 67, 139, 462, 589, 651
Van91I CCANNNNNTGG 1 cut(s) 547
VneI GTGCAC 1 cut(s) 1043
VpaK11BI GGWCC 1 cut(s) 483
XagI CCTNNNNNAGG 1 cut(s) 999
XapI RAATTY 2 cut(s) 343, 1031
XceI RCATGY 1 cut(s) 988
XmiI GTMKAC 1 cut(s) 1085
XspI CTAG 2 cut(s) 68, 1040
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.