Rh7CG344700

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000423
Physical Location & Seq
Forward (+)
38867164 .. 38871233
4070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG344700.1

Sequence Viewer

Length: 744 bp
ATGCTCCTTATTATAATCCCAGCTGTTTGTGAAGAAAAAGGGAGTCCATTTGGAGCTCCTGATGTTTGTTATGCTTACGGATTGGCATATGCTTCACTTTCAATGGCGGTACTTCTTTATTTTTCTTTATTTATTTTACCTTTTTTTTTTTTTTGGTTTATCATATTTTTAATTTCAATCGCTTTTGTTCGCCAGATCTCGGTTGTTTATTTGTGGTCCTATGTTTATAGTATTGTGAGGATATCTTCAAAGAGAGACACTCTTGATCAAGACACGATCCAATCTTTGGAGAGATCCTCCATCCCAAACCAAATCATGACACCTCCGGGCAAAATAATGAACCGTATAATGAAGGTGGTTAAAAAGCTCAATCTAGAAACGATCTTTTCCCCCTCAATAGTTGCAGCGATCGTTGGCTTTGTTATCGGAGTCATCCCTCCAGTTCGAAAAGTATTCATAGAAGATGGCGCTCCTCTACGGGTGATTAATGACACTGCTTCCTTGTTGGGAGGTGGAGATATCCCGGCTGTCACTCTTATAATAGGAGGAAACCTCCTTAAAGGCCTGAGAGGGTCTGGGATACAGACTTCTCTCGTTATCGGCATCATCATTGTTCGTTATGTTGCCCTGCCTCTTGCAGGCATATTGATCGTTAAAGGGGCAATGAAATTTGGCTTAGTACACTCTGATCCATTGTATCTGTTTGTGTTCTTCTCCTTCAATTTGCACTCCCACCTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

247

Amino Acids

27.17

Weight (kDa)

9.37

Isoelectric Point (pI)

31.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 60 - 221 4.5e-22 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 14, 539
AccB7I CCANNNNNTGG 1 cut(s) 286
AciI CCGC 1 cut(s) 107
AclWI GGATC 3 cut(s) 271, 288, 683
AcsI RAATTY 1 cut(s) 668
AfaI GTAC 2 cut(s) 111, 681
AfiI CCNNNNNNNGG 3 cut(s) 199, 286, 638
AgsI TTSAA 4 cut(s) 102, 177, 249, 721
AluBI AGCT 3 cut(s) 23, 56, 367
AluI AGCT 3 cut(s) 23, 56, 367
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 3 cut(s) 271, 288, 683
AoxI GGCC 1 cut(s) 562
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 668
AseI ATTAAT 1 cut(s) 486
AspLEI GCGC 1 cut(s) 470
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 2 cut(s) 327, 524
AsuHPI GGTGA 1 cut(s) 493
AsuII TTCGAA 1 cut(s) 445
AvaII GGWCC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 416
BccI CCATC 2 cut(s) 308, 458
BcgI CGANNNNNNTGC 2 cut(s) 631, 665
BciVI GTATCC 1 cut(s) 573
BclI TGATCA 1 cut(s) 265
BcnI CCSGG 2 cut(s) 327, 524
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 737
BfoI RGCGCY 1 cut(s) 471
BfuI GTATCC 1 cut(s) 573
BglII AGATCT 1 cut(s) 195
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme1390I CCNGG 2 cut(s) 327, 524
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 216
BmrFI CCNGG 2 cut(s) 327, 524
BmsI GCATC 1 cut(s) 612
BplI GAGNNNNNCTC 6 cut(s) 244, 276, 281, 313, 537, 569
BpmI CTGGAG 1 cut(s) 423
Bpu14I TTCGAA 1 cut(s) 445
BpuMI CCSGG 2 cut(s) 327, 524
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 286, 638
Bse1I ACTGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 669
BseGI GGATG 2 cut(s) 300, 432
BseLI CCNNNNNNNGG 3 cut(s) 199, 286, 638
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 1 cut(s) 557
BseNI ACTGG 1 cut(s) 440
BseRI GAGGAG 1 cut(s) 462
BseXI GCAGC 1 cut(s) 416
BseYI CCCAGC 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 1 cut(s) 564
BsiEI CGRYCG 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 326, 524
BslI CCNNNNNNNGG 3 cut(s) 199, 286, 638
BsmAI GTCTC 1 cut(s) 249
BsnI GGCC 1 cut(s) 564
Bsp119I TTCGAA 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 8 cut(s) 195, 265, 276, 293, 381, 408, 648, 688
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 564
BspCNI CTCAG 1 cut(s) 558
BspHI TCATGA 1 cut(s) 315
BspMAI CTGCAG 1 cut(s) 741
BspPI GGATC 3 cut(s) 271, 288, 683
BspT104I TTCGAA 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 669
BsrI ACTGG 1 cut(s) 440
BssMI GATC 8 cut(s) 195, 265, 276, 293, 381, 408, 648, 688
Bst4CI ACNGT 1 cut(s) 344
BstBI TTCGAA 1 cut(s) 445
BstC8I GCNNGC 1 cut(s) 640
BstDEI CTNAG 2 cut(s) 566, 676
BstENI CCTNNNNNAGG 1 cut(s) 636
BstF5I GGATG 2 cut(s) 300, 432
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 8 cut(s) 198, 268, 279, 296, 384, 411, 651, 691
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 8 cut(s) 195, 265, 276, 293, 381, 408, 648, 688
BstMCI CGRYCG 1 cut(s) 411
BstSCI CCNGG 2 cut(s) 325, 522
BstSFI CTRYAG 1 cut(s) 737
BstV1I GCAGC 1 cut(s) 416
BstX2I RGATCY 2 cut(s) 195, 293
BstYI RGATCY 2 cut(s) 195, 293
BsuI GTATCC 1 cut(s) 573
BsuRI GGCC 1 cut(s) 564
BtsCI GGATG 2 cut(s) 300, 432
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 1 cut(s) 640
CciI TCATGA 1 cut(s) 315
CfoI GCGC 1 cut(s) 470
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 2 cut(s) 110, 680
CviAII CATG 1 cut(s) 316
CviJI RGCY 7 cut(s) 23, 56, 367, 417, 527, 564, 675
CviKI_1 RGCY 7 cut(s) 23, 56, 367, 417, 527, 564, 675
CviQI GTAC 2 cut(s) 110, 680
DdeI CTNAG 2 cut(s) 566, 676
DpnI GATC 8 cut(s) 197, 267, 278, 295, 383, 410, 650, 690
DpnII GATC 8 cut(s) 195, 265, 276, 293, 381, 408, 648, 688
Ecl136II GAGCTC 1 cut(s) 56
Eco147I AGGCCT 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 58
Eco32I GATATC 2 cut(s) 243, 520
Eco47I GGWCC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 56
EcoNI CCTNNNNNAGG 1 cut(s) 636
EcoRV GATATC 2 cut(s) 243, 520
EcoT38I GRGCYC 1 cut(s) 58
FaeI CATG 1 cut(s) 319
FatI CATG 1 cut(s) 315
FauNDI CATATG 1 cut(s) 88
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 2 cut(s) 287, 419
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 1 cut(s) 374
GlaI GCGC 1 cut(s) 469
GluI GCNGC 1 cut(s) 405
GsaI CCCAGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 423
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 1 cut(s) 564
HapII CCGG 2 cut(s) 326, 524
HhaI GCGC 1 cut(s) 470
Hin1II CATG 1 cut(s) 319
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HinfI GANTC 2 cut(s) 43, 429
HpaII CCGG 2 cut(s) 326, 524
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 2 cut(s) 428, 688
Hpy188III TCNNGA 5 cut(s) 59, 263, 269, 316, 374
Hpy8I GTNNAC 1 cut(s) 682
HpyAV CCTTC 2 cut(s) 346, 727
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4V TGCA 4 cut(s) 404, 638, 727, 739
HpyF3I CTNAG 2 cut(s) 566, 676
Hsp92II CATG 1 cut(s) 319
HspAI GCGC 1 cut(s) 468
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 8 cut(s) 195, 265, 276, 293, 381, 408, 648, 688
LmnI GCTCC 4 cut(s) 9, 53, 61, 475
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 1 cut(s) 612
MaeI CTAG 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 529
MalI GATC 8 cut(s) 197, 267, 278, 295, 383, 410, 650, 690
MboI GATC 8 cut(s) 195, 265, 276, 293, 381, 408, 648, 688
MboII GAAGA 4 cut(s) 44, 237, 473, 703
MflI RGATCY 2 cut(s) 195, 293
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 3 cut(s) 171, 668, 721
MlyI GAGTC 2 cut(s) 52, 438
MseI TTAA 5 cut(s) 170, 360, 486, 558, 654
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 2 cut(s) 326, 524
MspR9I CCNGG 2 cut(s) 327, 524
NciI CCSGG 2 cut(s) 327, 524
NdeI CATATG 1 cut(s) 88
NdeII GATC 8 cut(s) 195, 265, 276, 293, 381, 408, 648, 688
NlaIII CATG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 529
NspV TTCGAA 1 cut(s) 445
PagI TCATGA 1 cut(s) 315
PceI AGGCCT 1 cut(s) 564
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 1 cut(s) 406
Ple19I CGATCG 1 cut(s) 411
PleI GAGTC 2 cut(s) 51, 437
PpsI GAGTC 2 cut(s) 51, 437
PshBI ATTAAT 1 cut(s) 486
PsiI TTATAA 2 cut(s) 14, 539
Psp124BI GAGCTC 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 19
PspPI GGNCC 1 cut(s) 216
PstI CTGCAG 1 cut(s) 741
PsuI RGATCY 2 cut(s) 195, 293
PvuI CGATCG 1 cut(s) 411
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 2 cut(s) 111, 681
RsaNI GTAC 2 cut(s) 110, 680
SacI GAGCTC 1 cut(s) 58
SaqAI TTAA 5 cut(s) 170, 360, 486, 558, 654
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 8 cut(s) 195, 265, 276, 293, 381, 408, 648, 688
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 2 cut(s) 52, 438
ScrFI CCNGG 2 cut(s) 327, 524
SduI GDGCHC 1 cut(s) 58
SetI ASST 9 cut(s) 25, 58, 142, 325, 357, 369, 514, 555, 738
SfaNI GCATC 1 cut(s) 612
SfcI CTRYAG 1 cut(s) 737
SfuI TTCGAA 1 cut(s) 445
SinI GGWCC 1 cut(s) 216
Sse9I AATT 3 cut(s) 171, 668, 721
SseBI AGGCCT 1 cut(s) 564
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 374
SstI GAGCTC 1 cut(s) 58
StuI AGGCCT 1 cut(s) 564
StyD4I CCNGG 2 cut(s) 325, 522
TaaI ACNGT 1 cut(s) 344
TaqI TCGA 1 cut(s) 445
TasI AATT 3 cut(s) 171, 668, 721
TatI WGTACW 1 cut(s) 679
Tru1I TTAA 5 cut(s) 170, 360, 486, 558, 654
Tru9I TTAA 5 cut(s) 170, 360, 486, 558, 654
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 4 cut(s) 353, 365, 445, 680
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 1 cut(s) 499
Van91I CCANNNNNTGG 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 216
VspI ATTAAT 1 cut(s) 486
XagI CCTNNNNNAGG 1 cut(s) 636
XapI RAATTY 1 cut(s) 668
XbaI TCTAGA 1 cut(s) 373
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.