Rmu_sc0039353.1_g000001

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039353.1
OG0000423
Physical Location & Seq
Forward (+)
1 .. 514
514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039353.1_g000001.1.cds

Sequence Viewer

Length: 238 bp
ccagtctttggaggaaccctccgaatcaaaccaagtaagttgcaccgagcctctgctttcttccaaggaatatgggatagtggaggacaatgccgatcagtatgcactgccctgcactatagctcaacaagactctaagatagaacctccgagtaaatccaagaactgtctagggagactgtttcaaaagcttaatctgaaaacgatatttgccccttcaactcttggagcggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

78

Amino Acids

8.5

Weight (kDa)

4.73

Isoelectric Point (pI)

72.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 8
AccBSI CCGCTC 1 cut(s) 231
AciI CCGC 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 8
AgsI TTSAA 2 cut(s) 186, 220
AluBI AGCT 2 cut(s) 123, 191
AluI AGCT 2 cut(s) 123, 191
Alw26I GTCTC 1 cut(s) 170
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 16
BplI GAGNNNNNCTC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 8
BsgI GTGCAG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 170
Bsp143I GATC 1 cut(s) 95
BspACI CCGC 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 16
BsrBI CCGCTC 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 1 cut(s) 95
BssT1I CCWWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 168, 181
BstDEI CTNAG 1 cut(s) 136
BstKTI GATC 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
CviJI RGCY 3 cut(s) 50, 123, 191
CviKI_1 RGCY 3 cut(s) 50, 123, 191
DdeI CTNAG 1 cut(s) 136
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaiI YATR 4 cut(s) 73, 103, 120, 236
FspBI CTAG 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 2 cut(s) 24, 132
Hpy188I TCNGA 3 cut(s) 23, 151, 199
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 2 cut(s) 168, 181
HpyCH4V TGCA 3 cut(s) 43, 105, 115
HpyF3I CTNAG 1 cut(s) 136
Kzo9I GATC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 2 cut(s) 15, 125
MaeI CTAG 1 cut(s) 171
MalI GATC 1 cut(s) 97
MbiI CCGCTC 1 cut(s) 231
MboI GATC 1 cut(s) 95
MboII GAAGA 1 cut(s) 52
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 5 cut(s) 5, 29, 61, 77, 157
MseI TTAA 1 cut(s) 193
NdeII GATC 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 16
PfeI GAWTC 1 cut(s) 24
PflMI CCANNNNNTGG 1 cut(s) 8
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 193
Sau3AI GATC 1 cut(s) 95
SchI GAGTC 1 cut(s) 126
SetI ASST 3 cut(s) 125, 149, 193
SfcI CTRYAG 1 cut(s) 118
SgeI CNNG 9 cut(s) 14, 45, 59, 77, 124, 141, 163, 173, 183
SsiI CCGC 1 cut(s) 231
SspMI CTAG 1 cut(s) 171
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 168, 181
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 1 cut(s) 193
Tru9I TTAA 1 cut(s) 193
TscAI CASTG 1 cut(s) 112
TspRI CASTG 1 cut(s) 112
Van91I CCANNNNNTGG 1 cut(s) 8
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.