Rh7AG305300

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000423
Physical Location & Seq
Forward (+)
34077967 .. 34088174
10208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG305300.1

Sequence Viewer

Length: 930 bp
ATGGAACTTTGGACGCTCTTCGTCACCGCATCAGTTCCGGTCTTGGAATCGTTCTTGATTACTGCGCTTGGCTCATATCTTGCACTTGATCGCGTGAACCTTTTGGGCCCAGATTGCAGGAAGTACTTGAACACTATTGTATTCTATGTGAACACTCCAGCCCTGATTGCTGCCAACCTTGCAGAGACAATAACATATGACAGCCTGGTTAAACTGTGGTTCATGCCGGTGAATATTCTTCTTACATTCATTGTTGGTTCAATATTTGGATGGATACTCATGAAATTAACAAGAACTCCTCCACATTTGCGAGGTCTCGTCTTGGGTTGTTGCGCTGCAGGAAATTTGGGAAACCTTCTCCTCATTATTATTCCAGCAGTTTGTGAAGAATCAGGGAGTCCATTTGGAGATGCTGATACCTGTGATACTACTGGGACTACTTATGCTTCACTTTCAATGGCGATTGGAGCCATTTATTTGTGGACCTATGTGTATAATATTGTGCGGATATCTTCAAAGATGAGCATCCAAGATTCCCCGCAGACCACCGACAGCTCGTCAACATCCAGCCACATAAGTTACACCGAGCCTCTACTTTCTATAGAGGACAATGTGGATCAATGTGAACCTCCCCGTAATGTATCTGAAGGAGATGCTAAGATGACATGTCTAGGTAAAACAAAGGAATGGATGGTGATGGTGAATGAAAAGCTCAATTTGAAAACAGTATTTTCCCCCTCAACTATTGCAGTGATTATTGGGTTTGCAGTTGGAATCATCTCTCCAATTCGAAACTTATTGATTGGAGACGACGCTCCTCTAGTGGTGATCGACGACACTACTTCGTTGTTAGGAGATGCTGCTATCCCGCTTCTTACTTTGATAATAGGAGGCAACCTTGTTAAAGGTAATAAAACTCATATTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

309

Amino Acids

33.37

Weight (kDa)

4.77

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 304 6.3e-59 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 4 cut(s) 27, 505, 539, 869
AclWI GGATC 1 cut(s) 624
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 666
AfaI GTAC 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 5 cut(s) 130, 261, 456, 516, 721
AhdI GACNNNNNGTC 1 cut(s) 556
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 3 cut(s) 555, 712, 927
AluI AGCT 3 cut(s) 555, 712, 927
Alw26I GTCTC 3 cut(s) 179, 320, 801
AlwI GGATC 1 cut(s) 624
AoxI GGCC 1 cut(s) 106
ApaI GGGCCC 1 cut(s) 110
ApeKI GCWGC 3 cut(s) 170, 335, 860
ApoI RAATTY 1 cut(s) 343
AspLEI GCGC 2 cut(s) 67, 335
AspS9I GGNCC 3 cut(s) 106, 107, 483
AsuHPI GGTGA 5 cut(s) 16, 241, 706, 712, 838
AsuII TTCGAA 1 cut(s) 790
AvaII GGWCC 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 110
BanII GRGCYC 1 cut(s) 110
BbvI GCAGC 3 cut(s) 157, 322, 847
BccI CCATC 3 cut(s) 264, 685, 691
BciT130I CCWGG 1 cut(s) 206
BciVI GTATCC 1 cut(s) 267
BcoDI GTCTC 3 cut(s) 179, 320, 801
BfaI CTAG 3 cut(s) 671, 821, 928
BfmI CTRYAG 2 cut(s) 336, 600
BfuI GTATCC 1 cut(s) 267
BisI GCNGC 3 cut(s) 171, 336, 861
BlsI GCNGC 3 cut(s) 172, 337, 862
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 483
BmeRI GACNNNNNGTC 1 cut(s) 556
BmgT120I GGNCC 3 cut(s) 106, 107, 483
BmiI GGNNCC 2 cut(s) 108, 469
BmrFI CCNGG 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 5 cut(s) 38, 400, 534, 643, 847
BmuI ACTGGG 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 141
Bpu14I TTCGAA 1 cut(s) 790
BsaBI GATNNNNATC 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 436
Bse8I GATNNNNATC 1 cut(s) 524
BseBI CCWGG 1 cut(s) 206
BseGI GGATG 4 cut(s) 275, 525, 563, 696
BseJI GATNNNNATC 1 cut(s) 524
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 3 cut(s) 288, 350, 807
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 3 cut(s) 157, 322, 847
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 108
BsiSI CCGG 2 cut(s) 38, 227
BslFI GGGAC 1 cut(s) 448
BsmAI GTCTC 3 cut(s) 179, 320, 801
BsmBI CGTCTC 1 cut(s) 801
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 320
Bsp119I TTCGAA 1 cut(s) 790
Bsp120I GGGCCC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 3 cut(s) 88, 616, 828
BspACI CCGC 4 cut(s) 27, 505, 539, 869
BspANI GGCC 1 cut(s) 108
BspFNI CGCG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 2 cut(s) 108, 469
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 1 cut(s) 624
BspQI GCTCTTC 1 cut(s) 23
BspT104I TTCGAA 1 cut(s) 790
BspTNI GGTCTC 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 226
BssMI GATC 3 cut(s) 88, 616, 828
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 216, 727
Bst6I CTCTTC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 790
BstDEI CTNAG 1 cut(s) 657
BstF5I GGATG 4 cut(s) 275, 525, 563, 696
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 2 cut(s) 67, 335
BstKTI GATC 3 cut(s) 91, 619, 831
BstMAI GTCTC 3 cut(s) 179, 320, 801
BstMBI GATC 3 cut(s) 88, 616, 828
BstMWI GCNNNNNNNGC 4 cut(s) 114, 167, 179, 467
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 2 cut(s) 336, 600
BstSLI GKGCMC 1 cut(s) 110
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 3 cut(s) 157, 322, 847
BsuI GTATCC 1 cut(s) 267
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 4 cut(s) 275, 525, 563, 696
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 1 cut(s) 756
CciI TCATGA 1 cut(s) 279
CfoI GCGC 2 cut(s) 67, 335
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 106, 107, 483
CseI GACGC 2 cut(s) 22, 821
Csp6I GTAC 1 cut(s) 124
CviAII CATG 3 cut(s) 223, 280, 666
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 657
DpnI GATC 3 cut(s) 90, 618, 830
DpnII GATC 3 cut(s) 88, 616, 828
DriI GACNNNNNGTC 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 23
Eam1105I GACNNNNNGTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 320
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 666
EcoRII CCWGG 1 cut(s) 204
EcoRV GATATC 1 cut(s) 510
EcoT38I GRGCYC 1 cut(s) 110
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 3 cut(s) 226, 283, 669
FaqI GGGAC 1 cut(s) 448
FatI CATG 3 cut(s) 222, 279, 665
FauI CCCGC 2 cut(s) 546, 876
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 171, 336, 861
FokI GGATG 4 cut(s) 282, 512, 550, 703
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 3 cut(s) 171, 336, 861
FspBI CTAG 3 cut(s) 671, 821, 928
GlaI GCGC 2 cut(s) 66, 334
GluI GCNGC 3 cut(s) 171, 336, 861
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 108
HapII CCGG 2 cut(s) 38, 227
HgaI GACGC 2 cut(s) 22, 821
HhaI GCGC 2 cut(s) 67, 335
Hin1II CATG 3 cut(s) 226, 283, 669
Hin6I GCGC 2 cut(s) 65, 333
HinP1I GCGC 2 cut(s) 65, 333
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 5 cut(s) 47, 389, 397, 533, 774
HpaII CCGG 2 cut(s) 38, 227
HphI GGTGA 5 cut(s) 16, 241, 706, 712, 838
Hpy166II GTNNAC 5 cut(s) 97, 151, 483, 561, 626
Hpy188I TCNGA 1 cut(s) 646
Hpy188III TCNNGA 2 cut(s) 55, 280
Hpy8I GTNNAC 5 cut(s) 97, 151, 483, 561, 626
Hpy99I CGWCG 2 cut(s) 815, 836
HpyAV CCTTC 2 cut(s) 365, 641
HpyCH4III ACNGT 2 cut(s) 216, 727
HpyCH4V TGCA 6 cut(s) 83, 117, 182, 338, 749, 767
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 167, 179, 467
HpyF3I CTNAG 1 cut(s) 657
Hsp92II CATG 3 cut(s) 226, 283, 669
HspAI GCGC 2 cut(s) 65, 333
Kzo9I GATC 3 cut(s) 88, 616, 828
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 2 cut(s) 467, 820
Lsp1109I GCAGC 3 cut(s) 157, 322, 847
LweI GCATC 5 cut(s) 38, 400, 534, 643, 847
MaeI CTAG 3 cut(s) 671, 821, 928
MaeIII GTNAC 2 cut(s) 22, 578
MalI GATC 3 cut(s) 90, 618, 830
MboI GATC 3 cut(s) 88, 616, 828
MboII GAAGA 4 cut(s) 10, 230, 398, 504
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 4 cut(s) 284, 343, 715, 786
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 751
MnlI CCTC 9 cut(s) 305, 309, 371, 598, 600, 639, 748, 828, 884
MseI TTAA 3 cut(s) 210, 287, 903
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 2 cut(s) 38, 227
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 4 cut(s) 114, 167, 179, 467
NdeI CATATG 1 cut(s) 196
NdeII GATC 3 cut(s) 88, 616, 828
NlaIII CATG 3 cut(s) 226, 283, 669
NlaIV GGNNCC 2 cut(s) 108, 469
NmuCI GTSAC 1 cut(s) 22
NspI RCATGY 1 cut(s) 669
NspV TTCGAA 1 cut(s) 790
PagI TCATGA 1 cut(s) 279
PciI ACATGT 1 cut(s) 665
PciSI GCTCTTC 1 cut(s) 23
PfeI GAWTC 4 cut(s) 47, 389, 533, 774
PkrI GCNGC 3 cut(s) 172, 337, 862
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
PscI ACATGT 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 108, 469
PspOMI GGGCCC 1 cut(s) 106
PspPI GGNCC 3 cut(s) 106, 107, 483
PstI CTGCAG 1 cut(s) 340
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 210, 287, 903
SatI GCNGC 3 cut(s) 171, 336, 861
Sau3AI GATC 3 cut(s) 88, 616, 828
Sau96I GGNCC 3 cut(s) 106, 107, 483
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 110
SfaNI GCATC 5 cut(s) 38, 400, 534, 643, 847
SfcI CTRYAG 2 cut(s) 336, 600
SfuI TTCGAA 1 cut(s) 790
SinI GGWCC 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 4 cut(s) 284, 343, 715, 786
SsiI CCGC 4 cut(s) 27, 505, 539, 869
SspI AATATT 3 cut(s) 235, 264, 499
SspMI CTAG 3 cut(s) 671, 821, 928
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 216, 727
TaqI TCGA 2 cut(s) 790, 831
TasI AATT 4 cut(s) 284, 343, 715, 786
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 4 cut(s) 47, 389, 533, 774
Tru1I TTAA 3 cut(s) 210, 287, 903
Tru9I TTAA 3 cut(s) 210, 287, 903
TscAI CASTG 1 cut(s) 756
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 3 cut(s) 170, 335, 860
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 4 cut(s) 211, 238, 296, 720
TspRI CASTG 1 cut(s) 756
VpaK11BI GGWCC 1 cut(s) 483
XapI RAATTY 1 cut(s) 343
XceI RCATGY 1 cut(s) 669
XspI CTAG 3 cut(s) 671, 821, 928
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.