Rroxscaffold_3G00242520

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000423
Physical Location & Seq
Reverse (-)
34821601 .. 34824678
3078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00242520.1

Sequence Viewer

Length: 576 bp
ATGGCGCTTTTGCAGCTTTTCATCACAGCCTCAATTCCGGTCTTGAAAGTGCTCTTGATCACTGCACTTGGTTCCTATCTTGCACTTGAGCGCGTTAATATTCTGGGGGAAGAAACCAGGAAGAACATGAACACTGTTGTTTTTTATGTATTCAATCCAGCTCTGGTTGGAACTAACCTTGCCCAGACTATTACATATGACAGTATGATTAAACTGTGGTTTATGCCTGTGAACATCTTAATCACGTTTATTGTTGGTTCTGTACTTGGATGGATACTCATCCAATTAGCAAGACCACCTCCACATCTCCGAGGCCTCATTTTGGGTTGCTGTGCCGCTGGAAATTTGGGGAACTTGCTCCTCATTATAATCCCAGCGGTCTGTAAAGAGAAGGGAAGCCCATTTGGAGCTCCTGATGTCTGTCACACTTATGGAATGGCTTATGCATCACTTTCACTGGCGATAGGAGCCATTTACCTTTGGTCATATGTGTATAACATTGTGAGGATATCTTCAAAGAGGAGTACCCAAGACTCCCCCAGTCTTTGGAAGAACCCTCTGAATCGAACCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

191

Amino Acids

20.98

Weight (kDa)

9.51

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 178 8.8e-42 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 546
AccII CGCG 1 cut(s) 93
AciI CCGC 2 cut(s) 336, 377
AcsI RAATTY 1 cut(s) 343
AfaI GTAC 2 cut(s) 264, 526
AfiI CCNNNNNNNGG 2 cut(s) 322, 546
AgsI TTSAA 3 cut(s) 46, 154, 516
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 3 cut(s) 16, 161, 410
AluI AGCT 3 cut(s) 16, 161, 410
Alw21I GWGCWC 2 cut(s) 54, 412
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 343
AspLEI GCGC 2 cut(s) 7, 93
BanII GRGCYC 1 cut(s) 412
Bbv12I GWGCWC 2 cut(s) 54, 412
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 267
BclI TGATCA 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 267
BisI GCNGC 2 cut(s) 14, 336
BlsI GCNGC 2 cut(s) 15, 337
Bme1390I CCNGG 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 73, 469
BmrFI CCNGG 1 cut(s) 118
BmrI ACTGGG 1 cut(s) 534
BmsI GCATC 1 cut(s) 455
BmuI ACTGGG 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 546
Bse1I ACTGG 2 cut(s) 462, 540
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 2 cut(s) 275, 279
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 2 cut(s) 322, 546
BseNI ACTGG 2 cut(s) 462, 540
BseRI GAGGAG 2 cut(s) 350, 535
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 54, 412
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 322, 546
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 54, 412
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 2 cut(s) 336, 377
BspANI GGCC 1 cut(s) 315
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 73, 469
BsrI ACTGG 2 cut(s) 462, 540
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 3 cut(s) 136, 203, 216
BstF5I GGATG 2 cut(s) 275, 279
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 93
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 13, 467
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 25
BsuI GTATCC 1 cut(s) 267
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 2 cut(s) 275, 279
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 3 cut(s) 60, 132, 455
CfoI GCGC 2 cut(s) 7, 93
Csp6I GTAC 2 cut(s) 263, 525
CviAII CATG 1 cut(s) 127
CviJI RGCY 8 cut(s) 16, 29, 161, 315, 399, 410, 440, 470
CviKI_1 RGCY 8 cut(s) 16, 29, 161, 315, 399, 410, 440, 470
CviQI GTAC 2 cut(s) 263, 525
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 410
Eco147I AGGCCT 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 412
Eco32I GATATC 1 cut(s) 510
Eco53kI GAGCTC 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 116
EcoRV GATATC 1 cut(s) 510
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 412
FaeI CATG 1 cut(s) 130
FatI CATG 1 cut(s) 126
FauNDI CATATG 2 cut(s) 196, 487
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 14, 336
FokI GGATG 2 cut(s) 266, 282
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 2 cut(s) 14, 336
GlaI GCGC 2 cut(s) 6, 92
GluI GCNGC 2 cut(s) 14, 336
GsaI CCCAGC 1 cut(s) 377
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 38
HhaI GCGC 2 cut(s) 7, 93
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 2 cut(s) 5, 91
HinP1I GCGC 2 cut(s) 5, 91
HinfI GANTC 2 cut(s) 533, 562
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 311, 561
Hpy188III TCNNGA 3 cut(s) 43, 55, 413
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 3 cut(s) 136, 203, 216
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 4 cut(s) 13, 65, 83, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 467
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 2 cut(s) 5, 91
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 4 cut(s) 363, 407, 415, 467
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 455
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 422
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 4 cut(s) 122, 133, 504, 562
MhlI GDGCHC 2 cut(s) 54, 412
MluCI AATT 3 cut(s) 33, 284, 343
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 8 cut(s) 40, 305, 309, 326, 371, 498, 513, 567
Mph1103I ATGCAT 1 cut(s) 448
MseI TTAA 3 cut(s) 96, 210, 239
MslI CAYNNNNRTG 1 cut(s) 429
MspA1I CMGCKG 2 cut(s) 338, 377
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 13, 467
NdeI CATATG 2 cut(s) 196, 487
NdeII GATC 1 cut(s) 57
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 2 cut(s) 73, 469
NmuCI GTSAC 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 448
PceI AGGCCT 1 cut(s) 315
PfeI GAWTC 1 cut(s) 562
PflMI CCANNNNNTGG 1 cut(s) 546
PkrI GCNGC 2 cut(s) 15, 337
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
PsiI TTATAA 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 2 cut(s) 73, 469
RsaI GTAC 2 cut(s) 264, 526
RsaNI GTAC 2 cut(s) 263, 525
RseI CAYNNNNRTG 1 cut(s) 429
SacI GAGCTC 1 cut(s) 412
SaqAI TTAA 3 cut(s) 96, 210, 239
SatI GCNGC 2 cut(s) 14, 336
Sau3AI GATC 1 cut(s) 57
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 54, 412
SetI ASST 7 cut(s) 18, 163, 180, 248, 301, 412, 480
SfaNI GCATC 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 3 cut(s) 33, 284, 343
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 2 cut(s) 336, 377
SspI AATATT 1 cut(s) 100
SstI GAGCTC 1 cut(s) 412
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 116
TaaI ACNGT 3 cut(s) 136, 203, 216
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 565
TasI AATT 3 cut(s) 33, 284, 343
TatI WGTACW 1 cut(s) 262
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 1 cut(s) 562
Tru1I TTAA 3 cut(s) 96, 210, 239
Tru9I TTAA 3 cut(s) 96, 210, 239
TscAI CASTG 3 cut(s) 67, 139, 462
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 10, 143
TspRI CASTG 3 cut(s) 67, 139, 462
Van91I CCANNNNNTGG 1 cut(s) 546
XapI RAATTY 1 cut(s) 343
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.